Dbfetch
ID BC029252; SV 1; linear; mRNA; STD; MUS; 1020 BP. XX AC BC029252; XX DT 25-MAY-2002 (Rel. 71, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 11) XX DE Mus musculus ribonuclease H2, large subunit, mRNA (cDNA clone MGC:36700 DE IMAGE:3666709), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1020 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1020 RG NIH MGC Project RA ; RT ; RL Submitted (01-MAY-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 44f6b432b80f159f22b1623fcee934f4. DR Ensembl-Gn; ENSMUSG00000052926; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0033882; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0033865; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0033791; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0033858; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0033568; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0034378; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0032898; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0033544; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0033697; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0033645; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0033789; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0033687; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0034395; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0032602; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0033011; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000065049; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0089767; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0089849; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0089788; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0089784; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0089353; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0090306; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0089902; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0089288; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0089491; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0089337; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0089527; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0089358; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0090609; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0089327; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0088399; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 61 Row: d Column: 12 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1020 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="mix FVB/N, C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam5" FT /clone="MGC:36700 IMAGE:3666709" FT /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months FT old, gross tissue." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1020 FT /gene="Rnaseh2a" FT /note="synonyms: RNHL, RNHIA, RNASEHI" FT CDS 56..820 FT /codon_start=1 FT /gene="Rnaseh2a" FT /product="Rnaseh2a protein" FT /db_xref="GOA:Q05C51" FT /db_xref="InterPro:IPR001352" FT /db_xref="InterPro:IPR004649" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR023160" FT /db_xref="InterPro:IPR024567" FT /db_xref="InterPro:IPR036397" FT /db_xref="MGI:MGI:1916974" FT /db_xref="UniProtKB/TrEMBL:Q05C51" FT /protein_id="AAH29252.1" FT /translation="MDLSELERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPM FT VYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLIST FT SMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEV FT TVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLR FT KHVDPVFGFPQFVRFSWSTAQAILEKEAEDVI" FT misc_difference 241 FT /gene="Rnaseh2a" FT /note="'T' in cDNA is 'C' in the mouse genome." FT misc_difference 421 FT /gene="Rnaseh2a" FT /note="'A' in cDNA is 'T' in the mouse genome." FT misc_difference 748 FT /gene="Rnaseh2a" FT /note="'C' in cDNA is 'T' in the mouse genome." FT misc_difference 959 FT /gene="Rnaseh2a" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 1007..1020 FT /gene="Rnaseh2a" FT /note="polyA tail: 14 bases do not align to the mouse FT genome." XX SQ Sequence 1020 BP; 246 A; 264 C; 290 G; 220 T; 0 other; gggacctgcg cttgcagtgt tgttttctac aattgttggc tgtcgcagag gcagcatgga 60 tctcagcgag ctggagaggg acaatacggg tcgttgtcgt ctgagttctc ctgtacctgc 120 tgtgtgtctc aaggagccgt gcgttctggg cgtggatgaa gcgggccgag gccctgtgct 180 tggtcccatg gtctacgcca tctgttactg ccccctgtct cgcttggcag atctggaggc 240 tctgaaagtg gcagactcta agaccttgac agagaacgag cgggagaggc tctttgcgaa 300 aatggaggag gatggagact ttgtgggttg ggctttggac gtcctgtctc caaacctgat 360 ctctaccagc atgcttgggc gagtcaagta caacctcaac tccctgtcac acgatacagc 420 agcggggctg atacagtacg cactggacca gaatgtgaat gtcactcagg tatttgtgga 480 cactgtagga atgccagaga cataccaggc tcgattacaa cagcactttc ccgggataga 540 ggtgacagtc aaggccaaag ctgactccct gttccctgtg gtcagtgctg ccagcatctt 600 tgccaaggtg gcccgagaca aggctgtgaa gaactggcag tttgtggaaa atttacagga 660 tctggactcc gattatggct caggctatcc caatgatccc aagaccaaag cctggctgag 720 gaaacatgtg gaccctgtgt ttggcttccc ccagtttgta cggttcagtt ggagcacagc 780 ccaggccatc ctggagaagg aggcagaaga tgtcatttga agctgaggag gatcctgaaa 840 gaccgggaaa aatcacctcc tacttcagcc agggcccgca gacctgccgc cctcaggccc 900 cccacagata cttccaggag cgaggcctgg aggcagccag cagcctctag gagcccacat 960 gtgcaccacc tgcccttcta acccaggaat aaaagctgtt caagaaaaaa aaaaaaaaaa 1020 //