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EBI Dbfetch

ID   BC059004; SV 1; linear; mRNA; STD; MUS; 4064 BP.
XX
AC   BC059004;
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DT   23-OCT-2003 (Rel. 77, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 8)
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DE   Mus musculus solute carrier family 7 (cationic amino acid transporter, y+
DE   system), member 8, mRNA (cDNA clone MGC:69608 IMAGE:6849059), complete cds.
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KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
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RN   [1]
RP   1-4064
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-4064
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (01-OCT-2003) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; 0e1b635cab7c30a11ca46f854a826e34.
DR   Ensembl-Gn; ENSMUSG00000022180; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000022787; mus_musculus.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Jim Lin, University of Iowa
CC   cDNA Library Preparation: M. Bento Soares, University of Iowa
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
CC   Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
CC   Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
CC   Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
CC   Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
CC   Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
CC   Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 132 Row: p Column: 4
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 40254562.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4064
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="C57BL/6"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_BMAP_FY0"
FT                   /clone="MGC:69608 IMAGE:6849059"
FT                   /tissue_type="Brain, mouse, 13.5,14.5,16.5,17.5 dpc"
FT                   /note="Vector: pYX-ASC"
FT                   /db_xref="taxon:10090"
FT   gene            1..4064
FT                   /gene="Slc7a8"
FT                   /note="synonym: LAT2"
FT   CDS             560..2155
FT                   /codon_start=1
FT                   /gene="Slc7a8"
FT                   /product="solute carrier family 7 (cationic amino acid
FT                   transporter, y+ system), member 8"
FT                   /db_xref="GOA:Q9QXW9"
FT                   /db_xref="InterPro:IPR002293"
FT                   /db_xref="InterPro:IPR004760"
FT                   /db_xref="MGI:MGI:1355323"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9QXW9"
FT                   /protein_id="AAH59004.1"
FT                   /translation="MEKGARQRNNTAKNHPGSDTSPEAEASSGGGGVALKKEIGLVSAC
FT                   GIIVGNIIGSGIFVSPKGVLENAGSVGLALIVWIVTGIITAVGALCYAELGVTIPKSGG
FT                   DYSYVKDIFGGLAGFLRLWIAVLVIYPTNQAVIALTFSNYVLQPLFPTCFPPESGLRLL
FT                   AAICLLLLTWVNCSSVRWATRVQDIFTAGKLLALALIIIMGIVQICKGEFFWLEPKNAF
FT                   ENFQEPDIGLVALAFLQGSFAYGGWNFLNYVTEELVDPYKNLPRAIFISIPLVTFVYVF
FT                   ANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLF
FT                   FAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYG
FT                   VTVAGQIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTG
FT                   VPVYFLGVYWQHKPKCFNDFIKSLTLVSQKMCVVVYPQEGNSGAEETTDDLEEQHKPIF
FT                   KPTPVKDPDSEEQP"
FT   misc_difference 4035..4064
FT                   /gene="Slc7a8"
FT                   /note="polyA tail: 30 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 4064 BP; 928 A; 1175 C; 949 G; 1012 T; 0 other;
     cggagctcgg agccgacaag ggcgagaagg aaggggcgac cgcagcaggt ggaaacctga        60
     tccagagccg gcgagcaaga aagtacctga gcacggctcc tcctccgctc cctcagctaa       120
     gaagaactac ttttaccctc atcgtagaag agacttaagg gaaggtggag gcgatctgtt       180
     tcattaggag ggctgcaggg aaatcctgac cagagcaagc cgccgcccgg tacaccgagc       240
     agagcgatcc tgggcttctg aagataaacg ctttccggag aattccagct ggagtcgctg       300
     gtacagttct atttttgtat ttatatatat atatattctt tgccttccat ttaaaaacac       360
     ggcccttgtt tgttaggcag tgacacgtgt gactctcatt tgctgtcact tttagagggt       420
     aggagcgcac tctgttttcg gaaaagggcg ttctaattgg aaactctgtt tttccacata       480
     tctatacgtt tacacgcacg agcgtttaga aaaagactgc tctttttcgc tttgggtggt       540
     cggaacccta cggagaaaga tggaaaaggg agcccgccag cgaaacaaca ccgcgaagaa       600
     ccacccgggt tctgacacca gccctgaggc cgaggctagc tcgggagggg gcggagtagc       660
     cctgaagaaa gagatcggat tggtcagcgc ctgtggtatc attgtaggga acatcattgg       720
     ctccggaatc tttgtctcac cgaaaggtgt gctggaaaac gcgggctctg tgggccttgc       780
     tctcattgtc tggatcgtga caggcatcat cacagccgtg ggagctctct gctatgctga       840
     gctaggcgtc accatcccta agtctggagg tgattactct tatgtgaagg acatcttcgg       900
     aggactggct gggttcctgc ggctgtggat tgctgtgctg gtgatctacc ccaccaacca       960
     agctgtcatc gccctcacct tctccaacta cgtgctgcag ccgctcttcc ctacctgctt      1020
     cccccctgag tccggtctgc gactcctggc tgccatctgt ttgttgctcc tcacatgggt      1080
     caactgctcc agtgtccgat gggccacccg ggttcaagat atcttcacag ctgggaagct      1140
     cctggccctg gctctgatca tcatcatggg tattgtgcag atatgcaaag gagaattctt      1200
     ctggctggag ccaaagaatg catttgagaa tttccaagaa cctgacatcg gcctcgttgc      1260
     tctggcattc ctccagggct cctttgccta tggtggctgg aacttcctta attatgtgac      1320
     tgaggaactt gtggatcctt acaagaacct tcctagagcc atcttcatct ccatcccact      1380
     ggtcacattt gtgtacgtct ttgctaatat tgcatacgtc actgcaatgt ccccccagga      1440
     gctgctagcc tccaatgcag ttgctgtgac ttttggagag aaactcctcg gggtcatggc      1500
     ctggatcatg cccatttctg ttgccctgtc cacgtttggt ggagtcaatg gctccctctt      1560
     cacctcctcc cggctgttct ttgctggagc cagagaaggc caccttccca gtgtgttggc      1620
     catgatccac gtgaagcgct gcactccaat cccagccctg ctcttcacat gcctctccac      1680
     cctgctgatg ctggtcacca gtgacatgta cacactcatc aactatgtgg gcttcatcaa      1740
     ctacctcttc tatggggtaa cggttgcagg acagatagtc cttcgctgga agaagcctga      1800
     cattccccgc cccatcaagg tcagcctgct gtttcccatt atctacctgc tgttctgggc      1860
     cttcctgctg atcttcagcc tgtggtcaga gccagtggtg tgtggcattg gcctggccat      1920
     tatgctgaca ggagttcctg tctacttcct gggtgtctac tggcaacaca aacccaagtg      1980
     tttcaatgac ttcattaagt ccctaaccct agtgagtcag aagatgtgtg tggtcgtgta      2040
     tccccaggag gggaactcgg gggctgagga aacaactgat gacttagagg agcaacacaa      2100
     gcccatcttc aagcctactc ctgtcaagga cccggattcg gaggagcagc cctgaagact      2160
     gccagcctgt aactggccac tcctcccttc atcctttctg ccctgtattc ctgcctaggt      2220
     ccccccaaca cacacacaca cacacacaca cacacacaca cacacacaca cttctgtaag      2280
     gcaggggcca gacctgggtg tccacagtga gacattctaa acaaagaccc tgacctttgt      2340
     acccaaagaa ccaacctgct tccaggaccg aggcccatgg tcaaggtcaa tgcaccaggg      2400
     cctgcacaca ccctaaggtt tggaggagag tggaggtgcc attagtaccc tacagagccc      2460
     ttcctcctgg gcccatgcct gttaggtgcc tctaagaaac ctgggttcac tactatttct      2520
     tctccctaac cctgagccca ggcgaaactt ccattgggga caaaaggtgc agccccagca      2580
     atagctagga agacaactca gattgtcacc gttaagtcag ctggagagac tcagatgtgg      2640
     cttcattctc cagggaacca aaaggcagag ggtacacttc tctttgcctt cttctccact      2700
     ctgtactacc aagactccac tgcccagcct caacccacta cccagagagt tccctttcag      2760
     gaagcctcca ccccactgag ctaaggacca agaaggagga ctgccccacc cccagctcta      2820
     agccaagctt gtggaatata cagggaatgc tcagactgca gaagccaagc cctgccccac      2880
     ccctgccgct gcctcctatc cccttgtggt gccaaagctc cctgaagccg gaaaggcttc      2940
     tatttagtct aatagacatc tctctcttaa gggcaaagtg actctgcccc tccctgtccc      3000
     cctgtgaaag agcagtcacc ctcttatccc agcagctctt cccacccaca gctctgccta      3060
     ccaccctcac ccctttcctc tcctggacca cggctcaagg accaggtatg aaggatctcc      3120
     aagtccttca ggcctgaatt agcatcaaac cagccttaag tcatctccca tccaagaact      3180
     gggcctaaag tgctcccagt ttccaacctc caggacagac ctgatattaa gtccttccct      3240
     ggaaggaagg gtgcttcccc cttcccagca gtgctcagcc ctcaccctgg ggagaccatg      3300
     ttgttggggg gcacggggga gtgaggagaa tgttttccga aggcctgttc ttctcccctc      3360
     ccccaactca aacaacccta ccaccgttct gccatcccac ctgggacaag aggacagaat      3420
     ggcactgact ttggagacct tagaaaaacc ccttccagga gagcttctgg cctgtgctct      3480
     acaggaaggt gacagtgtct gccttctcct ggcagcctcc acacctgctg tgcttaggac      3540
     aggatccttt gatcacaagg cagaacccta accccggtcc atctactcaa actggaatat      3600
     gcagggacct ttccctggcc cctgccagca ggtctcccaa cttcctacct agctcaccct      3660
     acccctaact ggtgagaggc tgagtttggg ctgaattata tgcccttagg aatacagtcc      3720
     aggcaggctg tggggcctct ggggggccag ggaccacccg ctacccctca ttcctctcat      3780
     tccttcagcc tgtacctgcc cctccttgaa ttattgtctc tctctctctc tctttttttt      3840
     taagtggatg ccttactttt tggataacta tttttgaagc tggtatttct atttcttttg      3900
     gattttttaa tgtatggcgg tttgggggca gagctagaac cttaataatc tgtcactgag      3960
     ttcatttagg ttttaaattt tattggtttg ttttatggag tattttcttt tcatgtaata      4020
     aaattttaaa tggaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa                       4064
//


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