Dbfetch
ID BC053010; SV 1; linear; mRNA; STD; MUS; 4150 BP. XX AC BC053010; XX DT 06-JUN-2003 (Rel. 76, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus frizzled homolog 1 (Drosophila), mRNA (cDNA clone MGC:62195 DE IMAGE:5697795), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-4150 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4150 RG NIH MGC Project RA ; RT ; RL Submitted (02-JUN-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 13fb56b14773c1d692effd4ede44efde. DR Ensembl-Gn; ENSMUSG00000044674; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029269; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029232; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029182; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029250; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0028970; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0029700; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028383; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0028931; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029083; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0029045; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029173; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0029072; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0029731; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0028104; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028463; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000054294; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0070035; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0070107; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0070016; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0070031; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0069681; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0070506; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0070213; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0069617; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0069759; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0069670; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0069838; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0069692; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0070706; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0069681; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0068846; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 114 Row: e Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31981156. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4150 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FI0" FT /clone="MGC:62195 IMAGE:5697795" FT /tissue_type="Brain, enriched mouse brain 12.5dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..4150 FT /gene="Fzd1" FT /note="synonym: FZ-1" FT CDS 392..2320 FT /codon_start=1 FT /gene="Fzd1" FT /product="frizzled homolog 1 (Drosophila)" FT /db_xref="GOA:O70421" FT /db_xref="InterPro:IPR000539" FT /db_xref="InterPro:IPR015526" FT /db_xref="InterPro:IPR017981" FT /db_xref="InterPro:IPR020067" FT /db_xref="InterPro:IPR026548" FT /db_xref="InterPro:IPR036790" FT /db_xref="MGI:MGI:1196625" FT /db_xref="UniProtKB/Swiss-Prot:O70421" FT /protein_id="AAH53010.1" FT /translation="MAEEAAPSESRAAGRLSLELCAEALPGRREEVGHEDTASHRRPRA FT DPRRWASGLLLLLWLLEAPLLLGVRAQAAGQVSGPGQQAPPPPQPQQSGQQYNGERGIS FT IPDHGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFF FT LCSMYAPVCTVLEQALPPCRSLCERARQGCEALMNKFGFQWPDTLKCEKFPVHGAGELC FT VGQNTSDKGTPTPSLLPEFWTSNPQHGGGGYRGGYPGGAGTVERGKFSCPRALRVPSYL FT NYHFLGEKDCGAPCEPTKVYGLMYFGPEELRFSRTWIGIWSVLCCASTLFTVLTYLVDM FT RRFSYPERPIIFLSGCYTAVAVAYIAGFLLEDRVVCNDKFAEDGARTVAQGTKKEGCTI FT LFMMLYFFSMASSIWWVILSLTWFLAAGMKWGHEAIEANSQYFHLAAWAVPAIKTITIL FT ALGQVDGDVLSGVCFVGLNNVDALRGFVLAPLFVYLFIGTSFLLAGFVSLFRIRTIMKH FT DGTKTEKLEKLMVRIGVFSVLYTVPATIVIACYFYEQAFRDQWERSWVAQSCKSYAIPC FT PHLQGGGGVPPHPPMSPDFTVFMIKYLMTLIVGITSGFWIWSGKTLNSWRKFYTRLTNS FT KQGETTV" FT misc_difference 2990 FT /gene="Fzd1" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 4134..4150 FT /gene="Fzd1" FT /note="polyA tail: 17 bases do not align to the mouse FT genome." XX SQ Sequence 4150 BP; 889 A; 1158 C; 1139 G; 964 T; 0 other; gcggcggaga aggaggaggc ggaggcgcag gggggaccca gggcggctag gctgccgaga 60 gttgggcgct cctctgcccg gctgcgacca ctaacgcggc gccgcctgac aagagccaca 120 gcctgccgcg ggccagggaa gagggacgcg accccggcgc gcctggacca ctcttgctct 180 cctcgccgcc cgcgcttcat gaaccgcaag tttccgcggc ggcggcggcg gctgcgggac 240 gcggagcaga atcccgggga gcgggcagag agcggccgca ccccgacgga gggcacgggc 300 gaccagctct cccggatcac agtgggagcc accacccgcc gcgccgctgc ccgtcccagt 360 caatccgcgc cgaggaggga gccgaaaaag tatggctgag gaggcggcgc ctagcgagtc 420 ccgggccgcc ggccggctga gcttggaact ttgtgccgaa gcactcccgg gccggcggga 480 ggaggtgggg cacgaggaca cggccagcca ccgccgcccc cgggctgatc cccggcgttg 540 ggctagcggg ctgctgctgc tgctttggtt gctggaggct cctctgcttt tgggggtccg 600 agcgcaggcg gcgggccagg tatccgggcc gggccagcaa gccccgccgc cgccccagcc 660 ccagcagagc gggcagcagt acaacggcga acggggcatc tccatcccgg accacggcta 720 ctgccagccc atctccatcc cgctgtgcac ggacatcgcg tacaaccaga ccatcatgcc 780 caacctgctg ggccacacga atcaggagga cgccggtctg gaggtgcacc agttctaccc 840 tctggtgaag gtgcagtgct ccgccgagct caagttcttc ctgtgctcca tgtacgcgcc 900 tgtgtgcacc gtactggagc aggcgctacc gccctgccgc tccctgtgcg agcgcgcacg 960 ccagggctgc gaggcgctca tgaacaagtt cggcttccag tggccagaca cactcaagtg 1020 cgagaagttc ccggtgcacg gcgcaggaga gctgtgcgtg ggccagaaca cgtccgacaa 1080 aggcacccca actccctcct tgctaccaga gttctggacc agtaatccgc agcacggcgg 1140 cggtggttac cgcggcggct acccgggggg tgccgggacg gtggagcggg gaaagttctc 1200 ctgcccgcgc gccctcaggg tgccctccta cctcaactac cactttctgg gggagaagga 1260 ctgcggcgca ccctgcgaac ccaccaaggt ttacgggctc atgtacttcg ggccagagga 1320 gctgcgcttc tcgcgcacct ggataggcat ctggtccgtg ctgtgctgcg cctccacgct 1380 cttcacggtg ctcacgtacc tagtggacat gcggcgcttc agctacccgg aacggcccat 1440 cattttcctg tccggctgtt acacagcggt ggcggtggcc tacatcgctg gctttctgtt 1500 ggaggaccgg gtggtgtgca acgacaagtt tgcagaggac ggggcgcgca cggtggcgca 1560 gggcactaag aaagaaggct gcactatact ctttatgatg ctctacttct tcagcatggc 1620 cagctccatc tggtgggtga tcctgtccct cacctggttc ctggcagccg gcatgaagtg 1680 gggccacgaa gccatcgagg ccaactcaca gtatttccat ttagccgcct gggctgtgcc 1740 agccatcaaa actataacca tcttggcgtt gggccaggtg gatggcgacg tactgagcgg 1800 agtgtgtttt gtggggctca acaacgtgga cgcactgcgt ggctttgtgc tggcgcctct 1860 cttcgtttat ctgttcattg gcacttcttt cctgctggcc ggtttcgtgt cactcttccg 1920 catccgcacc atcatgaagc atgacggcac caagacagag aagctggaga agctcatggt 1980 gcgcatcgga gtcttcagtg tcctctacac tgtgccggcc accatcgtca tcgcctgcta 2040 cttctatgaa caggcctttc gggaccagtg ggagcgcagc tgggtggccc agagctgcaa 2100 gagttatgcc atcccttgcc ctcacctcca gggaggtgga ggagtcccac cacacccgcc 2160 catgagccca gactttacag tcttcatgat caagtatctc atgacgctga ttgtgggcat 2220 cacatcgggc ttctggatct ggtccggcaa gacactgaat tcctggagga agttctacac 2280 gaggcttacc aacagcaaac agggggagac taccgtctga aacccagact cttaccttac 2340 ccttttttgg cctgatccta gccatcgcct ggaagctggc cccaaggaat tcctgccaag 2400 cctggccact ccaggcttcc tcgccagcca ctgacttttg caggcccctt tcccaacaaa 2460 cagcacaggt tctgcaaaag cttccgtccc tggggtaaag gaacgagagg gcccaactga 2520 tcgaggtgta tgtgtatgtg cgtgtggacc gatctctcta gccctctctg ataccaggat 2580 tgtacgcttt tatgattgta aatagcctgt gtaagatttt tgtacgtata tttgtattta 2640 aagactatcg aacacgcagt ttttttttct ttttaaaaat gtttaattat ttagggcaat 2700 ttacgtattt ggagcttttc tcacttgccc ttttctgcag attgcagagg aggtaaaaca 2760 gagcacactt gactaagtgc tttgccctgt gccctcatct ttgtcaaggg agcatgggcc 2820 tgcctctcca gggtcatttc cttcagcatc tcccgcccct ccccttcctt gcttgcagtg 2880 ggaaatttta aggtgcagaa ctctgtaaag cttccagatc ccgaggtggg ccccgcccat 2940 tccagatcct ccccttttca gcggtagagt gtggatggct gtccctgtgg cttcctgatg 3000 ctgcttattt gagatccacc ttccagcttt attagaggac cccagtatgg gctctgccag 3060 ttgacccagc ctccctgtac cccggtgtcc cttgcccagt gtctttctcc ttgcacctaa 3120 gttgttcaga gggagtgcag taaccgaccg atagcgaact ttggagagtc tgacttttta 3180 tggatgagct catttttact ctctagtatc tggaacttgc tctgggtctg gtcatcatca 3240 tggaaagagc agcaagcttt gtgggttggg agaggctaaa gagagaggtt ataaaacatt 3300 agttctaatt gcattctgat gtctggcaac ctactttctt ccccctgtga tgctgcctgc 3360 ttctagattt tacccttcta tgaaatgcag acctcgaggt tgcctgggaa gcttggtgaa 3420 ggaatggttt accttcctta acaggatagt agaacataca cagagtatgg aaacctaagg 3480 agatttcagt gaagtggagt tactccaagt gaaacgctgt tttctggttt tagccaaact 3540 gcaattagat gtgtctttgc aatctaaaag ttgtacacaa tcaacaatac actttgctta 3600 ctcctcagca gcacattctg agggagaaac agtcacaccc ccgcagaaag cctggttgga 3660 cttccgaaga cagaggcggt ggactgacgg atgggtgaga gagacaaaca cgacctaggc 3720 atgcatgctg aaggggaagt gtgtccattc ctactgcatc ccatcttgtg tgctcctgtc 3780 tggatttacg gcagtgtgtc aaatgtaaat ctctcaaagc catttaaaaa tactcacttt 3840 agttatggat gaagaagagg agaaaagcag tcctcctgat tgtagtgttt aaaccttaag 3900 agtttatcac aaatgccgat acatacatag gacctaaatt tatctatgtc tgtcataccc 3960 taaaatgaca ttggtttttg gatttggtat gcattattat tgttattatt gttattatta 4020 ttctcaccac catgagatca tctatattta tagaggaata gaagtttata tatataaaat 4080 gccatatttt taatttcgca aataaaaaaa tgaaagtttt gtacaaaatt acaaaaaaaa 4140 aaaaaaaaaa 4150 //