Dbfetch

ID   BC034056; SV 1; linear; mRNA; STD; MUS; 4326 BP.
XX
AC   BC034056;
XX
DT   09-JUL-2002 (Rel. 72, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 8)
XX
DE   Mus musculus desmoglein 2, mRNA (cDNA clone IMAGE:4036406), partial cds.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4326
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-4326
RA   Strausberg R.;
RT   ;
RL   Submitted (02-JUL-2002) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Cancer
RL   Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03,
RL   Bethesda, MD 20892-2590, USA
XX
DR   MD5; e77ef1d552d3a0e61df760a51e029031.
DR   Ensembl-Gn; ENSMUSG00000044393; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0024180; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0024144; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0024113; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0024144; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0023912; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0024587; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0023386; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0023880; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0024012; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0023978; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0024094; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0024006; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0024634; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0023131; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0023451; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000059787; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0049078; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0049054; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0049018; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0049017; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0048761; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0049511; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0048850; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0048684; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0048792; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0048759; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0048910; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0048759; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0049614; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0048449; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0048064; mus_musculus_wsbeij.
DR   EuropePMC; PMC2377275; 18435859.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 43 Row: b Column: 24.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4326
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="mix FVB/N, C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam5"
FT                   /clone="IMAGE:4036406"
FT                   /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
FT                   old, gross tissue."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            <1..4326
FT                   /gene="Dsg2"
FT   CDS             <1..2328
FT                   /codon_start=1
FT                   /gene="Dsg2"
FT                   /product="Dsg2 protein"
FT                   /db_xref="GOA:O55111"
FT                   /db_xref="InterPro:IPR002126"
FT                   /db_xref="InterPro:IPR009122"
FT                   /db_xref="InterPro:IPR009123"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR015919"
FT                   /db_xref="InterPro:IPR020894"
FT                   /db_xref="InterPro:IPR027397"
FT                   /db_xref="MGI:MGI:1196466"
FT                   /db_xref="UniProtKB/Swiss-Prot:O55111"
FT                   /protein_id="AAH34056.1"
FT                   /translation="EEMKKLDLSILVTNKAAFHKSILSKYKATPIPITVKVKNVVEGIH
FT                   FKSSVVSFRASEAMDRSSLSRSIGNFQVFDEDTGQAAKVTYVKVQDTDNWVSVDSVTSE
FT                   IKLVKIPDFESRYVQNGTYTAKVVAISKDHPQKTITGTIIITVEDVNDNCPVLVDSVRS
FT                   VCEDEPYVNVTAEDLDGAQNSAPFSFSIIDQPPGTAQKWKITHQESTSVLLQQSERKRG
FT                   RSEIPFLISDSQGFSCPERQVLQLTVCECLKGGGCVAAQYDNYVGLGPAAIALMILALL
FT                   LLLLVPLLLLICHCGGGAKGFTPIPGTIEMLHPWNNEGAPPEDKVVPSLLVADHAESSA
FT                   VRGGVGGAMLKEGMMKGSSSASVTKGQHELSEVDGRWEEHRSLLTAGATHHVRTAGTIA
FT                   ANEAVRTRATGSSRDMSGARGAVAVNEEFLRSYFTEKAASYNGEDDLHMAKDCLLVYSQ
FT                   EDTASLRGSVGCCSFIEGELDDLFLDDLGLKFKTLAEVCLGRKIDLDVDIEQRQKPVRE
FT                   ASVSAASGSHYEQAVTSSESAYSSNTGFPAPKPLHEVHTEKVTQEIVTESSVSSRQSQK
FT                   VVPPPDPVASGNIIVTETSYAKGSAVPPSTVLLAPRQPQSLIVTERVYAPTSTLVDQHY
FT                   ANEEKVLVTERVIQPNGGIPKPLEVTQHLKDAQYVMVRERESILAPSSGVQPTLAMPSV
FT                   AAGGQNVTVTERILTPASTLQSSYQIPSETSITARNTVLSSVGSIGPLPNLDLEESDRP
FT                   NSTITTSSTRVTKHSTMQHSYS"
FT   misc_feature    199..750
FT                   /gene="Dsg2"
FT                   /note="CA; Region: Cadherin repeat domain"
XX
SQ   Sequence 4326 BP; 1263 A; 1028 C; 973 G; 1062 T; 0 other;
     gaagaaatga agaagctaga cttgagcatc cttgtcacta acaaagcagc tttccacaag        60
     tccattctga gcaagtacaa ggccacgccc attcccatca ctgtcaaggt caagaacgtg       120
     gttgaaggca ttcatttcaa gagcagcgta gtctctttcc gagctagtga ggcaatggat       180
     agatccagcc tcagcaggtc gattggaaat tttcaagttt ttgatgaaga cactggtcaa       240
     gcagctaaag taacatatgt aaaagtacaa gacactgaca actgggtctc tgtggactcc       300
     gtcacttcag agattaagct tgtaaagatt cctgactttg aatctagata tgtccaaaat       360
     ggtacctaca ctgcaaaggt tgtggccata tccaaagatc atcctcaaaa aaccatcact       420
     ggcaccatca ttatcactgt tgaagacgtc aatgacaatt gtcccgtgct ggtggactct       480
     gtacggagtg tctgtgagga tgaaccatat gtgaatgtca ctgcagagga tttggatggg       540
     gcccagaaca gtgcaccatt cagcttctcc atcattgacc agcctcctgg aacggcacag       600
     aagtggaaaa taacgcacca ggaaagtacc agtgtgctgc tgcagcagag cgagcggaaa       660
     cgcgggagaa gtgagattcc cttcctcatt tccgacagcc agggcttcag ctgccccgaa       720
     aggcaggtcc ttcagctcac tgtatgcgag tgtctgaagg gcggtggctg tgtggctgca       780
     cagtatgaca actacgtcgg gttgggccct gccgccatcg ctctcatgat tctagcactc       840
     ctgctcctgc tcctggtgcc gctcttgctg ttgatatgcc actgtggagg gggcgccaaa       900
     ggcttcaccc ccattcctgg gacaatagag atgctgcacc cttggaataa tgaaggggca       960
     cctcctgagg acaaggtggt gccatcgctt ctggtggccg atcatgcaga gagctcggca      1020
     gtgagaggcg gcgtaggagg tgcgatgctc aaggaaggca tgatgaaagg cagcagctca      1080
     gcttccgtta ccaaagggca gcatgagctg tctgaggttg acggaagatg ggaagaacac      1140
     agaagcctcc tcaccgctgg ggccactcac catgtaagga cagcaggaac catcgctgcc      1200
     aacgaagccg taaggacaag agccacgggg tcttccagag acatgagtgg ggctcgagga      1260
     gccgttgccg tgaatgagga attcttaaga agttacttca cagagaaagc ggcctcctac      1320
     aatggggaag acgaccttca catggccaaa gactgccttc tcgtttactc tcaggaagac      1380
     acggcctccc tccgaggctc cgtcgggtgc tgcagtttca tcgagggaga actcgatgac      1440
     ctgttcctgg atgatcttgg ccttaaattc aagaccctag ctgaagtttg cctaggtcga      1500
     aagatcgatc tggatgtgga cattgaacag aggcagaagc cggtcagaga agcgagcgtg      1560
     agtgcagctt ctggctcgca ctatgagcaa gcggtaacca gctcagagag cgcgtactcc      1620
     tctaacaccg gcttccccgc ccccaaacct ctgcacgaag tgcacacaga gaaagtcaca      1680
     caggaaatcg tcactgagag ctctgtatct tccaggcaga gtcagaaggt agtaccgcca      1740
     cctgatcctg tggcttctgg taatattata gtgacggaaa cttcctatgc caaaggctca      1800
     gcagtgccac ccagcactgt gctcctggct cccagacagc cacagagcct gatcgtgaca      1860
     gagagggtgt atgctccaac ctccaccttg gtggatcagc attatgccaa tgaagaaaaa      1920
     gtccttgtta ccgaacgagt gatccagcct aatgggggca tccctaagcc ccttgaggtc      1980
     acccagcatc tgaaagatgc acaatatgta atggtgaggg aaagagagag catccttgct      2040
     cccagctcag gcgtgcagcc cactctggca atgcccagcg tggcagcagg aggacagaat      2100
     gtcaccgtga cagaaagaat actgactcct gcttccactc tgcagtccag ctaccagatt      2160
     cccagtgaaa cctccatcac ggctaggaac actgtgctct ctagtgtggg aagcataggt      2220
     cctctgccca atttagatct agaggaatct gatcgtccca attctactat aaccacatct      2280
     tccaccaggg tcaccaagca tagcaccatg caacattctt actcctaaag agaagccagc      2340
     cgcagtcgga tctggacctt aactagcatc cactggatgt gtgtgtccat gcccctaatg      2400
     ttataacagc cacacaagac ttgcacattg gaaaaactta ttgacatgcc aaacaaagac      2460
     accatgtctc aggtagggtt gtatttcagc aatgctctgt gattattggg ggatggagtt      2520
     aagatgctag ttcctcagtg ccttttagag tactgtgcaa gcaatactcg caaacaggac      2580
     atgtaaaatt gagttccaag aacttacaaa actaaagcag ggtatctaat tcatcaggtc      2640
     caggaggctg ggtctctgca caatgcattg atattcagca gggacagttc caccccttat      2700
     attacagagc cacacaggtt ataggtacca aatagctcat ccacccagag acacatctcc      2760
     actctttcat ctccactgga accctgagta caccagaggg aagaaagaaa gagagagaga      2820
     gagagagaga gagagagaga gagagagaga gagaacactg gagccctttt taactgtcta      2880
     aagttgacag actttagaac actgtcagga taagaataca tagtgtgtat ttctctgcac      2940
     ataccatgtc ctgtgagctg aaaaaaaaat gacttcatat ttttcctcac tttccaaagg      3000
     tcctaaaaat attgagcatt tcaaattagt tttataatct aactaatcat gatagccagg      3060
     tgtggtggtg caggccttta gtccagaact caagaagcag gcaaatctct ccgggttcga      3120
     ggccaatctg gtctatataa agggttccag gacacccagg gctacataga aaaaccctgt      3180
     ctcaaaaaag caagcaaaac aaacaacaac aaatactagt aatccaggat aaaattccta      3240
     gttaactttt ctgcaatgtg atggcagtct atgaaggaaa cgtcttcata gatctatttc      3300
     ctatctacaa gttcatgcac ttaggggctg cacaaatgac caagtggcta agagcacatt      3360
     actgactgct cttgcagaga accctacttc agtttctgac aactacatac tatggctcac      3420
     aaccacctct aattccaact caagggatct gatgctctct aatggactcc aaagacattg      3480
     cactcacagt tgagtggtta gtgagcagcc gagttccact cttgcatcct cagtgcctct      3540
     cacagccgcc atatccccct cttgccattg accgacttcc atcctcagtg cctctcacag      3600
     aaccccagcc attatctatg gcgcaagata agttccacaa accactcttt tacaattagt      3660
     caaatatcaa gaagactcag tagttcagta attctgaatt atgaacttta ccatcttgat      3720
     atctgacata attggctggt catgagttga tatgcatgaa gtaaatactt tatcataaaa      3780
     acccttgagt aactggccca atttcattca acttccttgc cttgattctt tcaagaagtt      3840
     gtttggattc tacagaacat caatggaaaa tattacataa caaaaatttg cttctaaaaa      3900
     ataatgtttc aaaacctatg tatatatcag tcataattta tatccatgta tctcacccaa      3960
     aaaatgttaa gagccatcaa atttctggat attttgctag gaaaatgaaa ttctacactt      4020
     attttttgta gacttttttt taaatgctgt ttacatgaat tgtattttgg aaaaaatatt      4080
     atactgtgca ccctgtgatg catgaagtga ttttatgtat ggtctgctat gtgggcagag      4140
     gtcaccttat tcctatgatc tggaattgtt tactttctac aaagtaagct ttgtggggat      4200
     tttgctttca ttttctttgt agctgatgtt attttaccag gtgtgcagca ggaattacac      4260
     cactgtgtgg aattataaat acatcccatg tgcaaaaaaa acaaaaaaaa caaaaaaaaa      4320
     aaaaaa                                                                 4326
//