Dbfetch
ID BC023794; SV 1; linear; mRNA; STD; MUS; 3612 BP. XX AC BC023794; XX DT 24-SEP-2002 (Rel. 73, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 7) XX DE Mus musculus ATPase, Na+/K+ transporting, alpha 1 polypeptide, mRNA (cDNA DE clone MGC:38476 IMAGE:5351943), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3612 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-3612 RA Strausberg R.; RT ; RL Submitted (05-FEB-2002) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Cancer RL Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, RL Bethesda, MD 20892-2590, USA XX DR MD5; dd6e85562f526710a550d0ed9aecba0b. DR Ensembl-Gn; ENSMUSG00000033161; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0027676; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0027635; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0027601; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0027648; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0027377; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0028091; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0026833; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0027352; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0027495; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0027463; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0027602; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0027493; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0028146; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0026560; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0026913; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000036493; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0062775; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0062803; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0062734; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0062726; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0062410; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0063220; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0062718; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0062375; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0062489; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0062457; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0062624; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0062456; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0063420; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0062255; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0061682; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 55 Row: j Column: 17 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 21450276. XX FH Key Location/Qualifiers FH FT source 1..3612 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:38476 IMAGE:5351943" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..3612 FT /gene="Atp1a1" FT /note="synonym: MGC38419" FT CDS 189..3260 FT /codon_start=1 FT /product="Atp1a1 protein" FT /db_xref="GOA:Q8VDN2" FT /db_xref="InterPro:IPR001757" FT /db_xref="InterPro:IPR004014" FT /db_xref="InterPro:IPR005775" FT /db_xref="InterPro:IPR006068" FT /db_xref="InterPro:IPR008250" FT /db_xref="InterPro:IPR018303" FT /db_xref="InterPro:IPR023214" FT /db_xref="InterPro:IPR023298" FT /db_xref="InterPro:IPR023299" FT /db_xref="InterPro:IPR036412" FT /db_xref="MGI:MGI:88105" FT /db_xref="UniProtKB/Swiss-Prot:Q8VDN2" FT /protein_id="AAH23794.1" FT /translation="MGKGVGRDKYEPAAVSEHGDKKGKKAKKERDMDELKKEVSMDDHK FT LSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLL FT WIGAILCFLAYGIRSATEEEPPNDDLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKN FT MVPQQALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGES FT EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQ FT TPIAEEIEHFIHLITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATV FT TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHE FT ADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLK FT CIEVCCGSVMEMREKYSKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDR FT CSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDDV FT NFPVDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS FT EGNETVEDIAARLNIPVNQVNPRDAKACVVHGSDLKDMTSEELDDILRYHTEIVFARTS FT PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIVGSDVSKQAADMILLDD FT NFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL FT GTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFV FT ILAENGFLPFHLLGIRETWDDRWVNDVEDSYGQQWTYEQRKIVEFTCHTAFFVSIVVVQ FT WADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGAALRMYPLKPTWWF FT CAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY" FT misc_feature 294..3224 FT /note="MgtA; Region: Cation transport ATPase [Inorganic ion FT transport and metabolism]" XX SQ Sequence 3612 BP; 860 A; 951 C; 991 G; 810 T; 0 other; ccacgcgtcc gggctcgagc tgcggctggg tctggggcgc ggagcctcgg cgggaggagg 60 cggacacgtg gcagccctag ttcccgcctc tcggctcccc cggctccgct ctcccggccg 120 ggagctgctc tcttctcttt ctagtctcca gcaacaggac ccggcgcggg gcccgcagcg 180 ccgccaccat ggggaagggg gttggacgag acaagtatga gcctgccgct gtatcggagc 240 atggtgacaa aaagggcaaa aaggccaaga aggaaaggga tatggatgag ctcaagaagg 300 aagtgtctat ggacgaccat aaactcagcc tggatgaact ccatcgtaaa tacggaacag 360 atttgagccg aggattaaca cctgcaaggg ccgctgagat cctggcccgg gatggcccca 420 acgccctcac accccctccc actactcccg aatgggtgaa attctgccgg cagctctttg 480 gaggcttttc catgttactg tggatcgggg ccattctttg tttcctggct tatggcatcc 540 gaagtgctac agaagaggaa ccgccaaacg atgatctgta cctcggggtg gtgctctctg 600 ctgtagtcat cataactggc tgtttctcct attatcaaga agcaaaaagc tccaagatca 660 tggaatcctt caagaacatg gtccctcagc aagcccttgt gattcgaaat ggagagaaaa 720 tgagcatcaa tgcggaggat gtcgtcgtcg gggatctggt ggaggtgaaa gggggagacc 780 ggatccctgc tgatcttaga atcatatctg caaacggctg caaggtggat aactcctcac 840 tcactggtga atcagaaccc cagactcggt ccccggattt cacaaacgag aaccccttgg 900 agacaaggaa cattgccttc ttctcaacca actgtgtgga aggaaccgca cgtggcatcg 960 tcgtgtacac tggggaccgc accgtgatgg gcaggattgc cacgcttgcc tctgggctag 1020 aaggtggcca gacccccatt gctgaagaga ttgagcattt catccacctc atcaccgggg 1080 tggccgtgtt cctgggggtg tctttcttca tcctttctct gatccttgag tacacctggc 1140 tcgaggctgt catcttcctc attggtatca tcgtagccaa cgtgccagaa ggtctgctgg 1200 ccactgtcac ggtctgtctg acactcactg ccaagcgcat ggcgaggaag aactgcctgg 1260 tgaagaactt ggaagctgtg gagaccttgg ggtccacatc taccatctgc tcagacaaga 1320 cgggaactct gactcagaac cggatgacag tggcccacat gtggtttgac aatcagatcc 1380 atgaagctga caccacggag aatcagagtg gtgtctcctt tgacaagacg tcagccacct 1440 ggttcgctct gtccagaatt gctggtctct gtaacagggc agtgtttcag gctaaccaag 1500 aaaacctgcc tattcttaag cgggcagtag cgggagatgc ctctgagtcg gcgctcttaa 1560 agtgcattga agtctgctgc ggctccgtga tggagatgag ggagaaatac agcaagatag 1620 tggagattcc cttcaactcc accaacaagt accagttgtc cattcacaag aacccaaatg 1680 catctgagcc caaacacctg ctagtgatga agggcgcccc agaaaggatc ctggaccgct 1740 gcagctccat ccttctccac ggcaaggagc agccactgga tgaagagctg aaggacgctt 1800 ttcagaacgc ctacctagag ctggggggcc ttggagaacg tgtgctaggt ttctgccacc 1860 tcctcctgcc tgacgaacag tttcccgaag gcttccagtt tgacactgac gatgtcaatt 1920 tccccgtgga taacctctgc ttcgtgggtc ttatctccat gattgaccct ccccgagctg 1980 ctgtccccga tgctgtgggc aaatgccgca gcgctgggat taaggtcatc atggttacag 2040 gagaccatcc aatcacagcg aaagccattg ccaagggggt aggcattatc tcagaaggca 2100 atgagactgt ggaagacatt gctgcccgcc tcaacattcc agtgaaccag gtgaacccca 2160 gagatgccaa ggcctgtgtg gtccacggca gtgacctgaa ggacatgacc tccgaggagc 2220 tggatgacat cttgcggtac cacacagaga tcgtctttgc caggacctct cctcagcaga 2280 agctcatcat tgtggagggc tgccagcggc agggcgccat cgtggccgtc acaggggatg 2340 gtgtcaatga ctctccagct ttgaaaaagg cagatattgg ggttgccatg gggattgttg 2400 gctctgatgt gtccaagcaa gctgctgaca tgatccttct ggatgacaac tttgcctcca 2460 ttgtgactgg agtagaggaa ggtcgtctga tttttgataa cttgaagaaa tccatcgctt 2520 acaccctaac cagtaacatt ccggaaatca cccccttctt gatatttatt attgcaaaca 2580 ttccactgcc cctggggact gtgaccatcc tctgcattga cttgggcact gacatggttc 2640 ctgccatctc cctggcctac gagcaagctg agagcgacat catgaagagg cagcccagaa 2700 accccaaaac ggacaaactt gtgaacgagc gtctgatcag catggcctat ggacagatcg 2760 gtatgatcca ggccctggga ggcttcttca cttactttgt gattctggct gagaacggtt 2820 tcctgccctt tcacctgttg ggcatccgag agacctggga tgaccgctgg gtcaacgatg 2880 tggaggacag ctacgggcag cagtggacct acgagcagag gaagatcgtg gagttcacct 2940 gccatacagc gttctttgtc agtattgtgg tagtgcagtg ggccgacttg gtcatctgca 3000 agaccagaag gaattctgtc ttccagcagg gaatgaagaa caagatcttg atatttggcc 3060 tctttgaaga gacagccctt gctgctttct tatcctactg ccccgggatg ggggcagccc 3120 ttaggatgta tcccctcaaa cctacatggt ggttctgtgc cttcccctac tcccttctca 3180 tctttgtgta tgacgaggtg cggaagctca ttatcaggcg gcgccctggc ggctgggtgg 3240 agaaggaaac ctactactag cccactgccc tgcacgccgt ggaacattgt gccacacact 3300 gcacccaccc ctaccccctc tttgtgtact tcaagtcttg gagctcggaa ctctaccctg 3360 gtaggaaagc accaaagcat gtggggatgc agacgtcctg gaatgaagca tgtagctgta 3420 acggggggcg gggcgggggg gagggctgcc tgagaaacac cgtgtacggg gacgacagcg 3480 ggcaaggttt atacgtgcct ttttgttttt gtaaaaaagg aaaacctgga aagactgaaa 3540 gattacgttt tatatctgga tttttacaaa taaagatggc tattataacg gaaaaaaaaa 3600 aaaaaaaaaa aa 3612 //