Dbfetch
ID BC034839; SV 1; linear; mRNA; STD; MUS; 1165 BP. XX AC BC034839; XX DT 06-AUG-2002 (Rel. 72, Created) DT 23-MAR-2009 (Rel. 100, Last updated, Version 8) XX DE Mus musculus neuregulin 4, mRNA (cDNA clone MGC:40998 IMAGE:3372942), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1165 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1165 RG NIH MGC Project RA ; RT ; RL Submitted (29-JUL-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 01c4dfcfef72f800c52629b395ab36a3. DR Ensembl-Gn; ENSMUSG00000032311; mus_musculus. DR Ensembl-Gn; MGP_CASTEiJ_G0033844; mus_musculus_casteij. DR Ensembl-Tr; ENSMUST00000145784; mus_musculus. DR Ensembl-Tr; MGP_CASTEiJ_T0092617; mus_musculus_casteij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Marcello Bento Soares, Ph.D. CC cDNA Library Preparation: M. Bento Soares, University of Iowa CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Genome Sequence Centre, CC BC Cancer Agency, Vancouver, BC, Canada CC info@bcgsc.bc.ca CC Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson CC Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen CC Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel CC Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave CC Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth CC Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, CC Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR CC Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, CC Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 67 Row: m Column: 3 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 14030776 CC The stop codon of the CDS annotated on this record is located > 55 CC bases upstream of a splice junction, and therefore the mRNA is CC predicted to be subject to nonsense-mediated mRNA decay (NMD). CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 37) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1165 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="Soares_mammary_gland_NMLMG" FT /clone="MGC:40998 IMAGE:3372942" FT /tissue_type="Mammary gland, lactating mouse" FT /note="Vector: pT7T3-Pac" FT /db_xref="taxon:10090" FT gene 1..1165 FT /gene="Nrg4" FT CDS 148..390 FT /codon_start=1 FT /gene="Nrg4" FT /product="Nrg4 protein" FT /db_xref="GOA:I6L9B2" FT /db_xref="InterPro:IPR040180" FT /db_xref="MGI:MGI:1933833" FT /db_xref="UniProtKB/TrEMBL:I6L9B2" FT /protein_id="AAH34839.1" FT /translation="MPTDHEQPCGPRHRSFCLNGGICYVIPTIPSPFCRFYHLFLRHCL FT LKPFVQLGTLVYPVFLKEFIPLTRPKFSCSVFLNA" FT misc_difference 1146..1165 FT /gene="Nrg4" FT /note="polyA tail: 20 bases do not align to the mouse FT genome." XX SQ Sequence 1165 BP; 306 A; 280 C; 250 G; 329 T; 0 other; gttgctgaag tcctcagtgt tcaaacactt gtgaaacgct gcatgtctag caaaattttc 60 tttttttatg ggaatataaa tttctgttga ggtgctgatt ttcaacctta attcttccat 120 caagaatgaa actatttaaa aattaagatg ccaacagatc acgagcagcc ctgtggtccc 180 aggcacaggt cattttgcct caatgggggg atttgttatg tgatccctac tatccccagc 240 ccattctgta ggttttatca tttgtttcta agacattgcc tacttaaacc attcgtgcaa 300 ttgggcacct tggtgtaccc agtgtttctg aaggagttta ttccattgac gcgccccaag 360 ttctcatgca gtgtgttcct gaatgcttga aatctgtttt ctgcgaatcc ttggtgggat 420 ggctagaaac ctgtgaaaaa tcatgaaatc accaaatacc atgtgatgtg tatagtctct 480 ctcctctcca ctgacagctc aatcagggga agtgaactgt tgctggcttc tctttgtctt 540 attccaagtt gggtcatgag attttccctg caccctggga aggtgcattg aaaattacac 600 cggagcacgc tgcgaagagg tttttctccc aagctccagc atcccaagcg aaagtaatct 660 gtcggcagct ttcgtggtgc tggcggtcct cctcactctt accatcgcgg cgctctgctt 720 cctgtgcagg aagggccacc ttcagagggc cagttcagtc cagtgtgaga tcagcctggt 780 agagacaaac aataccagaa cccgtcacag ccacagagaa cactgaagac atacatcccc 840 agtgaagggc atcattacct acaaaggcgg actgtggacc atacgacgag agaagcccat 900 catcatggat gtgtcccatc atttctatgg cagtcccagg atctcactct tcttgatgct 960 ctactgtttg attgttcatc gttcacatac agaaatgacg ctggtttcct gtgttgacct 1020 tgcaccctgc tactgtcatc actggcctgg aagtcagcag tatagataag gctggccctg 1080 aattcaagag actcacctgt ttttgcctac tcagagttac tggaattaaa ggcataacaa 1140 cactaaaaaa aaaaaaaaaa aaaaa 1165 //