ID BC028979; SV 1; linear; mRNA; STD; MUS; 2228 BP.
XX
AC BC028979;
XX
DT 12-AUG-2002 (Rel. 72, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 10)
XX
DE Mus musculus caspase 12, mRNA (cDNA clone MGC:36090 IMAGE:5375109),
DE complete cds.
XX
KW MGC.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2228
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-2228
RG NIH MGC Project
RA ;
RT ;
RL Submitted (01-MAY-2002) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
XX
DR MD5; bf039bd01e46646d832eedd5412524dd.
DR Ensembl-Gn; ENSMUSG00000025887; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0034314; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0034291; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0034221; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0034285; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0033997; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0034807; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0033324; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0033969; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0034126; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0034071; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0034213; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0034115; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0034826; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0033028; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0033440; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000027009; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0091084; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0091158; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0091102; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0091088; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0090660; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0091610; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0091228; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0090589; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0090804; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0090636; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0090824; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0090659; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0091924; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0090667; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0089693; mus_musculus_wsbeij.
XX
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Gilbert Smith, Ph.D.
CC cDNA Library Preparation: Life Technologies, Inc.
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Baylor College of Medicine Human Genome
CC Sequencing Center
CC Center code: BCM-HGSC
CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC Contact: amg@bcm.tmc.edu
CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC A.N., Gibbs, R.A.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 53 Row: p Column: 15
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 31981867.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
XX
FH Key Location/Qualifiers
FH
FT source 1..2228
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="FVB/N-3"
FT /mol_type="mRNA"
FT /clone_lib="NCI_CGAP_Mam2"
FT /clone="MGC:36090 IMAGE:5375109"
FT /tissue_type="Mammary tumor. MMTV-LTR/INT3 model. 5 month
FT old mouse. Taken by biopsy."
FT /note="Vector: pCMV-SPORT6"
FT /db_xref="taxon:10090"
FT gene 1..2228
FT /gene="Casp12"
FT CDS 31..1290
FT /codon_start=1
FT /gene="Casp12"
FT /product="caspase 12"
FT /db_xref="GOA:O08736"
FT /db_xref="InterPro:IPR001309"
FT /db_xref="InterPro:IPR001315"
FT /db_xref="InterPro:IPR002138"
FT /db_xref="InterPro:IPR011029"
FT /db_xref="InterPro:IPR015917"
FT /db_xref="InterPro:IPR016129"
FT /db_xref="InterPro:IPR029030"
FT /db_xref="InterPro:IPR033139"
FT /db_xref="InterPro:IPR035713"
FT /db_xref="MGI:MGI:1312922"
FT /db_xref="UniProtKB/Swiss-Prot:O08736"
FT /protein_id="AAH28979.1"
FT /translation="MAARRTHERDPIYKIKGLAKDMLDGVFDDLVEKNVLNGDELLKIG
FT ESASFILNKAENLVENFLEKTDMAGKIFAGHIANSQEQLSLQFSNDEDDGPQKICTPSS
FT PSESKRKVEDDEMEVNAGLAHESHLMLTAPHGLQSSEVQDTLKLCPRDQFCKIKTERAK
FT EIYPVMEKEGRTRLALIICNKKFDYLFDRDNADTDILNMQELLENLGYSVVLKENLTAQ
FT EMETELMQFAGRPEHQSSDSTFLVFMSHGILEGICGVKHRNKKPDVLHDDTIFKIFNNS
FT NCRSLRNKPKILIMQACRGRYNGTIWVSTNKGIATADTDEERVLSCKWNNSITKAHVET
FT DFIAFKSSTPHNISWKVGKTGSLFISKLIDCFKKYCWCYHLEEIFRKVQHSFEVPGELT
FT QMPTIERVSMTRYFYLFPGN"
FT misc_difference 2205..2228
FT /gene="Casp12"
FT /note="polyA tail: 24 bases do not align to the mouse
FT genome."
XX
SQ Sequence 2228 BP; 754 A; 392 C; 426 G; 656 T; 0 other;
gctttttatg tccaggagtc ctgcacagcc atggcggcca ggaggacaca tgaaagagat 60
ccaatctaca agatcaaagg tttggccaag gacatgctgg atggggtttt tgatgacctg 120
gtggagaaga atgttttaaa tggagatgag ttactcaaaa taggggaaag tgcgagtttc 180
atcctgaaca aggctgagaa tctggttgag aacttcttag agaaaacaga catggcagga 240
aaaatatttg ctggccacat tgccaattcc caggaacagc tgagtttaca attttctaat 300
gatgaggatg atggacctca gaagatatgt acaccttctt ctccatcaga atccaagaga 360
aaagtagagg atgatgaaat ggaggtaaat gctggattgg cccatgaatc acatctaatg 420
ctgacagctc ctcatggact ccagagctca gaagtccaag atacactgaa gctttgtcca 480
cgtgatcagt tttgtaagat aaagacagaa agggcaaaag agatatatcc agtgatggag 540
aaggagggac gaacacgtct ggctctcatc atctgcaaca aaaagtttga ctaccttttt 600
gatagagata atgctgatac tgacattttg aacatgcaag aactacttga aaatcttgga 660
tactctgtgg tgttaaagga aaaccttaca gctcaggaaa tggagacaga gttaatgcag 720
tttgctggcc gtccagagca ccagtcctca gacagcacat tcctggtgtt tatgtcccat 780
ggcatcctgg aaggaatctg tggggtgaag caccgaaaca aaaagccaga tgttcttcat 840
gatgacacta tcttcaaaat tttcaacaac tctaactgtc ggagtctgag aaacaaaccc 900
aagattctca tcatgcaggc ctgcagaggc agatataatg gaactatttg ggtatccaca 960
aacaaaggga tagccactgc tgatacagat gaggaacgtg tgttgagctg taaatggaat 1020
aatagtataa caaaggccca tgtggagaca gatttcattg ctttcaaatc ttctacccca 1080
cataatattt cttggaaggt aggcaagact ggttccctct tcatttccaa actcattgac 1140
tgcttcaaaa agtactgttg gtgttatcat ttggaggaaa tttttcgaaa ggttcaacac 1200
tcatttgagg tcccaggtga actgacccag atgcccacta ttgagagagt atccatgaca 1260
cgctatttct acctttttcc cgggaattag cacaggcaac tctcatgcag ttcccagtca 1320
agtattgctg tagctgagaa gaaaagaaaa ttccaagatc ccaggatttt taaatgtgta 1380
aaacttttca gttagatatt ttatacaata tcataaggct agataatttc cataggttat 1440
ttttagggga aacctgatac gtaaaatttt gcatgaaaag tatagattcg ttccttcctt 1500
ccaaatctgc tcatctttta ctttatttta ttaaatttat atttgcacat ttttgtaaaa 1560
tgaataaagg aaaaagacac taaagaacat gtctgaacat atcctggaac ttcttctttg 1620
taaaatgaat aaaggaaaaa gacactaaag aacaaagatg atacaccttt tgatgaacca 1680
ctttcaccta taaattagta gtaagaattt actcacaagg aagatcttat ctacaatgta 1740
gctgagaaat gaaactgttg catatgtagg taaaactaat catcttttag gaataagata 1800
aagaggttta tgtccactgt ttgtctctgg catacatggt tttcatgcct agtggctacc 1860
taccattcct ttcaatcaat ttcttaggat ataattgaca aatttatgct atgtttataa 1920
tttttctctt aaatgctttt gtaataagat atactcacac atacacattt aagattctgt 1980
ctattagtgt tattgaaata aatcctagaa acaaaaatta aaagtttaaa gcattaaaga 2040
caattttgag acaaaatatt ctatgaaatt ctatgcaaaa ttgaattctt ctacaagtat 2100
gtgatgaagc ccacctacca ctatttttgt catcttgagg atgttatatc attattttta 2160
cttaactgag ctcaaattaa aatctttgtt tattctttgt tctaaaaaaa aaaaaaaaaa 2220
aaaaaaaa 2228
//
