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EBI Dbfetch

ID   BC056990; SV 1; linear; mRNA; STD; MUS; 3883 BP.
XX
AC   BC056990;
XX
DT   18-SEP-2003 (Rel. 77, Created)
DT   15-OCT-2008 (Rel. 97, Last updated, Version 4)
XX
DE   Mus musculus gamma-aminobutyric acid (GABA-B) receptor, 1, mRNA (cDNA clone
DE   MGC:66925 IMAGE:6821442), complete cds.
XX
KW   MGC.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3883
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-3883
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (25-AUG-2003) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   MD5; a62d54d753cc1e147291f474592da8f0.
DR   Ensembl-Gn; ENSMUSG00000024462; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000025338; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000172792; mus_musculus.
XX
CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Dr. Jim Lin, University of Iowa
CC   cDNA Library Preparation: M. Bento Soares, University of Iowa
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Genome Sequence Centre,
CC   BC Cancer Agency, Vancouver, BC, Canada
CC   info@bcgsc.bc.ca
CC   Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
CC   Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
CC   Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
CC   Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
CC   Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
CC   Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
CC   Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
CC   Schein, Asim Siddiqui, Rob Holt, Marco Marra.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 126 Row: g Column: 16.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 33) are described in misc_difference features below.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3883
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="C57BL/6"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NIH_BMAP_FY0"
FT                   /clone="MGC:66925 IMAGE:6821442"
FT                   /tissue_type="Brain, mouse, 13.5,14.5,16.5,17.5 dpc"
FT                   /note="Vector: pYX-ASC"
FT                   /db_xref="taxon:10090"
FT   gene            1..3883
FT                   /gene="Gabbr1"
FT                   /note="synonyms: GABAbR1, bM573K1.1"
FT   CDS             50..2584
FT                   /codon_start=1
FT                   /gene="Gabbr1"
FT                   /product="Gabbr1 protein"
FT                   /db_xref="GOA:Q9WV18"
FT                   /db_xref="InterPro:IPR000436"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="InterPro:IPR002455"
FT                   /db_xref="InterPro:IPR002456"
FT                   /db_xref="InterPro:IPR017978"
FT                   /db_xref="InterPro:IPR028082"
FT                   /db_xref="MGI:MGI:1860139"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9WV18"
FT                   /protein_id="AAH56990.1"
FT                   /translation="MGPGGPCTPVGWPLPLLLVMAAGVAPVWASHSPHLPRPHPRVPPH
FT                   PSSERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCD
FT                   PGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRF
FT                   PTFFRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITF
FT                   RQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYAD
FT                   NWFKTYDPSINCTVEEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRH
FT                   PEETGGFQEAPLAYDAIWALALALNKTSGGGGRSGVRLEDFNYNNQTITDQIYRAMNSS
FT                   SFEGVSGHVVFDASGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPA
FT                   DQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTA
FT                   VGCSLALAAVFPLGLDGYHIGRSQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFT
FT                   KKEEKKERRKTLEPWKLYATVGLLVGMDILTLAIWQIVDPLHRTIETFAKEEPKEDIDV
FT                   SILPQLEHCSSKKMNTWLGIFYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYN
FT                   VAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQSEA
FT                   QDTMKTGSSTNNNEEEKSRLLEKENRELEKIIAEKEERVSELRHQLQSRQQIRSRRHPP
FT                   TPPDPSGGLPRGPSEPPDRLSCDGSRVHLLYK"
FT   misc_difference 1799
FT                   /gene="Gabbr1"
FT                   /note="'C' in cDNA is 'T' in the mouse genome; amino acid
FT                   difference: 'R' in cDNA, 'W' in the mouse genome."
FT   misc_difference 3103
FT                   /gene="Gabbr1"
FT                   /note="'T' in cDNA is 'G' in the mouse genome."
FT   misc_difference 3864..3883
FT                   /gene="Gabbr1"
FT                   /note="polyA tail: 20 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 3883 BP; 865 A; 1052 C; 976 G; 990 T; 0 other;
     cccctgagct gcccccaccc caaggaggcc gcccccgccc ctcctcgcca tgggcccggg        60
     gggaccctgt accccggtgg ggtggccgct gcctcttctg ctggtgatgg cggctggggt       120
     ggctccggtg tgggcctctc actcccctca tctcccgcgg cctcacccga gggtcccccc       180
     gcacccctcc tcagaacggc gtgcagtata catcggggcg ctgtttccca tgagcggggg       240
     ctggccgggg ggccaggcct gccagcctgc ggtggagatg gcgctggagg acgttaacag       300
     ccgcagagac atcctgccgg actacgagct caagcttatc caccacgaca gcaagtgcga       360
     cccagggcaa gccaccaagt acttgtatga actactctac aacgacccca tcaagatcat       420
     cctcatgccc ggctgcagct ctgtgtccac actggtagcc gaggctgccc ggatgtggaa       480
     ccttattgtg ctctcatatg gctccagctc accagccttg tcaaaccgac agcggtttcc       540
     aacgttcttt cggacacatc catccgccac actccacaat cccacccggg tgaaactctt       600
     cgaaaagtgg ggctggaaga agattgccac catccagcag actaccgagg tcttcacctc       660
     aacactggat gacctggagg agcgagtgaa agaggctggg attgagatca cttttcgaca       720
     gagtttcttc tcagatccag ctgtgcctgt taaaaacctg aagcgtcaag atgctcgaat       780
     catcgtggga cttttctatg agaccgaagc ccggaaagtt ttttgtgagg tctataagga       840
     acggctcttt gggaagaagt atgtctggtt tctcatcggg tggtatgctg acaactggtt       900
     caaaacctat gacccgtcaa tcaattgtac agtagaagag atgactgagg cggtggaggg       960
     ccatatcacc acggagattg tcatgctgaa ccctgccaac acccgaagca tttccaacat      1020
     gacatcacag gaatttgtgg agaaactaac caagcggctg aaaagacacc ctgaggagac      1080
     tggaggcttc caggaggcac cactggccta tgatgctatc tgggccttgg ctttggcctt      1140
     gaacaagacc tctggaggag gtggccgttc aggagtgcgc ctggaggact ttaactacaa      1200
     caaccagacc attacagacc aaatctaccg ggccatgaac tcctcctcct ttgagggtgt      1260
     ttctggccac gtggtctttg atgccagcgg ctcccggatg gcatggacgc ttatcgagca      1320
     gctacagggc ggcagctaca agaagatcgg ctactacgac agcaccaagg atgatctttc      1380
     ctggtccaaa acagacaagt ggatcggagg gtctccccca gccgaccaga ccttggtcat      1440
     caagacattc cgtttcctgt cacagaaact ctttatctcc gtctcagttc tctccagcct      1500
     gggcattgtt cttgctgttg tctgtctgtc ctttaacatc tacaactccc acgttcgtta      1560
     tatccagaac tcccagccca acctgaacaa tctgactgct gtgggctgct cactggcact      1620
     agctgctgtc ttcccccttg ggctggatgg ttaccacata gggagaagcc agttcccatt      1680
     tgtctgccag gcccgccttt ggctcttggg cttaggcttt agtctgggct atggctctat      1740
     gttcaccaag atctggtggg tccacacagt cttcacaaag aaggaggaga agaaggaacg      1800
     gaggaagacc ctagagcctt ggaaactgta cgccactgta ggcctgctgg tgggcatgga      1860
     tatcctgact cttgccatct ggcagattgt ggaccccttg caccgaacca ttgagacttt      1920
     tgccaaggag gaaccaaagg aagacattga tgtctccatt ctgccccagc tggagcactg      1980
     cagctccaag aagatgaata catggctcgg cattttctat ggttacaaag ggctgctgct      2040
     gctgctggga atctttcttg cttatgagac caaaagtgtg tccactgaaa agatcaatga      2100
     ccacagggcc gtgggcatgg ctatctacaa tgttgcggtc ctgtgtctca ttaccgctcc      2160
     tgtcaccatg atcctttcca gccagcagga cgcagccttc gcctttgcct ctctggccat      2220
     tgtgttctct tcctacatta ctctggttgt gctctttgtg cctaagatgc gcaggttgat      2280
     cactcgaggt gaatggcagt ctgaagcaca ggacacaatg aaaacaggat catccaccaa      2340
     caacaatgag gaagagaagt cccgactgtt ggagaaggaa aaccgtgaat tggaaaagat      2400
     catcgccgag aaagaggagc gtgtctctga actgcgccat cagctccagt ctcggcagca      2460
     gatccgctcc cggcgccacc ccccaacacc cccagacccc tctgggggcc ttcccagggg      2520
     accctcagag ccccctgacc ggcttagctg tgatgggagt cgagtacatt tgctttacaa      2580
     gtgagggtgt atcgagaagg atgaggccag caggggaggg aagggtgtgg ggagtgggtg      2640
     gggaactggg aagagggtgg agaacaagct ccaatccccc tcttagaaat acatgtcatt      2700
     ctgtgcatct ggggttatct gggtcttcag tactctggga aacagatggt tttctttctt      2760
     tccatataat tttatatcac cacttcacag ttttgtttga accctgcttg gagctattca      2820
     ctcatgactc cagaggggca tctcgtttgt ctcccatagg ctgtcttgta tagttgttac      2880
     tacagcaact cctgtcattt cagcagcagg ggtcttccta cattatcagg gctttctctc      2940
     catttctcag cattagaatc tccttccatc atccttctcc tccatgtccc tgtgtcttcc      3000
     tctccttaaa tgttgcttct tccaggggac tcaccacaca cacacacaca cacacacaca      3060
     cacacacaca cacacacacc atatcctctc ctctcctagg catctggatg tgtttctgtg      3120
     caaatatgtt cttttctgaa tgctgctatc acttgtgttt gcatatgctg cacctgtgag      3180
     tgcacagtgg ttgtgggtgt gtgcagtggt gtgcttgggt aggcgtgcat gatgtgttga      3240
     gcacaccaag ctgtcttcct catgtgcata tgtcatggtt gtctatgttt tacttgtgtg      3300
     cctccttgca ttgtgtattt tttctttgca ttttaatatc actatgtagt gtgtgtgtgt      3360
     gttgccctga ctcgtgtcag ggcaggcttc ctgtctcagc cttctgagta ttgggattac      3420
     agttgtctgc ctagctgatg tcctgtcttc tttcagcaga ggcatgtgca cccaacatgc      3480
     acatgattaa gcaggctctt ccccagtacg tgttttctga gccatgcata ccctctcctt      3540
     ggccttaggt ttactctcaa gtgttccctc tattctcatg cgtcccactt tgggtctgta      3600
     caatcatctc tcagaactac tgcatcttgg ttttcttttc tttgttgtca ttattattat      3660
     ttttcagaac taaggggaaa agaaatgggg acaggttgga ggctgtttcc agtggatagt      3720
     gggtgcacat ttgatcaaat gaaggcatgg acagatggac tgaccgggcg ggaggcagca      3780
     tccctttcac actgtggtgt ctcttggggg aaggatctcc ctgaatctca ataaagcagt      3840
     taacagtgtg actcagcacc tcacaaaaaa aaaaaaaaaa aaa                        3883
//


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