Dbfetch
ID BC019447; SV 1; linear; mRNA; STD; MUS; 1672 BP. XX AC BC019447; XX DT 04-JAN-2002 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 14) XX DE Mus musculus serine (or cysteine) peptidase inhibitor, clade C DE (antithrombin), member 1, mRNA (cDNA clone MGC:30300 IMAGE:5125534), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1672 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-1672 RG NIH MGC Project RA ; RT ; RL Submitted (19-DEC-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 242ef5c3c366ab0e4ab1b06ae9e528a8. DR Ensembl-Gn; ENSMUSG00000026715; mus_musculus. DR Ensembl-Tr; ENSMUST00000064725; mus_musculus. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey E. Green, M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 41 Row: n Column: 23 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: Hexamer frequency ORF CC analysis, Similarity but not identity to protein. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..1672 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Li9" FT /clone="MGC:30300 IMAGE:5125534" FT /tissue_type="Liver, normal. 5 month old male mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..1672 FT /gene="Serpinc1" FT /note="synonym: ATIII" FT CDS 173..1570 FT /codon_start=1 FT /gene="Serpinc1" FT /product="serine (or cysteine) peptidase inhibitor, clade C FT (antithrombin), member 1" FT /db_xref="GOA:P32261" FT /db_xref="InterPro:IPR000215" FT /db_xref="InterPro:IPR015555" FT /db_xref="InterPro:IPR023795" FT /db_xref="InterPro:IPR023796" FT /db_xref="InterPro:IPR033829" FT /db_xref="InterPro:IPR036186" FT /db_xref="InterPro:IPR042178" FT /db_xref="InterPro:IPR042185" FT /db_xref="MGI:MGI:88095" FT /db_xref="UniProtKB/Swiss-Prot:P32261" FT /protein_id="AAH19447.1" FT /translation="MYSPGAGSGAAGERKLCLLSLLLIGALGCAICHGNPVDDICIAKP FT RDIPVNPLCIYRSPGKKATEEDGSEQKVPEATNRRVWELSKANSRFATNFYQHLADSKN FT DNDNIFLSPLSISTAFAMTKLGACNDTLKQLMEVFKFDTISEKTSDQIHFFFAKLNCRL FT YRKANKSSDLVSANRLFGDKSLTFNESYQDVSEVVYGAKLQPLDFKENPEQSRVTINNW FT VANKTEGRIKDVIPQGAINELTALVLVNTIYFKGLWKSKFSPENTRKEPFYKVDGQSCP FT VPMMYQEGKFKYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEQELTPELLQEW FT LDELSETMLVVHMPRFRTEDGFSLKEQLQDMGLIDLFSPEKSQLPGIVAGGRDDLYVSD FT AFHKAFLEVNEEGSEAAASTSVVITGRSLNPNRVTFKANRPFLVLIREVALNTIIFMGR FT VANPCVN" FT misc_difference 1651..1672 FT /gene="Serpinc1" FT /note="polyA tail: 22 bases do not align to the mouse FT genome." XX SQ Sequence 1672 BP; 444 A; 437 C; 414 G; 377 T; 0 other; attttagtga agtggtgaga tataagacat aatcagaaga catatctacc tgaagacttt 60 aaggggagag ctccctcccc cacctggcct ctggacctct cagatttagg ggaaagaacc 120 agttttcgga gtgatcgtct cagtcagcac catctctgta ggagcatcgg ccatgtattc 180 ccctggggca ggaagtgggg ctgctggtga gaggaagctt tgtctcctct ctctgctcct 240 catcggtgcc ttgggctgtg ctatctgtca cggaaaccct gtggacgaca tctgcatagc 300 gaagccccga gacatccccg tgaatccctt gtgcatttac cgctcccctg ggaagaaggc 360 caccgaggag gatggctcag agcagaaggt tccagaagcc accaaccggc gggtctggga 420 actgtccaag gccaattcgc gatttgccac taacttctac cagcacctgg cagactccaa 480 gaatgacaac gacaacattt tcctgtcacc cttgagcatc tccactgctt ttgctatgac 540 caagctgggt gcctgtaacg acactctcaa gcagctgatg gaggttttta aatttgatac 600 catctccgag aagacatccg accagatcca cttcttcttt gccaaactga actgccgact 660 ctatcgaaaa gccaacaagt cctctgactt ggtatcagcc aaccgccttt ttggagacaa 720 atccctcacc ttcaacgaga gctatcaaga tgttagtgag gttgtctatg gagccaagct 780 ccagcccctg gacttcaagg agaatccgga gcaatccaga gtgaccatca acaactgggt 840 agctaataag actgaaggcc gcatcaaaga tgtcatccca cagggcgcca ttaacgagct 900 cactgccctg gttctggtta acaccattta cttcaagggc ctgtggaagt caaagttcag 960 ccctgagaac acaaggaagg aaccgttcta taaggtcgat gggcagtcat gcccagtgcc 1020 tatgatgtac caggaaggca aattcaaata ccggcgcgtg gcagagggca cccaggtgct 1080 agagctgccc ttcaaggggg atgacatcac catggtgctc atcctgccca agcctgagaa 1140 gagcctggcc aaggtggagc aggagctcac cccagagctg ctgcaggagt ggctggatga 1200 gctgtcagag actatgcttg tggtccacat gccccgcttc cgcaccgagg atggcttcag 1260 tctgaaggag cagctgcaag acatgggcct cattgatctc ttcagccctg aaaagtccca 1320 actcccaggg atcgttgctg gaggcaggga cgacctctat gtctccgacg cattccacaa 1380 agcatttctt gaggtaaatg aggaaggcag tgaagcagca gcgagtactt ctgtcgtgat 1440 tactggccgg tcactgaacc ccaatagggt gaccttcaag gccaacaggc ccttcctggt 1500 tcttataagg gaagttgcac tgaacactat tatattcatg gggagagtgg ctaatccttg 1560 tgtgaactaa aatattctta atctttgcac cttttcctac tttggtgttt gtgaatagaa 1620 gtaaaaataa atacgactgc cacctcacga aaaaaaaaaa aaaaaaaaaa aa 1672 //