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EBI Dbfetch

ID   BC018194; SV 1; linear; mRNA; HTC; MUS; 2226 BP.
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AC   BC018194;
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DT   10-DEC-2001 (Rel. 70, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 15)
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DE   Mus musculus cDNA clone IMAGE:3981507, containing frame-shift errors.
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KW   HTC.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
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RN   [1]
RP   1-2226
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-2226
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (03-DEC-2001) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; f310ee4039c5b99ad47451234a3f3389.
DR   Ensembl-Gn; ENSMUSG00000020260; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000020493; mus_musculus.
DR   GOA; Q8VHI3.
DR   InterPro; IPR019378; GDP-Fuc_O-FucTrfase.
DR   MGI; MGI:1916863; Pofut2.
DR   UniProtKB/Swiss-Prot; Q8VHI3; OFUT2_MOUSE.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Gilbert Smith, Ph.D.
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Baylor College of Medicine Human Genome
CC   Sequencing Center
CC   Center code: BCM-HGSC
CC   Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC   Contact: amg@bcm.tmc.edu
CC   Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC   Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC   A.N., Gibbs, R.A.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 30 Row: f Column: 9
CC   This clone was selected for full length sequencing because it
CC   passed the following selection criteria: matched mRNA gi: 19525730
CC   This clone has the following problem: frame shifted.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 36) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2226
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="FVB/N"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam1"
FT                   /clone="IMAGE:3981507"
FT                   /tissue_type="Mammary tumor. Metallothionien-TGF alpha
FT                   model. 10 month old virgin mouse. Taken by biopsy."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   misc_difference 5
FT                   /note="'C' in cDNA is 'T' in the mouse genome."
FT   misc_difference 12
FT                   /note="'G' in cDNA is 'C' in the mouse genome."
FT   misc_difference 12^13
FT                   /note="1 base in the mouse genome, C, is not found in
FT                   cDNA."
FT   misc_difference 1165
FT                   /note="1 base in cDNA is not found in the mouse genome."
FT   misc_difference 2208..2226
FT                   /note="polyA tail: 19 bases do not align to the mouse
FT                   genome."
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SQ   Sequence 2226 BP; 509 A; 640 C; 628 G; 449 T; 0 other;
     cggacgcgtg gggccggggc catggcggcg ctcagcgtcg tctgcctgct gctggcagcg        60
     gcatcctggc ggccggtctc ggcttcagga gaagaattct ggcctggcca gtcggcggcg       120
     gacatcctgt cgggggcggc atcccgcaga cggtacctcc tgtatgatgt caacccccca       180
     gaaggcttca atctccgcag ggatgtctat atccgggtgg catccttgct gaagacgctg       240
     ttgaagactg aagagtgggt gctagtcctg cccccgtggg gccgcctcta ccactggcaa       300
     agccctgaca tccaccaggt ccggattccc tggtccgagt tttttgacct cccgagtctc       360
     aataaaaaca tccccgttat agagtatgag cagttcattg cagagtccgg cgggcccttt       420
     atcgaccagg tgtacgtcct acaaggttac gccgagggct ggaaggaggg cacctgggag       480
     gagaaggtgg acgcacggcc ctgtattgac cctctgctgt actcgcagga caagcatgag       540
     tattacagag gctggttttg gggctacgaa gaaacacggg gtctgaatgt ctcctgcctg       600
     tccgtccagg ggtcggcttc catcgtcgcg cctgtcctct taaaaaacac atctgctcgg       660
     tctgtgatgc tggaccgagc tgagaatctg cttcatgacc actatggagg ccgggagtac       720
     tgggataccc ggcgcagcat ggtgtttgca aagcacttgc gggctgtggg agacgagttt       780
     aggagccagc acctcaactc gacggatgcc gctgataaga tggccccgga ggaagactgg       840
     acgaagatga aggtcaaact gggctcagca ctaggcggcc cctacctcgg agtccacctg       900
     agaaggaagg acttcatctg gggccacagg gaggatgtgc ccagcctgga gggcgccgtg       960
     aagaagatcc gcagcctcat gaagactcat cagctggaca aggtgttcgt ggccacagac      1020
     gccatcagga aggagcagga agaattgagg aagctgctgc cggaaatggt gaggtttgag      1080
     cccacgtggg aggagctgga gctgtacaag gacggaggcg tcgccatcat cgatcagtgg      1140
     atctgcgctc atgccaggtt tttttattgg cacctctgtt tccacatttt cctttcggat      1200
     tcatgaagag agagagatcc tggggttgga ccccaagaca acatacaacc ggttttgtgg      1260
     agaccaggag aaagcatgtg agcagcccac acactggaag attgcgtact gagggccacc      1320
     tatccaccgc ctgccaatca ctcggtcaca gggtcccaga ggaggccccc acatgggagg      1380
     caacacatct agagcccatg ctcccacgtg tccgtgggcc gacatctacc tgtgtctagg      1440
     ctctgccacc ttcaggattc acaactgtgt cttctctcag gacctgagaa cccacgtccc      1500
     catcacagat gtcacatgtg tgctagtcca gaaatagaag aacatttgtc agctccgaca      1560
     caggcctctc agccaccttc ctgaacaagt tgagcatggc cagcctgtgg caatgccctc      1620
     aggtgtggat gcgggctcct gaggtgttgg ggtgactgac gactgaggtc acttcacaca      1680
     tggccagcgt gagccgacac caagccttgc ctcagcctcc acctgtgggg ctcccactaa      1740
     tttcctcctg gatggaacga ctcgggcact gttgtcatca gagtgacagc cctggagcct      1800
     tgccagtgac ttcctcgcct cacatggacc cccaggttca ctgcacacgc tgagaaatag      1860
     aattgagaag taaaggaaat ggccttcaaa aggccacacc tgagacccgc ccctgcttta      1920
     tgacaccctt ccctgggcct catgctgtac cacaggaggc agagtcagca cagccgtggc      1980
     cagggcaccc ccaggtccct gacctggtac ttagcagtgc acccctcccc ccagtgctgt      2040
     gcactgagca gcccccactc agctactgcc aggtctccgt cccaagcacc aaggtagact      2100
     ctgagcacag acagggcccc gtggcccagt cagctgacca gctagaatca catatttatt      2160
     ttccatttgt acatccaagc gtattaataa aatacttttt caagaaaaaa aaaaaaaaaa      2220
     aaaaaa                                                                 2226
//


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