Dbfetch
ID BC043053; SV 1; linear; mRNA; STD; MUS; 2898 BP.
XX
AC BC043053;
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DT 22-MAR-2003 (Rel. 75, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 11)
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DE Mus musculus valosin containing protein, mRNA (cDNA clone MGC:57954
DE IMAGE:6418662), complete cds.
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KW MGC.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2898
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-2898
RG NIH MGC Project
RA ;
RT ;
RL Submitted (09-JAN-2003) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR MD5; e62ef726385d25c5c108c4919d7c0576.
DR Ensembl-Gn; ENSMUSG00000028452; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0028196; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0028152; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0028104; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0028172; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0027894; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0028613; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0027334; mus_musculus_casteij.
DR Ensembl-Gn; MGP_FVBNJ_G0027976; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0028108; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0028649; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0027060; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0027414; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000030164; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0065244; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0065290; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0065186; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0065220; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0064895; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0065689; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0065206; mus_musculus_casteij.
DR Ensembl-Tr; MGP_FVBNJ_T0064901; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0065077; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0065865; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0064742; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0064104; mus_musculus_wsbeij.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Dr. Jim Lin, University of Iowa
CC cDNA Library Preparation: M. Bento Soares, University of Iowa
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: University of Iowa, Dr. M. Bento Soares and Dr.
CC Thomas L. Casavant.
CC Web site: http://genome.uiowa.edu
CC Contact: bento-soares@uiowa.edu; tom-casavant@uiowa.edu
CC Bonaldo,M.F., Akabogu,I., Bair,T., Bair,J., Crouch,K., Davis,A.,
CC Fishler,K., Keppel,C., Kucaba,T., Lebeck,M., Melo,A., Schaefer,K.,
CC Scheetz,T., Smith,C., Snir,E., Tack,D., Trout,K., Walters,J.,
CC Casavant,T., Soares,M.B.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: Plate: Row: Column: 0.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
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FH Key Location/Qualifiers
FH
FT source 1..2898
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="C57BL/6"
FT /mol_type="mRNA"
FT /clone_lib="NIH_BMAP_EW0"
FT /clone="MGC:57954 IMAGE:6418662"
FT /tissue_type="Brain, mouse 15.5 dpc"
FT /note="Vector: pYX-ASC"
FT /db_xref="taxon:10090"
FT gene 1..2898
FT /gene="Vcp"
FT /note="synonyms: p97, CDC48, 3110001E05"
FT CDS 234..2654
FT /codon_start=1
FT /gene="Vcp"
FT /product="valosin containing protein"
FT /db_xref="GOA:Q01853"
FT /db_xref="InterPro:IPR003338"
FT /db_xref="InterPro:IPR003593"
FT /db_xref="InterPro:IPR003959"
FT /db_xref="InterPro:IPR003960"
FT /db_xref="InterPro:IPR004201"
FT /db_xref="InterPro:IPR005938"
FT /db_xref="InterPro:IPR009010"
FT /db_xref="InterPro:IPR015415"
FT /db_xref="InterPro:IPR027417"
FT /db_xref="InterPro:IPR029067"
FT /db_xref="InterPro:IPR041569"
FT /db_xref="MGI:MGI:99919"
FT /db_xref="PDB:1E32"
FT /db_xref="PDB:1R7R"
FT /db_xref="PDB:1S3S"
FT /db_xref="PDB:2PJH"
FT /db_xref="PDB:3CF0"
FT /db_xref="PDB:3CF1"
FT /db_xref="PDB:3CF2"
FT /db_xref="PDB:3CF3"
FT /db_xref="UniProtKB/Swiss-Prot:Q01853"
FT /protein_id="AAH43053.1"
FT /translation="MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPK
FT MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQP
FT CPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEF
FT KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVEL
FT PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE
FT SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH
FT VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV
FT ANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ
FT SNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFY
FT GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF
FT DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR
FT PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA
FT CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIR
FT KYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG"
FT misc_difference 2863..2898
FT /gene="Vcp"
FT /note="polyA tail: 36 bases do not align to the mouse
FT genome."
XX
SQ Sequence 2898 BP; 762 A; 658 C; 789 G; 689 T; 0 other;
cgtcgtttga ttagtcgctg cccccctcgc ggattaggag ctagcgtctc ccgcccgccc 60
gcctgccgcc ccggtgcccc tgggaggaag cgagagggag gctgccagag ggtttgtcac 120
tgctgttgct cctccgcctc agcgagtcca gccccggcct agtcggtcgc ctgcctttct 180
catagccgtt accctcaggc cgccacagcc gccgaccggg agaggcgcgc gccatggcct 240
ctggagccga ttcaaaaggt gatgatttat caacagccat tctcaaacag aagaaccgac 300
ccaatcggtt aattgttgat gaagccatca atgaagataa cagcgtggtg tccttgtccc 360
agcccaagat ggatgaactg cagttgttcc gaggtgacac ggtgttgcta aaaggaaaga 420
aaagacggga agctgtatgc attgttcttt ctgatgacac gtgttctgat gagaagattc 480
gaatgaatag agttgttcgg aataacctcc gagttcgcct aggagatgtc atcagcatcc 540
agccatgccc tgatgtaaag tatggcaaac gtatccacgt tctacccatc gatgacacag 600
tggaaggcat cactggcaat ctctttgagg tataccttaa gccgtacttc ctggaagctt 660
atcggcccat ccgtaaagga gatatttttc ttgtccgggg tgggatgcgt gctgtggagt 720
tcaaagttgt agagacagat cccagccctt actgtattgt tgctccagac acagtgatcc 780
actgtgaggg ggagccaatc aagcgagagg atgaggagga atccttgaat gaagtaggct 840
atgatgacat cggtggttgc aggaagcagc tagctcagat aaaggagatg gtggagctgc 900
cactgagaca tcctgcgctc tttaaggcga ttggtgtaaa gcctcctcgg ggaatcttgt 960
tgtatgggcc tcctgggaca gggaagaccc tgattgctcg agctgtggca aatgaaactg 1020
gagccttctt ctttctgatc aatggtcctg aaatcatgag caaattggct ggtgagtctg 1080
agagcaacct tcgtaaagcc tttgaggaag ctgaaaagaa tgctcctgct atcatcttca 1140
tcgatgagct tgatgccatt gcacccaaaa gagagaaaac tcatggggaa gtggagcgtc 1200
gcatcgtgtc tcagttgttg accctcatgg atggcctaaa gcagagagca catgtgatag 1260
ttatggcagc aaccaataga cccaacagca ttgacccagc cctacggcga tttggtcgct 1320
ttgacagaga ggtagatatt ggaatacctg atgctacagg acgtttggag attcttcaga 1380
tccataccaa gaacatgaaa ctggcagatg atgtggactt ggaacaggta gccaatgaga 1440
ctcatggtca tgttggtgct gatttggcag ccctatgttc agaggctgct ctgcaggcca 1500
tccggaaaaa aatggacctc attgacctag aagatgagac cattgatgct gaggtcatga 1560
attccctggc agttactatg gatgacttcc ggtgggcttt gagtcaaagc aacccatcag 1620
cacttcggga aactgtggta gaggtgccac aagtaacctg ggaagatatt ggaggcctgg 1680
aggatgtcaa acgtgagctt caggagttgg ttcagtatcc tgtggaacat ccagacaaat 1740
tcctcaaatt tggcatgact ccctccaaag gcgttctttt ctatggacct cctggctgtg 1800
ggaaaacctt actggctaaa gccattgcta atgaatgcca ggccaacttc atctccatca 1860
agggtcctga gctgcttacc atgtggtttg gggaatctga ggccaatgtc cgggaaattt 1920
ttgacaaggc acggcaagct gccccctgtg tactcttctt tgatgagtta gattcaattg 1980
ccaaggctcg aggtggtaat attggagatg gtggtggagc tgctgaccga gtcatcaatc 2040
agatcctgac agaaatggat ggcatgtcta caaaaaagaa tgtgtttatc attggagcta 2100
ccaacaggcc tgacatcatt gatcctgcta tcctaagacc tggccgtcta gatcagctca 2160
tttatatccc acttcctgat gagaagtccc gtgttgccat cctaaaagcc aatctgcgaa 2220
agtccccagt tgccaaggat gtggatttgg agttcctggc taagatgact aatggctttt 2280
ctggagctga tttgacagaa atttgccaac gggcttgtaa actggccatt cgtgaatcta 2340
ttgagagtga gattaggcga gaacgagaga ggcagacaaa tccatcggct atggaggtag 2400
aagaggacga tccagtgcct gagatccgca gagatcactt tgaggaagcc atgcgttttg 2460
cccgacgttc tgtcagcgat aatgacattc ggaagtatga aatgttcgcc cagacactgc 2520
agcagagtcg aggttttggc agcttcagat tcccttcagg gaaccagggt ggagctggtc 2580
ccagccaggg cagtggaggt ggcacaggtg gcagtgtgta cacagaagac aatgacgatg 2640
acctgtatgg ctaagtgatg tgccagcatg cagcgagctg gcctggctgg accttgttcc 2700
ctgggggagg gggcgcttgc ccaagaggga ccaggggtgt gcccatggcc tgttccattc 2760
ctcagtctga acagttcagc cccagtcaga ctctggacag gggtttcctg ttgcaaaaaa 2820
aaaaaattac aaaagcgata aaataaaagt gattttcatt tgaaaaaaaa aaaaaaaaaa 2880
aaaaaaaaaa aaaaaaaa 2898
//