Dbfetch

ID   BC080315; SV 1; linear; mRNA; STD; MUS; 4212 BP.
XX
AC   BC080315;
XX
DT   18-AUG-2004 (Rel. 80, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 7)
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DE   Mus musculus glutamate receptor, metabotropic 7, mRNA (cDNA clone MGC:90857
DE   IMAGE:6853901), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4212
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-4212
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (16-AUG-2004) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; 16a550cfa66f01a9e60f172a2804a035.
DR   Ensembl-Gn; ENSMUSG00000056755; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000172951; mus_musculus.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Jim Lin, University of Iowa
CC   cDNA Library Preparation: M. Bento Soares, University of Iowa
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 176 Row: j Column: 14
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: GenomeScan gene
CC   prediction.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4212
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="C57BL/6"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_BMAP_FY0"
FT                   /clone="MGC:90857 IMAGE:6853901"
FT                   /tissue_type="Brain, mouse, 13.5,14.5,16.5,17.5 dpc"
FT                   /note="Vector: pYX-ASC"
FT                   /db_xref="taxon:10090"
FT   gene            1..4212
FT                   /gene="Grm7"
FT                   /note="synonyms: Gprc1g, mGluR7, C030018L03"
FT   CDS             271..3018
FT                   /codon_start=1
FT                   /gene="Grm7"
FT                   /product="glutamate receptor, metabotropic 7"
FT                   /db_xref="GOA:Q68ED2"
FT                   /db_xref="InterPro:IPR000162"
FT                   /db_xref="InterPro:IPR000337"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="InterPro:IPR001883"
FT                   /db_xref="InterPro:IPR011500"
FT                   /db_xref="InterPro:IPR017978"
FT                   /db_xref="InterPro:IPR017979"
FT                   /db_xref="InterPro:IPR028082"
FT                   /db_xref="MGI:MGI:1351344"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q68ED2"
FT                   /protein_id="AAH80315.1"
FT                   /translation="MVQLGKLLRVLTLMKFPCCVLEVLLCVLAAAARGQEMYAPHSIRI
FT                   EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGAR
FT                   ILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSI
FT                   MVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVS
FT                   TLASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSR
FT                   AVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKR
FT                   ATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD
FT                   SNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFN
FT                   GSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTDELQLNIEDMQWGKGVRE
FT                   IPPSVCTLPCKPGQRKKTQKGTPCCWTCEPCDGYQYQFDEMTCQHCPYDQRPNENRTGC
FT                   QNIPIIKLEWHSPWAVIPVFLAMLGIIATIFVMATFIRYNDTPIVRASGRELSYVLLTG
FT                   IFLCYIITFLMIAKPDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAP
FT                   RLISPTSQLAITSSLISVQLLGVFIWFGVDPPNIIIDYDEHKTMNPEQARGVLKCDITD
FT                   LQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTA
FT                   QSAEKLYIQTTTLTISMNLSASVALGMLYMPKVYIIIFHPELNVQKRKRSFKAVVTAAT
FT                   MSSRLSHKPSDRPNGEAKTELCENVDPNSPAAKKKYVSYNNLVI"
FT   misc_difference 4046
FT                   /gene="Grm7"
FT                   /note="'C' in cDNA is 'G' in the mouse genome."
FT   misc_difference 4182..4212
FT                   /gene="Grm7"
FT                   /note="polyA tail: 31 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 4212 BP; 1142 A; 1005 C; 993 G; 1072 T; 0 other;
     agagcgcgag cggcaagcca gggagcgggg agcgcaagct ggtgcacggg ccagcggagc        60
     tacagtgcca ggtgccaaag actggctgac gccctgggac cccccacccc tctcctgctg       120
     cacctcctct gtctcctcca ccctctgtgc ctacagaagt ccccggggct tcccccgaaa       180
     ggagctcacc tcgagaagcc gggacctggg agagcccacc agcatcccct ccagcgccgc       240
     cgccgctacc gcagcagcat ccggagcggc atggtccagc tggggaagct gctccgcgtc       300
     ctgactttga tgaagttccc ctgctgcgtg ctggaggtgc tcctgtgcgt gctggcggcg       360
     gcggcgcgcg gccaggagat gtacgccccg cactcgatcc ggatcgaggg ggacgtcacc       420
     cttggggggc tgttcccagt gcacgccaag ggtcccagcg gagtgccctg cggcgacatc       480
     aagagggaga atgggatcca caggctggaa gctatgcttt atgctctcga ccagatcaac       540
     agcgatccca acctgctgcc caacgtaacg ttaggcgcgc ggatcctgga cacttgttcc       600
     agggacactt atgcgctcga acagtcgctc actttcgtcc aggcgcttat ccagaaggac       660
     acctccgacg tgcgttgcac caacggagag cccccggttt tcgtcaagcc agagaaagta       720
     gttggagtga ttggggcttc ggggagctcc gtctccatca tggtagccaa catcttgagg       780
     cttttccaga tacctcagat tagttatgca tccacggctc ctgaactcag tgatgaccgt       840
     cgctatgact tcttctctcg cgtggtccca cctgattcct tccaagccca agctatggta       900
     gacattgtaa aggcattggg ctggaattat gtatctactc ttgcatctga aggaagctat       960
     ggagagaaag gtgtggagtc cttcacacaa atttccaaag aagcaggtgg actctgcatt      1020
     gcccagtccg tgagaattcc ccaagaacgc aaagacagga ccattgactt tgatagaatt      1080
     atcaaacagc tcttggacac ccccaactcc agggctgtcg tgatttttgc caacgatgag      1140
     gatataaagc agatccttgc agcagccaaa agagctgacc aagtaggaca ttttctctgg      1200
     gttgggtcag acagctgggg ttccaaaatc aacccactgc atcagcatga agatattgca      1260
     gaaggagcca tcaccatcca acctaagaga gcgactgtgg aaggatttga tgcttacttc      1320
     acatcccgga cacttgaaaa caacaggaga aatgtatggt ttgccgaata ctgggaagaa      1380
     aacttcaact gcaagttgac aattagtgga tccaaaaaag aagacacgga tcgcaaatgc      1440
     acaggacagg agcgaattgg aaaagactct aattatgagc aggagggtaa agtacagttt      1500
     gtgatcgatg ctgtctatgc catggcacat gcccttcatc acatgaataa ggatctgtgt      1560
     gctgactacc ggggagtgtg cccagaaatg gagcaagcag ggggcaagaa gttgttgaag      1620
     tatatccgca atgttaactt caatggtagt gctggaaccc cagtgatgtt taacaaaaat      1680
     ggtgatgctc caggacgata tgacatcttc cagtaccaga caacaaacac taccaatcct      1740
     ggttatcgtc tcattgggca gtggacagat gaactgcagc tcaatataga ggacatgcag      1800
     tggggcaaag gagtccggga gatcccaccc tctgtgtgca cattgccatg caagcctggg      1860
     cagaggaaga agacacagaa gggaacccct tgctgctgga cttgtgagcc ctgtgatgga      1920
     taccagtatc aatttgatga gatgacatgt cagcattgtc cctatgacca gaggcccaat      1980
     gagaaccgaa ctggctgtca gaacatccca atcatcaaac tggagtggca ctccccctgg      2040
     gctgtaattc ctgtcttcct ggcaatgttg gggatcattg ccaccatctt tgtcatggca      2100
     accttcatcc gctacaatga tacacccatc gtcagggcat ctgggcggga actcagctat      2160
     gttttattga caggcatctt tctctgctat atcatcacct tcctaatgat tgccaagcca      2220
     gatgtggcag tgtgttcctt ccgacgtgtc ttcttggggt tgggtatgtg tattagttat      2280
     gcagcccttt taacaaaaac caatcggatt tatcgcatat tcgagcaggg caagaaatcg      2340
     gtgacagctc ccagactcat aagcccaaca tcacaactgg caattacctc cagtttaata      2400
     tcggtgcaac ttctaggtgt ctttatttgg tttggggttg acccacccaa catcatcata      2460
     gactacgatg agcataagac aatgaaccca gaacaagcca ggggagttct caaatgtgac      2520
     atcacagacc ttcagatcat ttgttctttg ggatatagca ttcttctcat ggtcacatgt      2580
     actgtgtatg ccatcaagac tcggggtgta ccagagaatt ttaatgaagc caagcccatt      2640
     ggattcacta tgtacacgac ttgtatcgta tggcttgcct tcatcccaat attttttggc      2700
     acagcgcaat cagcagaaaa gctctacata caaaccacca cgcttacaat ctccatgaac      2760
     ctaagtgcat cagtggcgct ggggatgcta tacatgccga aagtgtacat catcattttc      2820
     caccctgaac tcaatgtcca gaaacggaag cgaagcttca aggccgtagt cacagcagcc      2880
     accatgtcat cgaggctgtc acacaaaccc agtgacaggc ccaatggtga ggcaaagaca      2940
     gaactttgtg aaaatgtaga cccaaacagc cctgctgcaa aaaagaagta tgtcagttat      3000
     aataacctgg ttatctaacc tgttccatcc catggaacca cagaggagga agaccttgaa      3060
     ttattctgtc acccagcctg gcgtaggact cttttggtcc tgcctgcttc ctatctctgg      3120
     aggagcttcc ccacgcggga gagcaatggc agaggatcca cacatcctga acagctgctt      3180
     tatgagacac ctttacttta tcttggctta agaagtcatt ggcatcagca ctgccatctt      3240
     ggctgcaatt ctggactccc tacagcaaag ggagagttga gattcaagtc ccacccggct      3300
     cttttggatg aaccgctgag agcctcagga ctgtttttgg ggggctgact tgtctttcta      3360
     cgtacgtact tccaggctgc aaggttttga aattttctgt acagtttgtg aggacatttg      3420
     cactttgcca ctcaatgtcg tacctcggtt cactgtttgt ttttgaatgc cctgttttca      3480
     tagaatccta tcctctcaga tggtggaatc tttggggaaa ctttaaagta actaattttt      3540
     atttaaaaaa aaaatctcgg cagacataag agaacacaac cccccatgca catctgtaaa      3600
     tgactgtatg gttatgatta tagtaccacg aaaaatcatg ttattttttt ttaagacaca      3660
     cacaaaaaga tacttaaaga ccaaaaactg tgctgggaag atatgcccca cctatctttg      3720
     gtacatggta ggtgttgtga tggaaatgga aagcattggt taaatggaat agaggtcttg      3780
     atctttggaa tgcatgccgg taatgtattt tacagtacat gttaataatt tatgtttaat      3840
     atttgtattt gtgttctctt ttgttatttt acttagggta tatggatatt ttgcaataat      3900
     tttaatgatt cttaagctat ttgaaggaaa gaatatggat ttctcatgtc ttgaggtttt      3960
     gttcatgccc ctatgactga ccaatgtgat aaggacttta aaaaagaagc atgtatgttt      4020
     tttactgttt gtaagaagta ctttccttaa tcttgctgct tatgtgtcaa tttagtggaa      4080
     aagaaatccc ttgctgaaaa aaaaaatccc tttccattct cttccagttc tgtggtattg      4140
     tccaagaatg tatcaataaa atactttggt taactttttt aaaaaaaaaa aaaaaaaaaa      4200
     aaaaaaaaaa aa                                                          4212
//