Dbfetch
ID BC029711; SV 1; linear; mRNA; STD; MUS; 2930 BP. XX AC BC029711; XX DT 26-MAY-2002 (Rel. 71, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 9) XX DE Mus musculus glycoprotein m6a, mRNA (cDNA clone MGC:38747 IMAGE:5358632), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2930 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2930 RG NIH MGC Project RA ; RT ; RL Submitted (06-MAY-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; a59624a13ecb6003465c1f1376bc2f49. DR Ensembl-Gn; ENSMUSG00000031517; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0033615; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0033597; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0033522; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0033594; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0033303; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0034110; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0032629; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0033282; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0033435; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0033376; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0033523; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0033420; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0034128; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0032337; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0032745; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000033915; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0088875; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0088963; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0088889; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0088906; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0088464; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0089426; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0089009; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0088416; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0088608; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0088448; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0088636; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0088488; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0089717; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0088429; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0087508; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: The Cepko Laboratory CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 54 Row: i Column: 6. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2930 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /mol_type="mRNA" FT /clone_lib="NIH_MGC_94" FT /clone="MGC:38747 IMAGE:5358632" FT /tissue_type="Eye, retina, mouse strain C57Bl\6" FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2930 FT /gene="Gpm6a" FT /note="synonyms: MGC38999, M6A" FT misc_difference 2 FT /gene="Gpm6a" FT /note="'G' in cDNA is 'T' in the mouse genome." FT misc_difference 12 FT /gene="Gpm6a" FT /note="'A' in cDNA is 'T' in the mouse genome." FT CDS 75..911 FT /codon_start=1 FT /gene="Gpm6a" FT /product="glycoprotein m6a" FT /db_xref="GOA:P35802" FT /db_xref="InterPro:IPR001614" FT /db_xref="InterPro:IPR018237" FT /db_xref="MGI:MGI:107671" FT /db_xref="UniProtKB/Swiss-Prot:P35802" FT /protein_id="AAH29711.1" FT /translation="MEENMEEGQTQKGCFECCIKCLGGIPYASLIATILLYAGVALFCG FT CGHEALSGTVNILQTYFELARTAGDTLDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGF FT FTTGAIKDLYGDFKITTCGRCVSAWFIMLTYLFMLAWLGVTAFTSLPVYMYFNVWTICR FT NTTLVEGANLCLDLRQFGIVTIGEEKKICTASENFLRMCESTELNMTFHLFIVALAGAG FT AAVIAMVHYLMVLSANWAYVKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT" FT misc_difference 2702 FT /gene="Gpm6a" FT /note="'C' in cDNA is 'G' in the mouse genome." FT misc_difference 2855..2930 FT /gene="Gpm6a" FT /note="polyA tail: 76 bases do not align to the mouse FT genome." XX SQ Sequence 2930 BP; 863 A; 504 C; 576 G; 987 T; 0 other; agtagttcat cattgacatc taattgagct tttgactaat accgtgcgcc agattctcct 60 gaagaaaggt agccatggaa gagaatatgg aagaaggaca gacacagaaa gggtgcttcg 120 agtgctgcat taaatgcctg ggaggtattc cctatgcttc tctgattgca accatcctgc 180 tgtatgcagg cgttgccctg ttctgtggct gtggccatga agccctttct ggaacagtca 240 acattctgca gacctacttt gagttggcaa ggactgctgg agacacactg gatgttttca 300 ctatgattga catctttaag tatgtgatct atggcattgc ggctgctttc tttgtctatg 360 gcattttact gatggtagaa ggtttcttca caactggggc tatcaaagat ctctatggag 420 acttcaaaat caccacctgt ggcagatgtg tgagcgcttg gtttatcatg ctgacatacc 480 tcttcatgtt ggcctggctg ggagtcacag ctttcacctc actgcccgtg tacatgtatt 540 tcaatgtgtg gaccatctgc cggaacacca ctctagtgga gggagcaaat ctctgcttgg 600 atctgcgtca gtttgggatt gtgacaattg gagaggaaaa gaaaatttgt actgcctctg 660 agaacttcct gaggatgtgt gaatctactg agctgaatat gaccttccac ttgttcattg 720 tggcacttgc tggagctgga gcagcagtta ttgctatggt ccactacctg atggttctgt 780 ctgccaactg ggcctatgtg aaagatgcct gccgcatgca gaagtacgaa gacatcaagt 840 caaaggaaga gcaggagctg cacgacatcc attctactcg ctccaaagag cggctcaatg 900 cgtacacata aatacgcttc tctgttcctt accactcgaa ggcattggtg tttcattaag 960 ggccatccaa ccatccaacc tgtgaagagc aaaacgagaa tgctactcat caaagatgcg 1020 cagggtgact aatgaatcac ctgagtataa ctctttgctg ttgagcattc catcttctaa 1080 tttgttaaat tggaatgacc aaatctcctc tacaagctcc tattcagtct ttttttttaa 1140 cctctcaaat tgatttagtt cttctgtatg atcaaagata ttaacattgt ccaacgcaaa 1200 tctttgtttg atttttaatc acctcccaca tatcacacat aacacttttt gcattgtttc 1260 ttatgttttg gaagagaaaa tagctttttt tatacttttt agttttgatt tcagtaacta 1320 gtttaactac aggtaacctt caaagggacc gttgtacatt atgaaagaga gacagagatg 1380 gtatcatgat gactccgctt gatatgggaa tcagtctgga gagatcagtg gccacacggc 1440 tatcggccat ggttaatgtt ttcatccatc taaggtgcaa tttcaaaatt tctaagggta 1500 ggttaaaaaa aagtgcttct tatctttgtt aacattgtat tcttttttct tgatgttcgt 1560 aaaaggtatt tctctgatta ctcatgttta tgttgtgagc atgtagaaac agtaatgcta 1620 atgcatggcc agttgccttc ctaagattgt gacaccaggc ttaccttttc aagtttagta 1680 tagaaacaat tatcatggaa ataactactg tggactgttg gagagtgatc tttttttgtg 1740 atttatgcag tggctggatt ggatctttta atatgctaat gtggaaaatt aattaccttt 1800 atgaaggtgg tatcttaaac ataagcacac taaaccctca agacttgttt tacccactta 1860 aaacttttaa cggattgcac ctctgtaagc tatttcttaa aatgtgtatg atatatttga 1920 aaagacttcc attaatataa tagctttgct tgcagccttc caatctatgt tggtttacct 1980 gtagtgtttc taaagggtgg tcagaggcca ctagagaatg tattgtttgg gagtgtagtg 2040 atatatattt tgtgttttta tttcaagtaa gtcattttaa ccaaatgttc attcacattc 2100 atttataaga agtacctata tcagacaaat tttaaaagaa aaacaatcag tattaatgga 2160 ccaaatttcg tgtttgtttt aaccttgact ctcttttgat tctttctaat gctacaagaa 2220 tgctgtgaaa tgtcatttaa aataatgatg tagcctgaca agaaattttg tcagtgtata 2280 aacctaggta gtattgtgca ctgatttgac cattgtgaat tcctccttca gtgtaagtgc 2340 attcccaata aaatttattg agtgaaacaa tctttgtaca actactagtc atgcatcatc 2400 agtaatttta caagttcttg tagtaggtag ggggtattac tagcgtttct gtggcatgat 2460 tatgcattct gtaatattaa tttgggggtc cttttgcttt ttaacactta gattatctta 2520 atggttcaac atttttctga tatatgcagt attaaagata ttgagcaaaa gtattaatgg 2580 gcttctttaa attctatatt atagtgtttc agttctgtgt ctacagtgtg tgatgatttt 2640 taaaactgtc ttttaaattt atgtaatgat gttgacattt tgacttttat ttctggtttt 2700 acagtttgta ttttcatgga gtgctttgta gcaggcatta caagtaatct gttttgtaca 2760 taaatgtgcc aacagcttga tggtggcgtt tttgaaatgt agaacaaagt gcttgcaaaa 2820 tgtaataaat acacttgtgt actttgtgta cttaaaaaaa aaaaaaaaaa aaaaaaaaaa 2880 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2930 //