ID BC024621; SV 2; linear; mRNA; STD; MUS; 899 BP.
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AC BC024621;
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DT 14-MAR-2002 (Rel. 71, Created)
DT 14-JUL-2017 (Rel. 133, Last updated, Version 16)
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DE Mus musculus gamma-aminobutyric acid receptor associated protein, mRNA
DE (cDNA clone MGC:25654 IMAGE:4459651), complete cds.
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KW MGC.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-899
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-899
RG NIH MGC Project
RA ;
RT ;
RL Submitted (01-MAR-2002) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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RN [3]
RC Sequence update by database staff to remove vector contamination
RP 1-899
RG NIH MGC Project
RA ;
RT ;
RL Submitted (10-JUL-2017) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR MD5; 03d0873c4055b707d0e8d1573eb2f6d3.
DR Ensembl-Gn; ENSMUSG00000018567; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0018575; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0018543; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0018512; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0018515; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0018328; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0018966; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0017883; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0018300; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0018410; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0018400; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0018480; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0018423; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0019008; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0017657; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0017937; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000018711; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0030169; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0030108; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0030082; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0030101; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0029897; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0030603; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0029597; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0029814; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0029952; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0029943; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0030067; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0029927; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0030631; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0029314; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0029389; mus_musculus_wsbeij.
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CC On Jul 10, 2017 this sequence version replaced BC024621.1.
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Gilbert Smith, Ph.D.
CC cDNA Library Preparation: Life Technologies, Inc.
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Baylor College of Medicine Human Genome
CC Sequencing Center
CC Center code: BCM-HGSC
CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC Contact: amg@bcm.tmc.edu
CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC A.N., Gibbs, R.A.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 31 Row: h Column: 15
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 40254379.
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FH Key Location/Qualifiers
FH
FT source 1..899
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="FVB/N"
FT /mol_type="mRNA"
FT /clone_lib="NCI_CGAP_Mam1"
FT /clone="MGC:25654 IMAGE:4459651"
FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha
FT model. 10 month old virgin mouse. Taken by biopsy."
FT /note="Vector: pCMV-SPORT6"
FT /db_xref="taxon:10090"
FT gene 1..899
FT /gene="Gabarap"
FT CDS 102..455
FT /codon_start=1
FT /gene="Gabarap"
FT /product="gamma-aminobutyric acid receptor associated
FT protein"
FT /db_xref="GOA:Q9DCD6"
FT /db_xref="InterPro:IPR004241"
FT /db_xref="InterPro:IPR029071"
FT /db_xref="MGI:MGI:1861742"
FT /db_xref="UniProtKB/Swiss-Prot:Q9DCD6"
FT /protein_id="AAH24621.1"
FT /translation="MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLD
FT KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFF
FT LYIAYSDESVYGL"
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SQ Sequence 899 BP; 217 A; 246 C; 205 G; 231 T; 0 other;
gccaagtctg ttcgtcgaag ccgcctccgc cgccgccccc tgtcccggcc ccccccctgg 60
gttccctcag cccagctcgg tccagcccgg ttctcgggag aatgaagttc gtgtacaaag 120
aggagcatcc gttcgagaaa cgccgctctg agggcgagaa aatccgaaag aaatacccag 180
accgggtccc ggtgatagtg gaaaaagccc ccaaagctcg gataggagac ctggacaaaa 240
agaaatacct ggtgccttct gatcttacag ttggtcaatt ctacttcttg atccggaagc 300
gaattcatct ccgtgctgaa gatgccttgt ttttctttgt caacaatgtc attccaccca 360
ccagtgccac gatgggtcag ctgtaccagg aacaccatga agaagacttc tttctataca 420
ttgcctacag tgatgaaagc gtctatggtc tgtgaagctg ctgtacctga ggtggggggt 480
tccattctac gaagagaggt ggcgctcctt ccttgacatc cagttcctcc ttcaggctca 540
aacaccacct cctttcttca ggacctgcac ttaatgtttg aggctgtctc tccagtccct 600
ctcagcagga ggggtaatgg tagatacagc ctccatacat ctctttctcc ccttgtttac 660
cctccattcc cactctgatt tagacttctt gattgtcgat ctctgtcaca tccgatgatt 720
gttttggttt ctattccctt tctaactgcc catcgggctc agaaccccaa taatcccttc 780
ctttcactat cttctttttg gggggtaggt ggaagggatt gacattggat gggggaggta 840
ggaggcacat caataaaaag gaaaccaccg agctgaattg aaaaaaaaaa aaaaaaaaa 899
//
