Dbfetch
ID BC060618; SV 1; linear; mRNA; STD; MUS; 4768 BP.
XX
AC BC060618;
XX
DT 04-NOV-2003 (Rel. 77, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 8)
XX
DE Mus musculus RAB6B, member RAS oncogene family, mRNA (cDNA clone MGC:77988
DE IMAGE:6406134), complete cds.
XX
KW MGC.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-4768
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-4768
RG NIH MGC Project
RA ;
RT ;
RL Submitted (31-OCT-2003) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
XX
DR MD5; 0dabc889f421edbc974fc507d4f2ee25.
DR Ensembl-Gn; ENSMUSG00000032549; mus_musculus.
DR Ensembl-Tr; ENSMUST00000035155; mus_musculus.
XX
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Dr. Jim Lin, University of Iowa
CC cDNA Library Preparation: M. Bento Soares, University of Iowa
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr.
CC Thomas L. Casavant.
CC Web site: http://genome.uiowa.edu
CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu
CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A.,
CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K.,
CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J.,
CC Casavant,T., Soares,M.B.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: Plate: Row: Column: 0
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 40254255.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
XX
FH Key Location/Qualifiers
FH
FT source 1..4768
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="C57BL/6"
FT /mol_type="mRNA"
FT /clone_lib="NIH_BMAP_FO0"
FT /clone="MGC:77988 IMAGE:6406134"
FT /tissue_type="Brain, enriched mouse brain 12.5dp"
FT /note="Vector: pYX-ASC"
FT /db_xref="taxon:10090"
FT gene 1..4768
FT /gene="Rab6b"
FT /note="synonym: 9630015C03"
FT misc_difference 7
FT /gene="Rab6b"
FT /note="'T' in cDNA is 'C' in the mouse genome."
FT CDS 84..710
FT /codon_start=1
FT /gene="Rab6b"
FT /product="RAB6B, member RAS oncogene family"
FT /db_xref="GOA:P61294"
FT /db_xref="InterPro:IPR001806"
FT /db_xref="InterPro:IPR005225"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="MGI:MGI:107283"
FT /db_xref="UniProtKB/Swiss-Prot:P61294"
FT /protein_id="AAH60618.1"
FT /translation="MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT
FT IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT
FT SKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNV
FT KQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC"
FT misc_difference 984
FT /gene="Rab6b"
FT /note="1 base in cDNA is not found in the mouse genome."
FT misc_difference 4736..4768
FT /gene="Rab6b"
FT /note="polyA tail: 33 bases do not align to the mouse
FT genome."
XX
SQ Sequence 4768 BP; 1203 A; 1219 C; 1138 G; 1208 T; 0 other;
cgcccttctc ctctcccctc cctgctcctt caccgcttcc tcctcctcct cctcctcctc 60
gcccggcccc agctgccagc accatgtccg cagggggaga ttttgggaac ccgctgcgaa 120
aattcaagtt ggttttccta ggggagcaga gcgtcgggaa gacgtctctg atcacgaggt 180
tcatgtatga cagcttcgac aacacctacc aggcaaccat cgggattgac ttcttgtcaa 240
aaaccatgta cttggaagac cgtacggttc gactgcagct ctgggacact gctgggcaag 300
agaggttccg cagcctgatc cccagctaca tccgagactc cacggtggct gtggtggtat 360
atgacattac taatctcaac tccttccagc agacttctaa atggattgat gacgtcagga 420
cggagagggg cagtgacgtg atcatcatgc ttgtgggtaa caagacggat ctggctgata 480
agaggcagat aaccatcgag gaaggagaac agcgggccaa agaactgagc gtcatgttca 540
tcgagaccag cgcgaagact ggctacaacg tgaagcagct cttccgacgt gtggcgtcag 600
ctctgcccgg catggagaat gtccaggaga agagcaaaga agggatgatt gacatcaagc 660
tggacaagcc tcaggagccc ccggccagcg agggcggctg ctcctgttaa tgcaccgccc 720
actcggcttc ctcagcgcca ctcacttgtt ttgcctccta tagcttccta acggggtggg 780
aactgagttt atcaagactg gaggatcttt cttttctctc tctctctctc tctaggagta 840
gggtgggaca tggggaggga ggctgggcat cagggaccac gtcactctta acagctgtta 900
cctaaacaac tattttttgg tttggttgta atatattgta ctttattaag attgccaaaa 960
actgttaaaa tttaaaaaaa aaaatttaaa tcatgtgtat acaacttttt gccagattag 1020
aaaagtagtc atttttattt gaaagaagtg cttttttgtt tgtttgtttt tgtatatttg 1080
taaacttaca gagaacctct ccacacactt cttccttcct gttctcttgg aactgtgtgt 1140
cacctctatt ttcctcctac ccccgccccc cccagcccag aaaattaaag caattaactg 1200
aacagtagta attacattct agttctgggt cacatggccc aaaccaacca aacccgcact 1260
ccacagtcaa atccaacttt aatctaacaa aacagcctct gagggggtat tgtcgagttc 1320
ttccctggca gagtgggaca cattggcagg cccctgagag gagatgaagg cccgtggact 1380
gtagattcag cagcagctcc ttggctgctt ccgcctcttc tccttccctg aaaaaaataa 1440
ccatagagcc agaaagcaca ggcaacagtg tgttctctgg gctgacccgg tgacagacag 1500
caagaagtta ctggaaggat ggggtgcgct tggcagctga gggctgaggc agtgtgtaat 1560
ctactggccc aaccattgac acacatggtt aggctgactc gccaactcaa tgtgtgatgc 1620
tgggtggctc agggacactg aagcctaggg cacctgccat cactgcaact accattgagg 1680
aagtgagagg agtcggccat gactccggac actccatgtt gtcagaccct tggatactaa 1740
tcttgccgaa cgttgttctg gaaaagctga ttccttgatg tgtcctcacc tctggcgtgg 1800
tacgtttgaa atctttgtat gaataccttt gggagtgttg gcagctgcac tgcacgcatc 1860
ttggagtcac tgtggggttt ccagaaggct gctgccccag ggtactgcaa cttgcccccc 1920
agcaggctgt ccttgctatt tccactcatt ccccagactg aagaccttca gagtctctta 1980
gcagagtgct cttctcaaag cagaatagct cttatattct aaacgctccc ggactcactg 2040
cccctgtctg cctttgggca ggcctggggc agtgactcta atcagagcag cctagcccca 2100
tagcattggc tcttctttca gactgctggt gggcagagtg aattgcctcc acaaggcaga 2160
actccaacaa ggaggttggg atgaattatg gaatctctca aagaatgagt tcaaaatggc 2220
agcctgtgtg gcagggctga ttctgtgagt gggcccgtca tgcgactcca tcctgggaga 2280
ctgtgtcaaa gccggttctg atgatgaaga gaggaagcag gaccgccctg ggtacctcct 2340
ccagaaggca aggaccaatg tacgagcata atcgaaacgt cacgtgttta gtttttatat 2400
gtgtgtacat aattatacat agagatagac ttgtgtatac acccttcgcg cgcacacata 2460
cacacactca catcctcaca tatacatgtg ctcagtgtat atcctcgtct ctcccgctca 2520
caacttggaa cttacattgt gattccggtt tttggaagtt caaaagtatg cagtgtattg 2580
aaataagaaa taactcaata ttgtcaaata acttgtggtt gtcttgcctt caataaaata 2640
gtgcatagat gtgttaaact acaagcaaaa gtagtccaca gaactacctt taccactgct 2700
ttttgtacct gtgtgcacag gtgtgcatgc cgtcgtgggc cagtgtcccc cactgtggac 2760
accccaccca tgtggtgctt gttggaagaa agcatactta gcccgtggtg acagcagcct 2820
ggttggcagt gaggggcttt gctggtggcc tctggcagag ccccactgac agcactctct 2880
actggctttc actgaatgaa tgtagggtga attttaacct tctggacact gaataacctt 2940
tcttgtattc ctgtaactcg aattagaaaa tccgttcact tctcttgtgc acacagtcta 3000
agacatcatg gcctgctact agaaacagca ggtaccatgg cagatgccat ttctggtcga 3060
tctggcctaa ggagccctgc cttcctagct tgtacacaaa accccctcct tgagtttaga 3120
ctctcccagc cctgcggccc ctgagaatta gggttctgcc ccattgctcc cccactccag 3180
aggtgccctg gccttatttc ctcagccaag ctacccatct ccttcccaaa aggcaatcaa 3240
ggcagccagg ccccaacaga actaactgta gtggacctgg gctttccccc tgaccgccac 3300
caccatccta cttgtacgta ggatccaatc aggttctcat aaagacatcc tgaaattatc 3360
tgtgccccca tctttgctaa attcagatca gtcagaggac aaaatggagg gttcctctta 3420
gggcatgatc ccaatgtcgt aattcagttc ctctctctgg acactgcctg gcctggcaga 3480
tgggcatggc cctcctcctt ttctttaaga gacttgaaag agagttgtca gcaaaactgt 3540
gagcagtgca gagattgtga aagggcaggt agtgtaagta gtattgttgt ggagtcagag 3600
gttagaatgc tgggtggtta gagccttgct gctgccagtc actgctcccc gttgccatct 3660
ttaaacattt cgcaatatct caagatccag gaaggcatgg ccatgtcagt tcaatgtctc 3720
aggcaacaaa gacaagggtt gcaaggtggt agctaggaat atagacgcct gggcctagtc 3780
tctgtaaccc agtggctaac cagtgtcaga gatctaagca gggctggctt cagcctcctg 3840
taggcagggc agtttatccc ttttccatat ggatggggga gaggctgtca gcaaagtggc 3900
tgaagagagc taagttagag ctacccaaga gccagccagc aggagtctgt gtcaaatgct 3960
cagggctcga tgctcactag tttctaaact acctctcccc caagaatggg aggcaccatc 4020
accttgccac agcactggga gccaaaccct tcctgtttca cgggtgggag aaccagaaca 4080
gaaaaggtca cctgcaagcc agagaggatc agaactagtg ttggcattct tgatccgttg 4140
ctgaccttgc ggtgtccaga caggactgct gtgctagcgt cccttaagcc atctctactc 4200
catggctagt acctaagggt cttcccagcc tggctagcta gagagaagat aggtgcattt 4260
tgggctctca ctgtaaagaa gagtggtccc caaatctact tgcattgtct tgtgtacaca 4320
cacacacaca cacacacaca caccccagta gtcagggtac ccttttaatt tttgtttgaa 4380
atcaacttct tcactgtttg gaaatcttgc agtttcaatg tgcacactcc ttggactcca 4440
gaccctgtct gattgatact ctctgcaggg tataattatc aggaaatcca cgcagcggga 4500
gttcagatgg gcccttcagg aggcaggaag cctccatagc aacgaaggcc agcctgccat 4560
tgtgatgtgt tgacttctca cctcacctgt cctttaaagt gaggagcaga gggcggcatt 4620
tctatctgta ctgggctcag aaggcacagt ggccatattg actttacatt caactgtgta 4680
atatgtggaa aagactcagc atgttggtca aacaataaac tgtcctaatt ctcgaaaaaa 4740
aaaaaaaaaa aaaaaaaaaa aaaaaaaa 4768
//
