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EBI DbfetchID BC060618; SV 1; linear; mRNA; STD; MUS; 4768 BP. XX AC BC060618; XX DT 04-NOV-2003 (Rel. 77, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 8) XX DE Mus musculus RAB6B, member RAS oncogene family, mRNA (cDNA clone MGC:77988 DE IMAGE:6406134), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus; Mus. XX RN [1] RP 1-4768 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4768 RG NIH MGC Project RA ; RT ; RL Submitted (31-OCT-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 0dabc889f421edbc974fc507d4f2ee25. DR Ensembl-Gn; ENSMUSG00000032549; mus_musculus. DR Ensembl-Tr; ENSMUST00000035155; mus_musculus. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: Plate: Row: Column: 0 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 40254255. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4768 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FO0" FT /clone="MGC:77988 IMAGE:6406134" FT /tissue_type="Brain, enriched mouse brain 12.5dp" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..4768 FT /gene="Rab6b" FT /note="synonym: 9630015C03" FT misc_difference 7 FT /gene="Rab6b" FT /note="'T' in cDNA is 'C' in the mouse genome." FT CDS 84..710 FT /codon_start=1 FT /gene="Rab6b" FT /product="RAB6B, member RAS oncogene family" FT /db_xref="GOA:P61294" FT /db_xref="InterPro:IPR001806" FT /db_xref="InterPro:IPR003579" FT /db_xref="InterPro:IPR005225" FT /db_xref="InterPro:IPR027417" FT /db_xref="MGI:MGI:107283" FT /protein_id="AAH60618.1" FT /translation="MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT FT IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT FT SKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNV FT KQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC" FT misc_difference 984 FT /gene="Rab6b" FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 4736..4768 FT /gene="Rab6b" FT /note="polyA tail: 33 bases do not align to the mouse FT genome." XX SQ Sequence 4768 BP; 1203 A; 1219 C; 1138 G; 1208 T; 0 other; cgcccttctc ctctcccctc cctgctcctt caccgcttcc tcctcctcct cctcctcctc 60 gcccggcccc agctgccagc accatgtccg cagggggaga ttttgggaac ccgctgcgaa 120 aattcaagtt ggttttccta ggggagcaga gcgtcgggaa gacgtctctg atcacgaggt 180 tcatgtatga cagcttcgac aacacctacc aggcaaccat cgggattgac ttcttgtcaa 240 aaaccatgta cttggaagac cgtacggttc gactgcagct ctgggacact gctgggcaag 300 agaggttccg cagcctgatc cccagctaca tccgagactc cacggtggct gtggtggtat 360 atgacattac taatctcaac tccttccagc agacttctaa atggattgat gacgtcagga 420 cggagagggg cagtgacgtg atcatcatgc ttgtgggtaa caagacggat ctggctgata 480 agaggcagat aaccatcgag gaaggagaac agcgggccaa agaactgagc gtcatgttca 540 tcgagaccag cgcgaagact ggctacaacg tgaagcagct cttccgacgt gtggcgtcag 600 ctctgcccgg catggagaat gtccaggaga agagcaaaga agggatgatt gacatcaagc 660 tggacaagcc tcaggagccc ccggccagcg agggcggctg ctcctgttaa tgcaccgccc 720 actcggcttc ctcagcgcca ctcacttgtt ttgcctccta tagcttccta acggggtggg 780 aactgagttt atcaagactg gaggatcttt cttttctctc tctctctctc tctaggagta 840 gggtgggaca tggggaggga ggctgggcat cagggaccac gtcactctta acagctgtta 900 cctaaacaac tattttttgg tttggttgta atatattgta ctttattaag attgccaaaa 960 actgttaaaa tttaaaaaaa aaaatttaaa tcatgtgtat acaacttttt gccagattag 1020 aaaagtagtc atttttattt gaaagaagtg cttttttgtt tgtttgtttt tgtatatttg 1080 taaacttaca gagaacctct ccacacactt cttccttcct gttctcttgg aactgtgtgt 1140 cacctctatt ttcctcctac ccccgccccc cccagcccag aaaattaaag caattaactg 1200 aacagtagta attacattct agttctgggt cacatggccc aaaccaacca aacccgcact 1260 ccacagtcaa atccaacttt aatctaacaa aacagcctct gagggggtat tgtcgagttc 1320 ttccctggca gagtgggaca cattggcagg cccctgagag gagatgaagg cccgtggact 1380 gtagattcag cagcagctcc ttggctgctt ccgcctcttc tccttccctg aaaaaaataa 1440 ccatagagcc agaaagcaca ggcaacagtg tgttctctgg gctgacccgg tgacagacag 1500 caagaagtta ctggaaggat ggggtgcgct tggcagctga gggctgaggc agtgtgtaat 1560 ctactggccc aaccattgac acacatggtt aggctgactc gccaactcaa tgtgtgatgc 1620 tgggtggctc agggacactg aagcctaggg cacctgccat cactgcaact accattgagg 1680 aagtgagagg agtcggccat gactccggac actccatgtt gtcagaccct tggatactaa 1740 tcttgccgaa cgttgttctg gaaaagctga ttccttgatg tgtcctcacc tctggcgtgg 1800 tacgtttgaa atctttgtat gaataccttt gggagtgttg gcagctgcac tgcacgcatc 1860 ttggagtcac tgtggggttt ccagaaggct gctgccccag ggtactgcaa cttgcccccc 1920 agcaggctgt ccttgctatt tccactcatt ccccagactg aagaccttca gagtctctta 1980 gcagagtgct cttctcaaag cagaatagct cttatattct aaacgctccc ggactcactg 2040 cccctgtctg cctttgggca ggcctggggc agtgactcta atcagagcag cctagcccca 2100 tagcattggc tcttctttca gactgctggt gggcagagtg aattgcctcc acaaggcaga 2160 actccaacaa ggaggttggg atgaattatg gaatctctca aagaatgagt tcaaaatggc 2220 agcctgtgtg gcagggctga ttctgtgagt gggcccgtca tgcgactcca tcctgggaga 2280 ctgtgtcaaa gccggttctg atgatgaaga gaggaagcag gaccgccctg ggtacctcct 2340 ccagaaggca aggaccaatg tacgagcata atcgaaacgt cacgtgttta gtttttatat 2400 gtgtgtacat aattatacat agagatagac ttgtgtatac acccttcgcg cgcacacata 2460 cacacactca catcctcaca tatacatgtg ctcagtgtat atcctcgtct ctcccgctca 2520 caacttggaa cttacattgt gattccggtt tttggaagtt caaaagtatg cagtgtattg 2580 aaataagaaa taactcaata ttgtcaaata acttgtggtt gtcttgcctt caataaaata 2640 gtgcatagat gtgttaaact acaagcaaaa gtagtccaca gaactacctt taccactgct 2700 ttttgtacct gtgtgcacag gtgtgcatgc cgtcgtgggc cagtgtcccc cactgtggac 2760 accccaccca tgtggtgctt gttggaagaa agcatactta gcccgtggtg acagcagcct 2820 ggttggcagt gaggggcttt gctggtggcc tctggcagag ccccactgac agcactctct 2880 actggctttc actgaatgaa tgtagggtga attttaacct tctggacact gaataacctt 2940 tcttgtattc ctgtaactcg aattagaaaa tccgttcact tctcttgtgc acacagtcta 3000 agacatcatg gcctgctact agaaacagca ggtaccatgg cagatgccat ttctggtcga 3060 tctggcctaa ggagccctgc cttcctagct tgtacacaaa accccctcct tgagtttaga 3120 ctctcccagc cctgcggccc ctgagaatta gggttctgcc ccattgctcc cccactccag 3180 aggtgccctg gccttatttc ctcagccaag ctacccatct ccttcccaaa aggcaatcaa 3240 ggcagccagg ccccaacaga actaactgta gtggacctgg gctttccccc tgaccgccac 3300 caccatccta cttgtacgta ggatccaatc aggttctcat aaagacatcc tgaaattatc 3360 tgtgccccca tctttgctaa attcagatca gtcagaggac aaaatggagg gttcctctta 3420 gggcatgatc ccaatgtcgt aattcagttc ctctctctgg acactgcctg gcctggcaga 3480 tgggcatggc cctcctcctt ttctttaaga gacttgaaag agagttgtca gcaaaactgt 3540 gagcagtgca gagattgtga aagggcaggt agtgtaagta gtattgttgt ggagtcagag 3600 gttagaatgc tgggtggtta gagccttgct gctgccagtc actgctcccc gttgccatct 3660 ttaaacattt cgcaatatct caagatccag gaaggcatgg ccatgtcagt tcaatgtctc 3720 aggcaacaaa gacaagggtt gcaaggtggt agctaggaat atagacgcct gggcctagtc 3780 tctgtaaccc agtggctaac cagtgtcaga gatctaagca gggctggctt cagcctcctg 3840 taggcagggc agtttatccc ttttccatat ggatggggga gaggctgtca gcaaagtggc 3900 tgaagagagc taagttagag ctacccaaga gccagccagc aggagtctgt gtcaaatgct 3960 cagggctcga tgctcactag tttctaaact acctctcccc caagaatggg aggcaccatc 4020 accttgccac agcactggga gccaaaccct tcctgtttca cgggtgggag aaccagaaca 4080 gaaaaggtca cctgcaagcc agagaggatc agaactagtg ttggcattct tgatccgttg 4140 ctgaccttgc ggtgtccaga caggactgct gtgctagcgt cccttaagcc atctctactc 4200 catggctagt acctaagggt cttcccagcc tggctagcta gagagaagat aggtgcattt 4260 tgggctctca ctgtaaagaa gagtggtccc caaatctact tgcattgtct tgtgtacaca 4320 cacacacaca cacacacaca caccccagta gtcagggtac ccttttaatt tttgtttgaa 4380 atcaacttct tcactgtttg gaaatcttgc agtttcaatg tgcacactcc ttggactcca 4440 gaccctgtct gattgatact ctctgcaggg tataattatc aggaaatcca cgcagcggga 4500 gttcagatgg gcccttcagg aggcaggaag cctccatagc aacgaaggcc agcctgccat 4560 tgtgatgtgt tgacttctca cctcacctgt cctttaaagt gaggagcaga gggcggcatt 4620 tctatctgta ctgggctcag aaggcacagt ggccatattg actttacatt caactgtgta 4680 atatgtggaa aagactcagc atgttggtca aacaataaac tgtcctaatt ctcgaaaaaa 4740 aaaaaaaaaa aaaaaaaaaa aaaaaaaa 4768 // |
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