Dbfetch
ID BC019172; SV 1; linear; mRNA; STD; MUS; 962 BP. XX AC BC019172; XX DT 14-DEC-2001 (Rel. 70, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus CD200 antigen, mRNA (cDNA clone MGC:29086 IMAGE:5003655), DE complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-962 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-962 RG NIH MGC Project RA ; RT ; RL Submitted (07-DEC-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 8358d9039b7ba07d33b16babb1bf0b01. DR Ensembl-Gn; ENSMUSG00000022661; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022851; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022816; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022788; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022817; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022581; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023264; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022106; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022552; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022684; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022660; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022752; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022678; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023279; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021846; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022151; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000166512; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0044565; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0044542; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0044517; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0044518; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0044260; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0045001; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0044377; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0044175; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0044326; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0044280; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0044403; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0044256; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0045058; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0043958; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0043634; mus_musculus_wsbeij. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Gilbert Smith, Ph.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: National Institutes of Health Intramural CC Sequencing Center (NISC), CC Gaithersburg, Maryland; CC Web site: http://www.nisc.nih.gov/ CC Contact: nisc_mgc@nhgri.nih.gov CC Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., CC Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., CC Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., CC Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., CC Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., CC McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., CC Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., CC Young,A., Zhang,L.-H. and Green,E.D. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 39 Row: c Column: 22 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31543262. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..962 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N-3" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam2" FT /clone="MGC:29086 IMAGE:5003655" FT /tissue_type="Mammary tumor. MMTV-LTR/INT3 model. 5 month FT old mouse. Taken by biopsy." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..962 FT /gene="Cd200" FT /note="synonym: OX2" FT misc_difference 1..11 FT /gene="Cd200" FT /note="11 bases at the 5' end do not align to the mouse FT genome." FT CDS 57..509 FT /codon_start=1 FT /gene="Cd200" FT /product="Cd200 protein" FT /db_xref="GOA:Q05D16" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013106" FT /db_xref="InterPro:IPR013151" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR033321" FT /db_xref="InterPro:IPR036179" FT /db_xref="MGI:MGI:1196990" FT /db_xref="UniProtKB/TrEMBL:Q05D16" FT /protein_id="AAH19172.1" FT /translation="MGSLVFRRPFCHLSTYSLIWGMAAVALSTAQVEVVTQDERKALHT FT TASLRCSLKTSQEPLIVTWQKKKAVSPENMVTYSKTHGVVIQPAYKDRINVTELGLWNS FT SITFWNTTLEDEGCYMCLFNTFGSQKVSGTACLTLYAHSTPSLQLF" FT misc_difference 218 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome; no amino FT acid change." FT misc_difference 407 FT /gene="Cd200" FT /note="'T' in cDNA is 'C' in the mouse genome; no amino FT acid change." FT misc_difference 802 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 858 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 890 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 896 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 902..903 FT /gene="Cd200" FT /note="in the mouse genome : AG." FT misc_difference 906^907 FT /gene="Cd200" FT /note="1 base in the mouse genome, T, is not found in FT cDNA." FT misc_difference 910..911 FT /gene="Cd200" FT /note="in the mouse genome : GA." FT misc_difference 919 FT /gene="Cd200" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 923 FT /gene="Cd200" FT /note="1 base in cDNA is not found in the mouse genome." FT misc_difference 929 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 935 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 937^938 FT /gene="Cd200" FT /note="1 base in the mouse genome, A, is not found in FT cDNA." FT misc_difference 941 FT /gene="Cd200" FT /note="'G' in cDNA is 'A' in the mouse genome." FT misc_difference 943 FT /gene="Cd200" FT /note="'A' in cDNA is 'G' in the mouse genome." FT misc_difference 948..962 FT /gene="Cd200" FT /note="polyA tail: 15 bases do not align to the mouse FT genome." XX SQ Sequence 962 BP; 298 A; 225 C; 234 G; 205 T; 0 other; ccacgcgtcc gctcagaccc cgagaagctg gtgtctagct gcggcccaga gcaaggatgg 60 gcagtctggt attcaggaga cctttctgcc atctctccac ctacagcctg atttggggca 120 tggcagcagt agcgctgagc acagctcaag tggaagtggt gacccaggat gaaagaaagg 180 cgctgcacac aactgcatcc ttacgatgtt ctctaaagac atcccaggaa cccttgattg 240 tgacatggca gaaaaagaaa gccgtgagcc cagaaaacat ggtcacctac agcaaaaccc 300 atggggttgt aatccagcct gcctacaaag acaggataaa tgtcacagag ctgggactct 360 ggaactcaag catcaccttc tggaacacaa cattggaaga tgagggttgc tacatgtgtc 420 tcttcaacac gtttggttct cagaaggtct caggaacagc ttgccttacc ctctatgccc 480 atagtacacc ttcactacaa ctattttgaa gaccacctaa acatcacttg ctctgcgact 540 gcccgtccag cccctgccat ctcctggaag ggtactggga caggaattga gaatagtacc 600 gagagtcact tccattcaaa tgggactaca tctgtcacca gcatcctccg ggtcaaagac 660 cccaaaactc aagttgggaa ggaagtgatc tgccaggttt tatacctggg gaatgtgatt 720 gactacaagc agagtctgga caaaggattt tggttttcag ttccactgtt gctaagcatt 780 gtttctctgg taattcttct ggtcttgatc tccatcttac tatactggaa acgtcaccga 840 aatcaggagc ggggtgagtc atcacagggg atgcaaagaa tgaaataagg aagaagaaga 900 agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaagaagaaa aaaaaaaaaa 960 aa 962 //