ID BC012313; SV 1; linear; mRNA; STD; MUS; 2345 BP.
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AC BC012313;
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DT 09-AUG-2001 (Rel. 68, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 11)
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DE Mus musculus transferrin, mRNA (cDNA clone MGC:18734 IMAGE:3981648),
DE complete cds.
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KW MGC.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2345
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-2345
RG NIH MGC Project
RA ;
RT ;
RL Submitted (06-AUG-2001) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR MD5; 92c8e5b156db26e019a49284f70d033a.
DR Ensembl-Gn; ENSMUSG00000032554; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0035196; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0035176; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0035108; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0035169; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0034879; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0035689; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0034191; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0034848; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0035009; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0034957; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0035085; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0034996; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0035711; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_WSBEiJ_G0034311; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000035158; mus_musculus.
DR Ensembl-Tr; ENSMUST00000112645; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0093929; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0094013; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0093966; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0093939; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0093516; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0094453; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0094114; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0093435; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0093645; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0093499; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0093653; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0093475; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0094780; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_WSBEiJ_T0092513; mus_musculus_wsbeij.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Gilbert Smith, Ph.D.
CC cDNA Library Preparation: Life Technologies, Inc.
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Baylor College of Medicine Human Genome
CC Sequencing Center
CC Center code: BCM-HGSC
CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/
CC Contact: amg@bcm.tmc.edu
CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
CC A.N., Gibbs, R.A.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 23 Row: k Column: 17
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 20330801.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
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FH Key Location/Qualifiers
FH
FT source 1..2345
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="FVB/N"
FT /mol_type="mRNA"
FT /clone_lib="NCI_CGAP_Mam1"
FT /clone="MGC:18734 IMAGE:3981648"
FT /tissue_type="Mammary tumor. Metallothionien-TGF alpha
FT model. 10 month old virgin mouse. Taken by biopsy."
FT /note="Vector: pCMV-SPORT6"
FT /db_xref="taxon:10090"
FT gene 1..2345
FT /gene="Trf"
FT /note="synonyms: Tfn, Cd176, HP"
FT misc_difference 14
FT /gene="Trf"
FT /note="'T' in cDNA is 'G' in the mouse genome."
FT CDS 71..2164
FT /codon_start=1
FT /gene="Trf"
FT /product="transferrin"
FT /db_xref="GOA:Q921I1"
FT /db_xref="InterPro:IPR001156"
FT /db_xref="InterPro:IPR016357"
FT /db_xref="InterPro:IPR018195"
FT /db_xref="InterPro:IPR030685"
FT /db_xref="MGI:MGI:98821"
FT /db_xref="UniProtKB/Swiss-Prot:Q921I1"
FT /protein_id="AAH12313.1"
FT /translation="MRLTVGALLACAALGLCLAVPDKTVKWCAVSEHENTKCISFRDHM
FT KTVLPPDGPRLACVKKTSYPDCIKAISASEADAMTLDGGWVYDAGLTPNNLKPVAAEFY
FT GSVEHPQTYYYAVAVVKKGTDFQLNQLEGKKSCHTGLGRSAGWVIPIGLLFCKLSEPRS
FT PLEKAVSSFFSGSCVPCADPVAFPKLCQLCPGCGCSSTQPFFGYVGAFKCLKDGGGDVA
FT FVKHTTIFEVLPEKADRDQYELLCLDNTRKPVDQYEDCYLARIPSHAVVARKNNGKEDL
FT IWEILKVAQEHFGKGKSKDFQLFSSPLGKDLLFKDSAFGLLRVPPRMDYRLYLGHNYVT
FT AIRNQQEGVCPEGSIDNSPVKWCALSHLERTKCDEWSIISEGKIECESAETTEDCIEKI
FT VNGEADAMTLDGGHAYIAGQCGLVPVMAEYYESSNCAIPSQQGIFPKGYYAVAVVKASD
FT TSITWNNLKGKKSCHTGVDRTAGWNIPMGMLYNRINHCKFDEFFSQGCAPGYEKNSTLC
FT DLCIGPLKCAPNNKEEYNGYTGAFRCLVEKGDVAFVKHQTVLDNTEGKNPAEWAKNLKQ
FT EDFELLCPDGTRKPVKDFASCHLAQAPNHVVVSRKEKAARVKAVLTSQETLFGGSDCTG
FT NFCLFKSTTKDLLFRDDTKCFVKLPEGTTPEKYLGAEYMQSVGNMRKCSTSRLLEACTF
FT HKH"
FT misc_difference 181
FT /gene="Trf"
FT /note="'A' in cDNA is 'G' in the mouse genome; no amino
FT acid change."
FT misc_difference 679
FT /gene="Trf"
FT /note="'G' in cDNA is 'A' in the mouse genome; no amino
FT acid change."
FT misc_difference 1996
FT /gene="Trf"
FT /note="'T' in cDNA is 'C' in the mouse genome; no amino
FT acid change."
FT misc_difference 2258
FT /gene="Trf"
FT /note="'A' in cDNA is 'G' in the mouse genome."
FT misc_difference 2333..2345
FT /gene="Trf"
FT /note="polyA tail: 13 bases do not align to the mouse
FT genome."
XX
SQ Sequence 2345 BP; 591 A; 592 C; 638 G; 524 T; 0 other;
gccacgggca ggctgcgcag aagcgggtcg gtctgtactc cccgctcctc gccacacaca 60
caccgagagg atgaggctca ccgtgggtgc cctgctggcc tgcgctgccc tggggctgtg 120
tctggctgtc cctgacaaaa cggtcaaatg gtgcgcagtg tcagagcacg agaataccaa 180
atgcatcagc ttccgtgacc acatgaagac cgtccttccg cctgatggcc cccggcttgc 240
ctgtgtgaag aaaacctcct atccggattg catcaaggcc atttctgcaa gtgaagccga 300
tgctatgacc ttggatgggg gttgggtgta cgatgccggc ctgactccga acaacctgaa 360
gcccgtggcg gcggagtttt atggatcagt ggaacatcca cagacctact actacgctgt 420
ggctgtggta aagaagggaa cagacttcca gctgaaccag ctcgaaggca agaagtcctg 480
ccacacaggc ctgggaaggt ctgcaggctg ggtcatcccc attggcttgc tcttctgtaa 540
gctgtcggag ccccgcagtc ctcttgagaa agctgtgtcc agtttcttct cgggcagttg 600
tgtcccctgt gcagatccag tggccttccc caaactgtgt caactgtgcc caggctgtgg 660
ctgctcctcc actcaaccgt tctttggcta cgtaggcgca ttcaagtgtc tgaaagatgg 720
cggtggggat gtggcctttg tcaagcacac aaccatattt gaggtcttgc cggagaaggc 780
tgacagggac caatatgaac tgctctgcct tgacaatacc cgcaagccag tggatcagta 840
tgaggattgc tacctggctc ggatcccttc tcatgctgtt gtggctcgaa aaaacaatgg 900
caaggaagac ttgatctggg agattctcaa agtggcacag gaacactttg gcaaaggcaa 960
atcaaaagac ttccaactgt tcagctctcc tcttgggaaa gacctgctgt ttaaagattc 1020
tgcctttggg ctgttaaggg tccccccaag gatggactac aggctgtacc ttggccataa 1080
ctatgtcact gccattcgga atcagcagga aggcgtgtgc ccggagggct cgatcgacaa 1140
ctcgccagtg aagtggtgtg cactgagtca cctggagaga accaagtgtg acgagtggag 1200
catcatcagt gagggaaaga tagagtgtga gtcagcagag accactgagg actgcattga 1260
aaagattgtg aacggagaag cggacgccat gactttggat ggaggacatg cctacattgc 1320
aggccagtgt ggtctagtgc ctgtcatggc agagtactac gagagctcta attgtgccat 1380
cccatcacaa caaggtatct ttcctaaagg gtattatgcc gtggctgtgg tgaaggcatc 1440
ggacactagc atcacctgga acaacctgaa aggcaagaag tcctgccaca ctggggtaga 1500
cagaaccgct ggttggaaca tccctatggg catgctgtac aacaggatca accactgcaa 1560
attcgatgaa tttttcagtc aaggctgcgc tcccgggtat gagaagaatt ccaccctctg 1620
tgacctgtgt attggcccac tcaaatgtgc tccgaacaac aaagaggaat ataatggtta 1680
cacaggggct ttcaggtgtc tcgttgagaa aggagatgta gcctttgtga aacaccagac 1740
tgtcctggat aacaccgaag gaaagaaccc tgccgaatgg gctaagaatc tgaagcagga 1800
agacttcgag ttgctctgcc ctgatggcac caggaagcct gtgaaagatt ttgccagctg 1860
ccacctggcc caagctccaa accatgttgt ggtctcacga aaagagaagg cagcccgggt 1920
taaggctgta ctgactagcc aggagacttt atttggggga agtgactgca ccggcaattt 1980
ctgtttgttc aagtctacca ccaaggacct tctgttcagg gatgacacca aatgtttcgt 2040
taaacttcca gagggtacca cacctgaaaa atacttagga gcggagtaca tgcaatctgt 2100
cggtaacatg aggaagtgct caacctcacg actcctggaa gcctgcactt tccacaaaca 2160
ttaaaatcca agaggtgggt tgccactgtg gtggagacag atgctccctc ccgtggccca 2220
tgggcttctc ttggtcttca tgccctgagg ggttgggact aactggtgta gtcttcgctg 2280
ctgtgcctta ccacatacac agagcacaaa ataaaaacga ctgctgactt taaaaaaaaa 2340
aaaaa 2345
//
