Dbfetch
ID BC052701; SV 1; linear; mRNA; STD; MUS; 4116 BP. XX AC BC052701; XX DT 21-MAY-2003 (Rel. 75, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 7) XX DE Mus musculus Pbx/knotted 1 homeobox, mRNA (cDNA clone MGC:64705 DE IMAGE:5721441), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-4116 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-4116 RG NIH MGC Project RA ; RT ; RL Submitted (19-MAY-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 8f17b59d755ed06184eb108f8d2f8d47. DR Ensembl-Gn; ENSMUSG00000006705; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0023491; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0023449; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0023414; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0023454; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0023215; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023896; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022716; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0023190; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0023320; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0023290; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0023398; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0023308; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023938; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0022466; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022778; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000097352; mus_musculus. DR Ensembl-Tr; ENSMUST00000175806; mus_musculus. DR Ensembl-Tr; ENSMUST00000176701; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0046754; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0046730; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0046686; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0046693; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0046426; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0047175; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0046522; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0046363; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0046478; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0046440; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0046579; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0046419; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0047268; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0046114; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0045791; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Dr. Jim Lin, University of Iowa CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr. CC Thomas L. Casavant. CC Web site: http://genome.uiowa.edu CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A., CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K., CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J., CC Casavant,T., Soares,M.B. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: Plate: Row: Column: 0 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 34368579. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..4116 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /clone_lib="NIH_BMAP_FI0" FT /clone="MGC:64705 IMAGE:5721441" FT /tissue_type="Brain, enriched mouse brain 12.5dpc" FT /note="Vector: pYX-ASC" FT /db_xref="taxon:10090" FT gene 1..4116 FT /gene="Pknox1" FT /note="synonym: PREP1" FT misc_difference 1..11 FT /gene="Pknox1" FT /note="11 bases at the 5' end do not align to the mouse FT genome." FT CDS 69..1379 FT /codon_start=1 FT /gene="Pknox1" FT /product="Pbx/knotted 1 homeobox" FT /db_xref="GOA:O70477" FT /db_xref="InterPro:IPR001356" FT /db_xref="InterPro:IPR008422" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR032453" FT /db_xref="MGI:MGI:1201409" FT /db_xref="UniProtKB/Swiss-Prot:O70477" FT /protein_id="AAH52701.1" FT /translation="MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSDPDAEGVSPPPI FT ESQTPMDADKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKDG FT KPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGE FT PGSPYSPVQSQQIQSAITGTLSPQGIVVPASALQQGNVTMATVAGGTVYQPVTVVTPQG FT QVVTQALSPGTIRIQNSQLQLQLNQDLSILHQEDGSSKNKRGVLPKHATNVMRSWLFQH FT IGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKPAQNR FT PVQRFWPDSLASGVAQATPSELAMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVM FT MAGQSEDESVDSTEDEGGALAPTHISGLVLENSDSLQ" FT misc_difference 2255^2256 FT /gene="Pknox1" FT /note="1 base in the mouse genome, T, is not found in FT cDNA." FT misc_difference 2458 FT /gene="Pknox1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 3132 FT /gene="Pknox1" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 3539^3540 FT /gene="Pknox1" FT /note="1 base in the mouse genome, A, is not found in FT cDNA." FT misc_difference 4098..4116 FT /gene="Pknox1" FT /note="polyA tail: 19 bases do not align to the mouse FT genome." XX SQ Sequence 4116 BP; 1078 A; 1010 C; 1005 G; 1023 T; 0 other; ttggcaccca gacaccgtgt gcttctcgct caagatgatc tgatgtctga agtggactct 60 cactaaccat gatggcgaca cagacgctaa gtatagacag ctatcaagat ggacagcaaa 120 tgcaggtggt cacggagtta aaaacagagc aagatcccaa ctgctctgac ccagatgcag 180 aaggagtgag tcctcctccc atcgagtctc agaccccaat ggatgccgac aagcaggcca 240 tttataggca tccactattt ccgttgctag ctttgttgtt tgagaagtgt gagcagtcca 300 cacagggctc agaaggcacg acgtctgcca gcttcgatgt ggacattgag aactttgtca 360 ggaagcaaga aaaggatggg aaacccttct tctgtgaaga tccggaaact gacaacctaa 420 tggtgaaagc aatccaggtc ctgcgcattc atcttcttga actggagaag gttaatgagc 480 tctgtaaaga tttctgtagt cggtacattg cttgtctgaa gacaaaaatg aacagcgaga 540 ccttgttgag tggggagcct ggaagtccgt actcccctgt gcaatcccag cagattcaga 600 gtgccatcac aggcacgctc agcccccagg gaatcgtggt gccagcatca gccctacaac 660 agggaaatgt aaccatggca acagtggcag gtggcacagt gtaccagcct gtcaccgtcg 720 tcactccgca aggccaagtg gtcacgcagg cattatctcc tgggacaatt aggatccaga 780 actcacagct gcagttgcag ttgaaccaag acctcagcat cttgcatcaa gaggatggct 840 cctccaagaa caagaggggt gtcctgccga agcacgccac caacgtgatg cggtcctggc 900 tctttcagca catagggcat ccctacccaa cagaggatga gaaaaagcag attgctgctc 960 agacgaatct gaccctgctt caagtcaaca actggttcat caacgcgaga agacgaattc 1020 tccagccaat gttggattcc agctgctcag agactccaaa aacgaagaaa aaacctgctc 1080 agaacaggcc agttcagagg ttttggccag attctcttgc atcaggagtg gcacaagcaa 1140 cacccagcga gcttgccatg tcagaaggtg ccgttgtgac catcaccaca cctgtaaaca 1200 tgaatgtgga cagccttcag tccctgtcct cagacggggc caccctggcc gtacagcagg 1260 tcatgatggc agggcagagt gaggacgagt cggtggatag cacagaggat gagggcggcg 1320 ccctggcgcc cacacacatc agcgggctgg tgctggagaa cagcgactcc cttcagtagg 1380 aagcaccaac ggggtcagtg tggagctggg cgctggactc ttcactgttt gcacagcaag 1440 catcttacag ttgtctttgt aacctgtttt atatgtagat atagaaggtg cacttttgta 1500 tttcgcagca agcttcaaga cgtctttgcc ggtgcagcga cttccttcag atgtgcgtgt 1560 atgggttttt aatgctagaa acgtggcccc tgccccttga gtccttgacg agattaagga 1620 acagtgctgc cattttctaa aattctgcag ttgcaattga gtcgtgtggt ttacagcagg 1680 tctgggggcg gctgctggtg ccgctcacag gtctgaaaga tgacctgcac gcaggctgca 1740 gagcgagagg gctctggccc cggtgggctg tgggtgccca ccacacactt cagttctctc 1800 aggcagcatt tgcctgtttc atttgctata tagaaaaaga aactcctatt tttaccttgc 1860 tgggattatt ggataaaaag ctatttttat aaatcagtta ttaattggat tatgactata 1920 ttgaggataa atttctagag aagcaacagc acatgcttgt ctttcgattc ggaatgttct 1980 gaaaggcggc cacctgctca tggtctcctg ctctctgggg aggagagggc tcgcctcagc 2040 tgctaaaagg aaacaactgt caagtgagct tttgacatct ccagtttctg ctcatgtgtg 2100 atgcagactg ctacatttta cactcgctag agcatcttac acagtgtact cagtaggacg 2160 tacggtaagt gagggctctg ccacgcctag tctgactgca gttccatggc tgcctggcta 2220 tgttaactgg gtggtaattt tagatttttt tttttagtta aaacctgtta tatagagaat 2280 gtttattata aactaatata aagtgtgttc tgccccactg gctcagagct ggtgtaaaca 2340 gcaaacacct aaactgtctt tcttactggc agacacctag aagttagaac catggctgta 2400 acgtggcggt ggggcccact ggtggctctc actgtcactc actctccagg ctcctcctcc 2460 tctctgttac cactacagac tcaggacagt ttgaggacct catttctgag tgtcaaggct 2520 gagatttggt ttggtttgtt tgggtctact tgggaagctt tttcttagga aacaggcatc 2580 tgtcttcaca gtggtaccta ggccacctgc agatagggaa cagctgtcta ggggtccctg 2640 ccttgggccc cacggttacc ccacggttac ctctttagct aattcaggaa tagttcacca 2700 tcaccccaaa tgtcttgatt ctcttcagcc attgagcaca cctgaacagc caagtagtca 2760 gcaaaaagaa tgggggctcc gtttgaacca cttaaggtgc gtccaagaca gcaaaataaa 2820 acccccagaa cttgccagca actcctttga ggagagaata ctatttcaag cagtctttcc 2880 cttacctatt tacaaactgt tttaacagtt taagtccggc atacaaaagc ctgcacgatc 2940 agctggctct attaggttta gagcagaagt acatctctct tgtgagccct gcagagctct 3000 gccagtcccc aaaatggaag cacagcccct gctgcaccag ctggtggcgc tctagctggg 3060 attcgaacac catgctctac cgtgtccttt ccagttgaaa tcatctttcc taagcacaga 3120 actctagcct gttaaatcaa aggaatatca tgaagatcgt aagagaaccc caggcacggt 3180 gacacactcc tgtaatccca acactcagga acctgagaca ggaggcaagc ctgggctact 3240 tgaccctgtc ttaaaaaaaa aaagctagta aaagagctgg cacagggtca tatcctttca 3300 cctccccgtg cacagagatg cttttaagtg ctccccatga ggcgagccat gctggttcat 3360 agagtccctg cccagcagat ttggtgtctg ccagttgcac ctttgagaca cctgcttgct 3420 gggcacaatg gcatattcct gtaaacaagc acttaggagg ctgaagcagg aggattgctg 3480 caaggtcgag ttggcctctg gtgtgtagtg aaacccagtt tcaaaaaaaa aaaaaaaaat 3540 cgagcaaaac tcctgctcgc ctttccttgg ccagtgcaga aaacctttga gctttgttta 3600 aatggtcaga ctcccaaaca ttggagcctt ttgaatgtgt tctgagacct acagtcaact 3660 cgtgtcattc ctgctgtttg gctgtctagc agaaatctag actggctgac ccactcctcc 3720 ggtgggctca ggttttctgc tttcttgatt ccagattgtc aaatagaagt gtatatgcaa 3780 tatgcactgt gacccttgcg gctagggctg acgggccact gtgtagcctg ctgggtggcc 3840 agtgcacctg tgggggcagc gggagacttg ctcctccccc atggctggca gggaaatgcc 3900 catcccagag gcccctcccg caggttgtga ctggaacaca gcaggctgcc ttcttcagtt 3960 aagttcggtc tttgaaactg acaatcttta aaatgtgaat actgtaacaa tatgttttct 4020 tggattgttg tctttaaaag gatttttgtg aagcaattga tttatcaaag aaaaaaaaaa 4080 ttaaaaccag aaacatgaaa aaaaaaaaaa aaaaaa 4116 //