Dbfetch
ID BC066206; SV 1; linear; mRNA; STD; MUS; 2021 BP. XX AC BC066206; XX DT 19-FEB-2004 (Rel. 78, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus alpha fetoprotein, mRNA (cDNA clone MGC:76732 IMAGE:30469872), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2021 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2021 RG NIH MGC Project RA ; RT ; RL Submitted (03-FEB-2004) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 0074ded69a94d2858f3dcfec1a363747. DR Ensembl-Gn; ENSMUSG00000054932; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029722; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029688; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029634; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029698; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0029421; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0030152; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028831; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0029391; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029535; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0029494; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029623; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0029523; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0030186; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0028550; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028910; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000042755; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0072546; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0072625; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0072539; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0072552; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0072195; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0073019; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0072739; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0072152; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0072283; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0072186; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0072339; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0072188; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0073233; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0072207; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0071342; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Minoru Ko CC cDNA Library Preparation: Yulan Piao and Minoru Ko (National CC Institute on Aging, NIH: http://lgsun.grc.nia.nih.gov/cDNA/) CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 144 Row: o Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31982512. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2021 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="NIA Mouse Newborn Kidney cDNA Library (Long 1)" FT /clone="MGC:76732 IMAGE:30469872" FT /tissue_type="Kidney, newborn mouse, C57BL/6J" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2021 FT /gene="Afp" FT CDS 31..1848 FT /codon_start=1 FT /gene="Afp" FT /product="alpha fetoprotein" FT /db_xref="GOA:P02772" FT /db_xref="InterPro:IPR000264" FT /db_xref="InterPro:IPR014760" FT /db_xref="InterPro:IPR020857" FT /db_xref="InterPro:IPR020858" FT /db_xref="InterPro:IPR021177" FT /db_xref="MGI:MGI:87951" FT /db_xref="UniProtKB/Swiss-Prot:P02772" FT /protein_id="AAH66206.1" FT /translation="MKWITPASLILLLHFAASKALHENEFGIASTLDSSQCVTEKNVLS FT IATITFTQFVPEATEEEVNKMTSDVLAAMKKNSGDGCLESQLSVFLDEICHETELSNKY FT GLSGCCSQSGVERHQCLLARKKTAPASVPPFQFPEPAESCKAHEENRAVFMNRFIYEVS FT RRNPFMYAPAILSLAAQYDKVVLACCKADNKEECFQTKRASIAKELREGSMLNEHVCSV FT IRKFGSRNLQATTIIKLSQKLTEANFTEIQKLALDVAHIHEECCQGNSLECLQDGEKVM FT TYICSQQNILSSKIAECCKLPMIQLGFCIIHAENGVKPEGLSLNPSQFLGDRNFAQFSS FT EEKIMFMASFLHEYSRTHPNLPVSVILRIAKTYQEILEKCSQSGNLPGCQDNLEEELQK FT HIEESQALSKQSCALYQTLGDYKLQNLFLIGYTRKAPQLTSAELIDLTGKMVSIASTCC FT QLSEEKWSGCGEGMADIFIGHLCIRNEASPVNSGISHCCNSSYSNRRLCITSFLRDETY FT APPPFSEDKFIFHKDLCQAQGKALQTMKQELLINLVKQKPELTEEQLAAVTADFSGLLE FT KCCKAQDQEVCFTEEGPKLISKTRDALGV" FT misc_difference 1997..2021 FT /gene="Afp" FT /note="polyA tail: 25 bases do not align to the mouse FT genome." XX SQ Sequence 2021 BP; 611 A; 459 C; 473 G; 478 T; 0 other; gcactgcctg cggtgaagga accagcagcc atgaagtgga tcacacccgc ttccctcatc 60 ctcctgctac atttcgctgc gtccaaagca ttgcacgaaa atgagtttgg gatagcttcc 120 acgttagatt cctcccagtg cgtgacggag aagaatgtgc ttagcatagc taccatcacc 180 tttacccagt ttgttccgga agccaccgag gaggaagtga acaaaatgac tagcgatgtg 240 ttggctgcaa tgaagaaaaa ctctggcgat gggtgtttag aaagccagct atctgtgttt 300 ctggatgaaa tttgtcatga gacggaactc tctaacaagt atggactctc aggctgctgc 360 agccaaagtg gagtggaaag acatcagtgt ctgctggcac gcaagaagac tgctccggcc 420 tctgtcccac ccttccagtt tccagaacct gccgagagtt gcaaagcaca tgaagaaaac 480 agggcagtgt tcatgaacag gttcatctat gaagtgtcaa ggaggaaccc cttcatgtat 540 gccccagcca ttctgtcctt ggctgctcag tacgacaagg tcgttctggc atgctgcaaa 600 gctgacaaca aggaggagtg cttccagaca aagagagcat ccattgcaaa ggaattaaga 660 gaaggaagca tgttaaatga gcatgtatgt tcagtgataa gaaaatttgg atcccgaaac 720 ctccaggcaa caaccattat taagctaagt caaaagttaa ctgaagcaaa ttttactgag 780 attcagaagc tggccctgga tgtggctcac atccacgagg agtgttgcca aggaaactcg 840 ctggagtgtc tgcaggatgg ggaaaaagtc atgacatata tatgttctca acaaaatatt 900 ctgtcaagca aaatagcaga gtgctgcaaa ttacccatga tccaactagg cttctgcata 960 attcacgcag agaatggcgt caaacctgaa ggcttatctc taaatccaag ccagtttttg 1020 ggagacagaa attttgccca attttcttca gaggaaaaaa tcatgttcat ggcaagcttt 1080 cttcatgaat actcaagaac tcaccccaac cttcctgtct cagtcattct aagaattgct 1140 aaaacgtacc aggaaatatt ggagaagtgt tcccagtctg gaaatctacc tggatgtcag 1200 gacaatctgg aagaagaatt gcagaaacac atcgaggaga gccaggcact gtccaagcaa 1260 agctgcgctc tctaccagac cttaggagac tacaaattac aaaatctgtt ccttattggt 1320 tacacgagga aagcccctca gctgacctca gcagagctga tcgacctcac cgggaagatg 1380 gtgagcattg cctccacgtg ctgccagctc agcgaggaga aatggtccgg ctgtggtgag 1440 ggaatggccg acattttcat tggacatttg tgtataagga atgaagcaag ccctgtgaac 1500 tctggtatca gccactgctg caactcttcg tattccaaca ggaggctatg catcaccagt 1560 tttctgaggg atgaaaccta tgcccctccc ccattctctg aggataaatt catcttccac 1620 aaggatctgt gccaagctca gggcaaagcc ctacagacca tgaaacaaga gcttctcatt 1680 aacctggtga agcaaaagcc tgaactgaca gaggagcagc tggcggctgt cactgcagat 1740 ttctcgggcc ttttggagaa gtgctgcaaa gcccaggacc aggaagtctg tttcacagaa 1800 gagggtccaa agttgatttc caaaactcgt gatgctttgg gcgtttaaac atctccagaa 1860 ggaagagtgg acaaaaaaat gtgttgactc tttggtgtga gccttttggc ttaactgtaa 1920 ctgctagtac tttaaccaca tggtgaagat gtccatgtga gatttctata ccttaggaat 1980 aaaaactttt caactaaaaa aaaaaaaaaa aaaaaaaaaa a 2021 //