Dbfetch

ID   BC019137; SV 1; linear; mRNA; STD; MUS; 3010 BP.
XX
AC   BC019137;
XX
DT   13-DEC-2001 (Rel. 70, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 12)
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DE   Mus musculus solute carrier family 11 (proton-coupled divalent metal ion
DE   transporters), member 2, mRNA (cDNA clone MGC:29081 IMAGE:5040976),
DE   complete cds.
XX
KW   MGC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3010
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-3010
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (07-DEC-2001) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
XX
DR   MD5; 3f2c35f7488edb1a5cd2bb57ee082aa8.
DR   Ensembl-Gn; ENSMUSG00000023030; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0022350; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0022312; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0022288; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0022316; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0022086; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0022764; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0021611; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0022055; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0022182; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0022161; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0022253; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0022182; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0022778; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0021350; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0021661; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000023774; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000138843; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0042605; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0042569; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0042533; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0042560; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0042296; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0043045; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0042396; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0042210; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0042361; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0042326; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0042432; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0042304; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0043083; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0041978; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0041686; mus_musculus_wsbeij.
DR   EuropePMC; PMC1885515; 17299088.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Jeffrey E. Green, M.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: National Institutes of Health Intramural
CC   Sequencing Center (NISC),
CC   Gaithersburg, Maryland;
CC   Web site: http://www.nisc.nih.gov/
CC   Contact: nisc_mgc@nhgri.nih.gov
CC   Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
CC   Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
CC   Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
CC   Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
CC   Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
CC   McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
CC   Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
CC   Young,A., Zhang,L.-H. and Green,E.D.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 39 Row: k Column: 7
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 6677988.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3010
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="FVB/N"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Kid14"
FT                   /clone="MGC:29081 IMAGE:5040976"
FT                   /tissue_type="Kidney, normal. 5 month old male mouse."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            1..3010
FT                   /gene="Slc11a2"
FT                   /note="synonyms: DCT1, DMT1"
FT   misc_difference 1..4
FT                   /gene="Slc11a2"
FT                   /note="4 bases at the 5' end do not align to the mouse
FT                   genome."
FT   misc_difference 6
FT                   /gene="Slc11a2"
FT                   /note="'C' in cDNA is 'G' in the mouse genome."
FT   misc_difference 10..11
FT                   /gene="Slc11a2"
FT                   /note="in the mouse genome : GC."
FT   CDS             107..1813
FT                   /codon_start=1
FT                   /gene="Slc11a2"
FT                   /product="solute carrier family 11 (proton-coupled divalent
FT                   metal ion transporters), member 2"
FT                   /db_xref="GOA:P49282"
FT                   /db_xref="InterPro:IPR001046"
FT                   /db_xref="MGI:MGI:1345279"
FT                   /db_xref="UniProtKB/Swiss-Prot:P49282"
FT                   /protein_id="AAH19137.1"
FT                   /translation="MVLDPKEKMPDDGASGDHGDSASLGAINPAYSNSSLPHSTGDSEE
FT                   PFTTYFDEKIPIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKL
FT                   LWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQ
FT                   EVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTF
FT                   GYEYITVKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQV
FT                   NRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVVEVCKNNSSP
FT                   HADLFPSDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVME
FT                   GFLNLKWSRFARVILTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPIL
FT                   TFTSLRPVMSEFSNGIGWRIAGGILVLIVCSINMYFVVVYVQELGHVALYVVAAVVSVA
FT                   YLTFVFYLGWQCLIALGLSFLDCGRSYRLGLTAQPELYLLNTVDADSVVSR"
FT   misc_difference 3000..3010
FT                   /gene="Slc11a2"
FT                   /note="polyA tail: 11 bases do not align to the mouse
FT                   genome."
XX
SQ   Sequence 3010 BP; 606 A; 762 C; 802 G; 840 T; 0 other;
     ccacgcgtcc gcgctggctc ctgggatatg gagtcgccgg cgcggcgtgt gtggaggtgg        60
     cggagccgaa tcctattcta agagcacaga ccctcaggta tctaccatgg tgttggatcc       120
     taaagaaaag atgccagacg atggcgcttc tggggaccat ggagactctg ccagccttgg       180
     cgccatcaac cctgcctaca gcaactcatc cctcccacat tccactggag actctgagga       240
     gcccttcacc acctactttg atgagaaaat ccccattcct gaggaggagt actcttgttt       300
     tagctttcgt aaactctggg cgttcacggg gcctggcttt cttatgagca ttgcctacct       360
     agacccagga aacatcgaat ctgatttgca gtctggagca gtggctggat ttaagctgct       420
     ctgggtgctc ctcttggcca ccattgtggg gctgctgctc cagcgccttg cagcgagact       480
     tggagtggtc accggcttgc atcttgctga agtatgtcac cgtcagtatc ccaaggtccc       540
     acggatcatc ctgtggctga tggtggagtt ggcaatcatt ggttctgaca tgcaggaagt       600
     cattggctca gccatcgcca tcaatctcct gtctgcagga agggtccccc tgtggggcgg       660
     agtcctcatc accatcgcag acacttttgt gtttcttttt ttggacaaat atggcttgcg       720
     gaagctggaa gcgttttttg gctttctcat cactatcatg gccctcacgt ttggatatga       780
     gtacattaca gtgaagccca gccagagcca agtactcagg ggcatgttcg tgccgtcctg       840
     tccagggtgc cgcacccctc aggtggagca ggcggtgggc atcgtgggag ctgtgatcat       900
     gccgcacaac atgtacctgc attctgcctt agtcaagtct agacaggtga atcgggccaa       960
     taagcaggaa gtgcgggaag ccaataagta cttcttcatc gagtcctgca tcgcgctctt      1020
     tgtttccttc atcatcaatg tctttgtcgt gtccgtcttt gctgaagcat tttttgagaa      1080
     aaccaacaag caggtggttg aagtctgcaa aaataacagc agcccccatg ctgacctctt      1140
     tcccagtgac aactctactc tggctgtgga catctacaaa gggggtgttg tgcttggatg      1200
     ttacttcggg cctgcagctc tctacatctg ggcagtgggg atcctggctg ccggtcagag      1260
     ctccaccatg actggaacct attctggcca gtttgtcatg gagggattcc tgaacctaaa      1320
     atggtcgcgc tttgcccgag tgatcctgac ccggtctatc gccatcatcc ccaccctgct      1380
     cgtcgctgtc ttccaggatg tggagcacct aacggggatg aatgacttcc tgaatgtcct      1440
     gcagagctta cagctcccct ttgctctcat acccatcctc acgttcacaa gcctgcggcc      1500
     agtgatgagt gagttttcca atggaatagg ctggaggatt gccggtggca tcctggtcct      1560
     gatcgtctgc tccatcaaca tgtactttgt agtggtttat gtccaggagc tagggcatgt      1620
     ggcactctat gtggtggctg cagtggttag cgtggcttat ttgacctttg tgttctactt      1680
     gggttggcag tgtttgattg cattgggtct gtctttcctg gactgtggac gctcgtaccg      1740
     cctgggactg accgctcagc ctgaactcta tcttctgaac accgtggatg ctgactcagt      1800
     ggtgtccaga tgactaacag cccaggagac cttaagaaca ctttctctaa gccctttcgg      1860
     gccaagtgcc tgttagcaaa tcccttagtt cggaggtgag cttgttcaaa ggtttttgaa      1920
     caaaggagaa gttctcctca cggactcagg gtaaaagctg acagttgcgt atgggtcaga      1980
     gacccttcgg aggcagtggg cctgtggcag ctgtgcagtc cctcaggctt gtgtctgcac      2040
     ttctggggtt taaagtgtat cgatatgtat ttatgtgaac ccaaacgtgc cagtttgggt      2100
     aagattttaa ggttataaaa cttgatagat ttttacaaat gcctttcagg tgagttaggt      2160
     ctttgttcta tttgggtaac aaatgagaaa gggacctttc tgacgatgaa cttccccaaa      2220
     ataactcttg aagcgctgct ttaccacagt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt      2280
     gcgcgcgcgc gtgcctgcct gcttctgctt gtgggggcca cgggttggca tcaggtgtct      2340
     ccagtctcta ccacagtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg      2400
     tgtgtgcgtg cgcgagtgcc tgcctgcttc tgcttgtggg ggccacgggt tggcatcagg      2460
     tgtctccagt ctctctctga acatggagtt cagtgtgtga ctgagctagc cagccagtaa      2520
     gttcaaggat cctcctggcc tcgcgcccca acactgtggt cccagatcag ctgctacgcc      2580
     cagattttac acagtgctgg ggacccaaac tcaggtcttc ctggacagca ggtactttac      2640
     caactttccc cctttgtctc tacatcaagt gtgtctgtgg ctgttgttcc gttggtgtct      2700
     gtccacctgc cctttcttcc cactctacgc gctgacactc cacacactgt cctcaccctg      2760
     tctctaaggg ccgcccgtat gtgtaccgct gagtgtcctg aggaatttaa gcattttaag      2820
     gtgtgtgtta gcagaggtct gaggctcgca ctcgatggga acacagacca tcagtttcac      2880
     tttaagcacc gacactccaa acgcgcgtgt gcaggtagtg aagctttttg gtttttgctt      2940
     taatcccaac cagaaataat catccttgtt ataataaagt tcatgcttaa tagctaaaaa      3000
     aaaaaaaaaa                                                             3010
//