Dbfetch
ID BC024575; SV 1; linear; mRNA; STD; MUS; 1359 BP. XX AC BC024575; XX DT 14-MAR-2002 (Rel. 71, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus aminolevulinic acid synthase 2, erythroid, mRNA (cDNA clone DE IMAGE:5054102), complete cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1359 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1359 RG NIH MGC Project RA ; RT ; RL Submitted (01-MAR-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; e50bbed977e4bcae4d09683fa9adda3a. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome CC Center, Stanford University School of Medicine, Stanford, CA 94305 CC Web site: http://www-shgc.stanford.edu CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, CC R. M. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 58 Row: m Column: 22 CC This clone has the following problem: The cds is short compared to CC the longest cds in the locus. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1359 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="IMAGE:5054102" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1359 FT /gene="Alas2" FT /note="synonyms: ALAS, ALAS-E" FT CDS 8..1216 FT /codon_start=1 FT /gene="Alas2" FT /product="Alas2 protein" FT /db_xref="GOA:Q8R1G3" FT /db_xref="InterPro:IPR001917" FT /db_xref="InterPro:IPR004839" FT /db_xref="InterPro:IPR010961" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="MGI:MGI:87990" FT /db_xref="UniProtKB/TrEMBL:Q8R1G3" FT /protein_id="AAH24575.1" FT /translation="MASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNIS FT GTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMI FT QGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAH FT QYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLV FT DMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGF FT PVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPRGEELLRLAPSPHHS FT PQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHRPVHFELMSEWERSYFGNMGPQYVT FT TYA" FT misc_difference 1344..1359 FT /gene="Alas2" FT /note="polyA tail: 16 bases do not align to the mouse FT genome." XX SQ Sequence 1359 BP; 309 A; 362 C; 351 G; 337 T; 0 other; ggcatctatg gcatcaaagg atgtttctgt ttggtgtagt aatgactatt tgggcataag 60 cagacaccct cgtgtcttgc aggccataga ggagaccctg aagaatcatg gagctggagc 120 tgggggcact cgcaatatct caggtaccag caagtttcat gtggagcttg aacaggagct 180 ggctgaacta caccagaaag actcagctct gctcttctcc tcctgttttg tggccaatga 240 ttctactctc tttacactgg ccaagcttct gccagggtgt gagatctact cagatgcagg 300 caatcatgcc tccatgatcc aaggcattcg caacagtggt gcagccaagt ttgtcttcag 360 acacaatgac ccaggccacc tgaagaaact tctcgagaag tctgatccca agacaccaaa 420 aattgtggct tttgagactg ttcattccat ggatggtgcc atctgtcctc tggaggaatt 480 gtgtgatgtg gcccaccagt atggagccct gaccttcgta gatgaagtcc atgctgtagg 540 actgtatgga gcccggggtg caggtatcgg ggagcgtgat ggaattatgc acaagcttga 600 catcatctct ggaactcttg gcaaggcctt tggttgcgtc ggtggctata tagccagcac 660 tcgggacttg gtggacatgg tgcgctccta cgctgcaggc ttcatcttta ccacttcact 720 gcctcccatg gtgctctctg gggctctaga atctgtgcgc ctactcaagg gagaggaggg 780 tcaagccctg aggcgggcac accagcgcaa tgtcaaacac atgcgccagc tgctaatgga 840 caggggcttt cctgttatcc cctgtcccag ccacatcatc cccatcaggg tgggtaatgc 900 agcactcaac agcaagatct gtgatcttct gctctccaag cacagcatct atgtgcaggc 960 catcaactac ccaactgtgc ctcgtggtga ggagctactg cgcttggccc cctcccccca 1020 ccacagccct cagatgatgg aaaactttgt ggagaagctg ctgctggcct ggactgaggt 1080 ggggctgccc ctccaagatg tgtctgtggc tgcatgcaac ttctgtcatc gtcctgtgca 1140 ctttgaactt atgagcgagt gggagcgatc ctactttggg aacatgggac cccaatatgt 1200 taccacctat gcttaaggag ccagctgcct tggatgccag ctccacctgc actccccctg 1260 gggctgggct tcctcctgct ctctgctttc ctgtgtgctt ctggctgact tgattctgaa 1320 aataaagagc aacttgaaac attaaaaaaa aaaaaaaaa 1359 //