Dbfetch
ID BC046991; SV 1; linear; mRNA; STD; MUS; 3185 BP. XX AC BC046991; XX DT 24-FEB-2003 (Rel. 74, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 11) XX DE Mus musculus matrix metallopeptidase 9, mRNA (cDNA clone MGC:54599 DE IMAGE:6309245), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3185 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3185 RG NIH MGC Project RA ; RT ; RL Submitted (14-FEB-2003) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e1a55ac0b3f2d4ef5d71bd81770a95d3. DR Ensembl-Gn; ENSMUSG00000017737; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0026883; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0026850; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0026821; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0026859; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0026601; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0027306; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0026059; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0026578; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0026716; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0026682; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0026818; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0026701; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0027363; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0025796; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0026132; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000017881; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0059233; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0059259; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0059205; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0059192; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0058891; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0059664; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0059162; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0058862; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0058966; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0058947; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0059077; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0058925; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0059849; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0058730; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0058170; mus_musculus_wsbeij. DR EuropePMC; PMC2906514; 20657842. DR EuropePMC; PMC4353714; 25751421. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Susan L. Sullivan, PhD. CC cDNA Library Preparation: ResGen, Invitrogen Corp CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 100 Row: b Column: 8 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31560795. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..3185 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_129" FT /clone="MGC:54599 IMAGE:6309245" FT /tissue_type="Olfactory epithelium, neonatal mouse, FT C57Bl/6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3185 FT /gene="Mmp9" FT /note="synonyms: MMP-9, B/MMP9, protease, zymogen, FT pro-MMP-9" FT CDS 7..2199 FT /codon_start=1 FT /gene="Mmp9" FT /product="matrix metallopeptidase 9" FT /db_xref="GOA:P41245" FT /db_xref="InterPro:IPR000562" FT /db_xref="InterPro:IPR000585" FT /db_xref="InterPro:IPR001818" FT /db_xref="InterPro:IPR002477" FT /db_xref="InterPro:IPR006026" FT /db_xref="InterPro:IPR006970" FT /db_xref="InterPro:IPR013806" FT /db_xref="InterPro:IPR018486" FT /db_xref="InterPro:IPR018487" FT /db_xref="InterPro:IPR021158" FT /db_xref="InterPro:IPR021190" FT /db_xref="InterPro:IPR024079" FT /db_xref="InterPro:IPR033739" FT /db_xref="InterPro:IPR036365" FT /db_xref="InterPro:IPR036366" FT /db_xref="InterPro:IPR036375" FT /db_xref="InterPro:IPR036943" FT /db_xref="MGI:MGI:97011" FT /db_xref="UniProtKB/Swiss-Prot:P41245" FT /protein_id="AAH46991.1" FT /translation="MSPWQPLLLALLAFGCSSAAPYQRQPTFVVFPKDLKTSNLTDTQL FT AEAYLYRYGYTRAAQMMGEKQSLRPALLMLQKQLSLPQTGELDSQTLKAIRTPRCGVPD FT VGRFQTFKGLKWDHHNITYWIQNYSEDLPRDMIDDAFARAFAVWGEVAPLTFTRVYGPE FT ADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGAGVQGDAHFDDDELWSLGKGVVIPTYY FT GNSNGAPCHFPFTFEGRSYSACTTDGRNDGTPWCSTTADYDKDGKFGFCPSERLYTEHG FT NGEGKPCVFPFIFEGRSYSACTTKGRSDGYRWCATTANYDQDKLYGFCPTRVDATVVGG FT NSAGELCVFPFVFLGKQYSSCTSDGRRDGRLWCATTSNFDTDKKWGFCPDQGYSLFLVA FT AHEFGHALGLDHSSVPEALMYPLYSYLEGFPLNKDDIDGIQYLYGRGSKPDPRPPATTT FT TEPQPTAPPTMCPTIPPTAYPTVGPTVGPTGAPSPGPTSSPSPGPTGAPSPGPTAPPTA FT GSSEASTESLSPADNPCNVDVFDAIAEIQGALHFFKDGWYWKFLNHRGSPLQGPFLTAR FT TWPALPATLDSAFEDPQTKRVFFFSGRQMWVYTGKTVLGPRSLDKLGLGPEVTHVSGLL FT PRRLGKALLFSKGRVWRFDLKSQKVDPQSVIRVDKEFSGVPWNSHDIFQYQDKAYFCHG FT KFFWRVSFQNEVNKVDHEVNQVDDVGYVTYDLLQCP" FT misc_difference 3140..3185 FT /gene="Mmp9" FT /note="polyA tail: 46 bases do not align to the mouse FT genome." XX SQ Sequence 3185 BP; 723 A; 929 C; 806 G; 727 T; 0 other; ctcaccatga gtccctggca gcccctgctc ctggctctcc tggctttcgg ctgcagctct 60 gctgcccctt accagcgcca gccgactttt gtggtcttcc ccaaagacct gaaaacctcc 120 aacctcacgg acacccagct ggcagaggca tacttgtacc gctatggtta cacccgggcc 180 gcccagatga tgggagagaa gcagtctcta cggccggctt tgctgatgct tcagaagcag 240 ctctccctgc cccagactgg tgagctggac agccagacac taaaggccat tcgaacacca 300 cgctgtggtg tcccagacgt gggtcgattc caaaccttca aaggcctcaa gtgggaccat 360 cataacatca catactggat ccaaaactac tctgaagact tgccgcgaga catgatcgat 420 gacgccttcg cgcgcgcctt cgcggtgtgg ggcgaggtgg cacccctcac cttcacccgc 480 gtgtacggac ccgaagcgga cattgtcatc cagtttggtg tcgcggagca cggagacggg 540 tatcccttcg acggcaagga cggccttctg gcacacgcct ttccccctgg cgccggcgtt 600 cagggagatg cccatttcga cgacgacgag ttgtggtcgc tgggcaaagg cgtcgtgatc 660 cccacttact atggaaactc aaatggtgcc ccatgtcact ttcccttcac cttcgaggga 720 cgctcctatt cggcctgcac cacagacggc cgcaacgacg gcacgccttg gtgtagcaca 780 acagctgact acgataagga cggcaaattt ggtttctgcc ctagtgagag actctacacg 840 gagcacggca acggagaagg caaaccctgt gtgttcccgt tcatctttga gggccgctcc 900 tactctgcct gcaccactaa aggccgctcg gatggttacc gctggtgcgc caccacagcc 960 aactatgacc aggataaact gtatggcttc tgccctaccc gagtggacgc gaccgtagtt 1020 gggggcaact cggcaggaga gctgtgcgtc ttccccttcg tcttcctggg caagcagtac 1080 tcttcctgta ccagcgacgg ccgcagggat gggcgcctct ggtgtgcgac cacatcgaac 1140 ttcgacactg acaagaagtg gggtttctgt ccagaccaag ggtacagcct gttcctggtg 1200 gcagcgcacg agttcggcca tgcactgggc ttagatcatt ccagcgtgcc ggaagcgctc 1260 atgtacccgc tgtatagcta cctcgagggc ttccctctga ataaagacga catagacggc 1320 atccagtatc tgtatggtcg tggctctaag cctgacccaa ggcctccagc caccaccaca 1380 actgaaccac agccgacagc acctcccact atgtgtccca ctatacctcc cacggcctat 1440 cccacagtgg gccccacggt tggccctaca ggcgccccct cacctggccc cacaagcagc 1500 ccgtcacctg gccctacagg cgccccctca cctggcccta cagcgccccc tactgcgggc 1560 tcttctgagg cctctacaga gtctttgagt ccggcagaca atccttgcaa tgtggatgtt 1620 tttgatgcta ttgctgagat ccagggcgct ctgcatttct tcaaggacgg ttggtactgg 1680 aagttcctga atcatagagg aagcccatta cagggcccct tccttactgc ccgcacgtgg 1740 ccagccctgc ctgcaacgct ggactccgcc tttgaggatc cgcagaccaa gagggttttc 1800 ttcttctctg gacgtcaaat gtgggtgtac acaggcaaga ccgtgctggg ccccaggagt 1860 ctggataagt tgggtctagg cccagaggta acccacgtca gcgggcttct cccgcgtcgt 1920 ctcgggaagg ctctgctgtt cagcaagggg cgtgtctgga gattcgactt gaagtctcag 1980 aaggtggatc cccagagcgt cattcgcgtg gataaggagt tctctggtgt gccctggaac 2040 tcacacgaca tcttccagta ccaagacaaa gcctatttct gccatggcaa attcttctgg 2100 cgtgtgagtt tccaaaatga ggtgaacaag gtggaccatg aggtgaacca ggtggacgac 2160 gtgggctacg tgacctacga cctcctgcag tgcccttgaa ctagggctcc ttctttgctt 2220 caaccgtgca gtgcaagtct ctagagacca ccaccaccac caccacacac aaaccccatc 2280 cgagggaaag gtgctagctg gccaggtaca gactggtgat ctcttctaga gactgggaag 2340 gagtggaggc aggcagggct ctctctgccc accgtccttt cttgttggac tgtttctaat 2400 aaacacggat ccccaacctt ttccagctac tttagtcaat cagcttatct gtagttgcag 2460 atgcatccga gcaagaagac aactttgtag ggtggattct gaccttttat ttttgtgtgg 2520 cgtctgagaa ttgaatcagc tggcttttgt gacaggcact tcaccggcta aaccacctct 2580 cccgactcca gcccttttat ttattatgta tgaggttatg ttcacatgca tgtatttaac 2640 ccacagaatg cttactgtgt gtcgggcgcg gctccaaccg ctgcataaat attaaggtat 2700 tcagttgccc ctactggaag gtattatgta actatttctc tcttacattg gagaacacca 2760 ccgagctatc cactcatcaa acatttattg agagcatccc tagggagcca ggctctctac 2820 tgggcgttag ggacagaaat gttggttctt ccttcaagga ttgctcagag attctccgtg 2880 tcctgtaaat ctgctgaaac cagaccccag actcctctct ctcccgagag tccaactcac 2940 tcactgtggt tgctggcagc tgcagcatgc gtatacagca tgtgtgctag agaggtagag 3000 ggggtctgtg cgttatggtt caggtcagac tgtgtcctcc aggtgagatg acccctcagc 3060 tggaactgat ccaggaagga taaccaagtg tcttcctggc agtctttttt aaataaatga 3120 ataaatgaat atttacttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3180 aaaaa 3185 //