ID BC023060; SV 1; linear; mRNA; STD; MUS; 1004 BP.
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AC BC023060;
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DT 08-FEB-2002 (Rel. 70, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 6)
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DE Mus musculus epidermal growth factor-containing fibulin-like extracellular
DE matrix protein 1, mRNA (cDNA clone IMAGE:5357328), partial cds.
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KW .
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-1004
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-1004
RA Strausberg R.;
RT ;
RL Submitted (04-FEB-2002) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Cancer
RL Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03,
RL Bethesda, MD 20892-2590, USA
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DR MD5; c9b8c3dd2053fa4cea18016937f5d842.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: The Cepko Laboratory
CC cDNA Library Preparation: Life Technologies, Inc.
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Baylor College of Medicine Human Genome
CC Sequencing Center
CC Center code: BCM-HGSC
CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC Contact: amg@bcm.tmc.edu
CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC A.N., Gibbs, R.A.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 54 Row: f Column: 17
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: Hexamer frequency ORF
CC analysis.
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FH Key Location/Qualifiers
FH
FT source 1..1004
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_94"
FT /clone="IMAGE:5357328"
FT /tissue_type="Eye, retina, mouse strain C57Bl\6"
FT /note="Vector: pCMV-SPORT6"
FT /db_xref="taxon:10090"
FT CDS <1..567
FT /codon_start=1
FT /gene="Efemp1"
FT /product="Efemp1 protein"
FT /db_xref="GOA:Q8R1U8"
FT /db_xref="InterPro:IPR001881"
FT /db_xref="InterPro:IPR013032"
FT /db_xref="InterPro:IPR018097"
FT /db_xref="MGI:MGI:1339998"
FT /db_xref="UniProtKB/TrEMBL:Q8R1U8"
FT /protein_id="AAH23060.1"
FT /translation="QYQCVNEPGKFSCMCPQGYEVVRSRTCQDINECETTNECREDEMC
FT WNYHGGFRCYPRNPCQDHYVLTSENRCVCPVSNTMCRELPQSIVYKYMSIRSDRSVPSD
FT IFQIQATMIYANTINTFRIKSGNENGEFYLRQTSPVSAMLVLVKSLSGPREYIVDLEML
FT TVSSIGTFRTSSVLRLTIIVGPFSF"
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SQ Sequence 1004 BP; 335 A; 194 C; 198 G; 277 T; 0 other;
caatatcaat gtgtcaatga acctgggaag ttctcatgta tgtgcccaca gggttacgaa 60
gtggtgcgca gcagaacctg tcaggatata aatgaatgtg agaccaccaa tgaatgccga 120
gaagatgaga tgtgctggaa ttaccatggg ggcttccgct gttacccacg aaacccatgt 180
caagatcact atgttctaac atcagaaaac cgatgtgttt gcccagtctc aaacactatg 240
tgccgggagc tgccccagtc cattgtctac aaatacatga gcatccgatc tgacaggtcc 300
gtgccttcag acatcttcca gatacaggca acaatgattt atgcaaacac cattaatact 360
tttcggatta aatctggaaa tgaaaatgga gagttctacc tacgacaaac aagccctgtg 420
agtgcaatgc tggtgcttgt gaagtctcta tcaggaccaa gagaatacat cgtggacctg 480
gagatgctga cagtcagtag tataggaacc ttccgcacaa gctctgtgtt aagattgaca 540
ataatagtgg ggccattttc attttagcct tttactcata taaagcctac tacaagcatt 600
taaatcagcc aaacaatatc attaccttaa aactctattt tatttatagc tatatctagt 660
acatgtatat tcaaatagct agactatggt aagaagtggg catttaatcc ataagagtca 720
atgtttatcg ttatcactgt gtgtaaatta gacctttatc caacattaag agagctaatc 780
atatattatc tagtgaaact tggattcttt cctgcaaaat gggaccaagc aaggatactg 840
ttctgtgttg tatagagaaa tatacacctc cacagaccat cccgtgagaa ttggccatct 900
tagcatgaag atcaagaagg agggtttttt taactgcttt gtaagaaaat ggaaaaaagt 960
caataaagat atatttcttt agaaaatgag aaaaaaaaaa aaaa 1004
//