Dbfetch
ID BC031126; SV 1; linear; mRNA; STD; MUS; 2753 BP. XX AC BC031126; XX DT 14-JUN-2002 (Rel. 72, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus TAR DNA binding protein, mRNA (cDNA clone MGC:36366 DE IMAGE:4977114), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2753 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2753 RG NIH MGC Project RA ; RT ; RL Submitted (03-JUN-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; a8d666aa920ec03fa0f9b3e7b6e8e55f. DR Ensembl-Gn; ENSMUSG00000041459; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029129; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029094; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029042; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029110; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0028831; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0029559; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028244; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0028793; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0028942; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0028906; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029032; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0028933; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0029591; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0027964; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028324; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000084125; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0069263; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0069327; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0069233; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0069244; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0068913; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0069740; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0069381; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0068853; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0068989; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0068889; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0069076; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0068906; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0069924; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0068877; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0068077; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 59 Row: k Column: 13 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31543841. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:36366 IMAGE:4977114" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2753 FT /gene="Tardbp" FT CDS 93..1337 FT /codon_start=1 FT /gene="Tardbp" FT /product="TAR DNA binding protein" FT /db_xref="GOA:Q921F2" FT /db_xref="InterPro:IPR000504" FT /db_xref="InterPro:IPR012677" FT /db_xref="InterPro:IPR035979" FT /db_xref="InterPro:IPR041105" FT /db_xref="MGI:MGI:2387629" FT /db_xref="PDB:3D2W" FT /db_xref="UniProtKB/Swiss-Prot:Q921F2" FT /protein_id="AAH31126.1" FT /translation="MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRN FT PVSQCMRGVRLVEGILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTS FT DLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS FT QRHMIDGRWCDCKLPNSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI FT PKPFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPG FT GFGNQGGFGNSRGGGAGLGNNQGGNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGML FT ASQQNQSGPSGNNQSQGSMQREPNQAFGSGNNSYSGSNSGAPLGWGSASNAGSGSGFNG FT GFGSSMDSKSSGWGM" FT misc_difference 2736..2753 FT /gene="Tardbp" FT /note="polyA tail: 18 bases do not align to the mouse FT genome." XX SQ Sequence 2753 BP; 750 A; 466 C; 712 G; 825 T; 0 other; cggagcggta gcgcggctgt tgtcggattc cttcccgtct gtgcttcctc cttgtgcttc 60 ctagcagtgg cctagcggag atttaagcaa agatgtctga atatattcgg gtaacagaag 120 atgagaacga tgaacccatt gaaataccat cagaagacga tgggacggtg ttgctgtcca 180 cagttacagc ccagtttcca ggggcatgcg gcctgcgcta ccggaatccc gtgtctcagt 240 gtatgagagg agtccgactg gtggaaggaa ttctgcatgc cccagatgct ggctggggca 300 atctggtata tgttgtcaac tatcccaaag ataacaaaag gaaaatggat gagacagatg 360 cttcctctgc agtgaaagtg aaaagagcag tccagaaaac atctgacctc atagtgttgg 420 gtctcccctg gaaaacaact gagcaggatc tgaaagacta tttcagtact tttggagagg 480 ttcttatggt tcaggtcaag aaagatctta aaactggtca ctcgaaaggg tttggctttg 540 ttcgatttac agaatatgaa acccaagtga aagtaatgtc acaacgacat atgatagatg 600 ggcgatggtg tgactgtaaa cttcccaact ctaagcaaag cccagacgag cctttgagaa 660 gcagaaaggt gtttgttgga cgttgtacag aggacatgac tgctgaagag cttcagcagt 720 ttttctgtca gtatggagaa gtggtagatg tcttcattcc caaaccattc agagcttttg 780 ccttcgtcac ctttgcagat gataaggttg cccagtctct ttgtggagag gatttgatca 840 ttaaaggaat cagcgtgcat atatccaatg ctgaacctaa gcataatagc aatagacagt 900 tagaaagaag tggaagattt ggtggtaatc caggtggctt tgggaatcag ggtgggtttg 960 gtaacagtag agggggtgga gctggcttgg gaaataacca gggtggtaat atgggtggag 1020 ggatgaactt tggtgctttt agcattaacc cagcgatgat ggctgcggct caggcagcgt 1080 tgcagagcag ttggggtatg atgggcatgt tagccagcca gcagaaccag tcgggcccat 1140 ctgggaataa ccaaagccag ggcagcatgc agagggaacc aaatcaggct tttggttctg 1200 gaaataattc ctacagtggt tctaattctg gtgcccccct tggttggggg tcagcatcaa 1260 atgcaggatc gggcagtggt tttaatgggg gctttggctc gagcatggat tctaagtctt 1320 ctggctgggg aatgtaggtg gtggggggtg gttagtaggt tggttattag gttaggtaga 1380 tttagaatgg tgggattcaa atttttctaa actcatggta agtatattgt aaaatacata 1440 tgtactaaaa ttttcagatt ggtttgttca gtgtggagta tattcagcag tatttttgac 1500 atttttcttt agaaaaaaag aggggaaagc taaatgaatt ttataagttt tgttatataa 1560 agggttaaaa tactgagtgg gtgaaagtga actgctgttt gcctaattgg taaaccaaca 1620 ctacaattga tctcagaagg tttctctgta atattctatc attgaaattg ttaatgaatt 1680 ctttgcatgt tcagagtaga aaccattggt tagaactaca ttcttttctc cttattttaa 1740 tttgaatccc accctatgaa ttttttcctt aggaaaatct ccatttggga gatcatgatg 1800 tcatggtgtt tgattctttt ggttttgttt ttaacacttg tcttccttca tatacgaaag 1860 tacaatatga agccttcatt taatctctgc agttcatctc atttcaaatg tttatggaag 1920 aagcacttca ttgaaagtag tgctgtaaat attctgccat aggaatactt ctgtctacat 1980 gctttctcat ccaagaattc gtcatcacgc tgcacaggct gcgtctttga cggtgggtgt 2040 tccattttta tccgctactc tttatttcat ggagtcgtat caacgctatg aacgcaaggc 2100 tgtgatatgg aaccagaagg ctgtttgaac ttttgaaacc ttgtgtggga ttgatggtgg 2160 tgccgaggca tgaaaggcta gtatgagcga gaaaaggaga gcgcgtgcag agacttggtg 2220 gtggaaaatg gatatttttt aacttggaga gatgtgtcac tcaatcctgt ggctttggtg 2280 agagagtgtg cagagagcaa tgatagcaaa taacgtacga atgttttaca tcaaaggaca 2340 tccacatcag ttggaagact ttgagttttg ttcttaggaa acccacttta gttgaatgtg 2400 ttaagtgaaa tacttgtact tccctccccc tctgtcaact gctgtgaatg ctgtatggtg 2460 tgtgttctcc tctgttactg atctggaagt gtgggaacgt gaactgaagc tgatgggctg 2520 cgaacatgga ctgagcttgt ggtgtgcttt gcaggagaac ttggaagcag agttcaccag 2580 tgagctcagg tgtctcaaag aagggtggaa gttctcatgt ctgttagcta ttcataagaa 2640 tgctgtttgc tgcagttctg tgtcctgtgc ttggatgctt ttttataaga gttgtcattg 2700 ttggaaattc ttaaataaaa ctgatttaaa taataaaaaa aaaaaaaaaa aaa 2753 //