Dbfetch
ID BC006863; SV 1; linear; mRNA; STD; MUS; 2475 BP. XX AC BC006863; XX DT 02-MAY-2001 (Rel. 67, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 12) XX DE Mus musculus fatty acid amide hydrolase, mRNA (cDNA clone MGC:11634 DE IMAGE:3595191), complete cds. XX KW MGC. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2475 RX DOI; 10.1073/pnas.242603899. RX PUBMED; 12477932. RG Mammalian Gene Collection Program Team RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F., RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H., RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K., RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F., RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S., RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J., RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J., RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M., RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X., RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G., RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C., RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I., RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.; RT "Generation and initial analysis of more than 15,000 full-length human and RT mouse cDNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002). XX RN [2] RC NIH-MGC Project URL: http://mgc.nci.nih.gov RP 1-2475 RG NIH MGC Project RA ; RT ; RL Submitted (27-APR-2001) to the INSDC. RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, RL MD 20892-2590, USA XX DR MD5; 34ac6011e51f08335eb85faec3de34c4. DR Ensembl-Gn; ENSMUSG00000034171; mus_musculus. DR Ensembl-Tr; ENSMUST00000049095; mus_musculus. XX CC Contact: MGC help desk CC Email: cgapbs-r@mail.nih.gov CC Tissue Procurement: Jeffrey Green M.D. CC cDNA Library Preparation: Life Technologies, Inc. CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) CC DNA Sequencing by: Baylor College of Medicine Human Genome CC Sequencing Center CC Center code: BCM-HGSC CC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ CC Contact: amg@bcm.tmc.edu CC Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., CC Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, CC A.N., Gibbs, R.A. CC Clone distribution: MGC clone distribution information can be found CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov CC Series: IRAK Plate: 16 Row: d Column: 11 CC This clone was selected for full length sequencing because it CC passed the following selection criteria: matched mRNA gi: 31542794. CC Differences found between this sequence and the mouse C57BL/6J CC genome (build 36) are described in misc_difference features below. XX FH Key Location/Qualifiers FH FT source 1..2475 FT /organism="Mus musculus" FT /lab_host="DH10B" FT /strain="FVB/N" FT /mol_type="mRNA" FT /clone_lib="NCI_CGAP_Mam6" FT /clone="MGC:11634 IMAGE:3595191" FT /tissue_type="Mammary tumor. C3(1)-Tag model. Infiltrating FT ductal carcinoma. 5 month old virgin mouse." FT /note="Vector: pCMV-SPORT6" FT /db_xref="taxon:10090" FT gene 1..2475 FT /gene="Faah" FT CDS 25..1764 FT /codon_start=1 FT /gene="Faah" FT /product="fatty acid amide hydrolase" FT /db_xref="GOA:O08914" FT /db_xref="InterPro:IPR020556" FT /db_xref="InterPro:IPR023631" FT /db_xref="InterPro:IPR030560" FT /db_xref="InterPro:IPR036928" FT /db_xref="MGI:MGI:109609" FT /db_xref="UniProtKB/Swiss-Prot:O08914" FT /protein_id="AAH06863.1" FT /translation="MVLSEVWTALSGLSGVCLACSLLSAAVVLRWTRSQTARGAVTRAR FT QKQRAGLETMDKAVQRFRLQNPDLDSQALLALPLLQLVQKLQSGELSPEAVLFTYLGKA FT WEVNKGTNCVTSYLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHASTLGLSLNEGVT FT SESDCVVVQVLKLQGAVPFVHTNVPQSMLSYDCSNPLFGQTMNPWKPSKSPGGSSGGEG FT ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKSCVYGQTAVQLSVG FT PMARDVDSLALCMKALLCEDLFRLDSTIPPLPFREEIYRSSRPLRVGYYETDNYTMPTP FT AMRRAVMETKQSLEAAGHTLVPFLPNNIPYALEVLSAGGLFSDGGCSFLQNFKGDFVDP FT CLGDLVLVLKLPRWFKKLLSFLLKPLFPRLAAFLNSMCPRSAEKLWELQHEIEMYRQSV FT IAQWKAMNLDVVLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDD FT AQMEHYKGYFGDMWDNILKKGMKKGIGLPVAVQCVALPWQEELCLRFMREVERLMTPEK FT RPS" FT misc_difference 238 FT /gene="Faah" FT /note="'C' in cDNA is 'G' in the mouse genome; amino acid FT difference: 'Q' in cDNA, 'E' in the mouse genome." FT misc_difference 2462..2475 FT /gene="Faah" FT /note="polyA tail: 14 bases do not align to the mouse FT genome." XX SQ Sequence 2475 BP; 503 A; 705 C; 696 G; 571 T; 0 other; ggtggcggtc ggctgcagga gatcatggtg ctgagcgaag tgtggaccgc gctgtctgga 60 ctctccgggg tttgcctagc ctgcagcttg ctgtcggcgg cggtggtcct gcgatggacc 120 aggagccaga ccgcccgggg cgcggtgacc agggcgcggc agaagcagcg agccggcctg 180 gagaccatgg acaaggcggt gcagcgcttc cggctgcaga atcctgacct ggattcacag 240 gccttgctgg ctctgcccct gctccaactg gtacagaagt tacagagtgg ggaactgtcc 300 ccagaagctg tgctctttac ctacctggga aaggcctggg aagtgaacaa agggaccaac 360 tgtgtgacct cctatctgac tgactgtgag actcagctgt cccaggcccc acggcagggc 420 ctgctctatg gcgtccccgt gagcctcaag gaatgcttca gctacaaggg ccatgcttcc 480 acactgggct taagtttgaa cgagggtgtg acatcggaga gtgactgtgt ggtggtgcag 540 gtactgaagc tgcagggagc tgtgcccttt gtgcacacca acgtccccca gtccatgcta 600 agctatgact gcagtaaccc cctctttggc cagaccatga acccgtggaa gccctccaag 660 agtccaggag gttcctcagg gggtgagggg gctctcattg gatctggagg ctcccctctg 720 ggtttaggca ctgacatcgg cggcagcatc cggttccctt ctgccttctg tggcatctgt 780 ggcctcaagc ctactgggaa ccgcctcagc aagagtggcc tgaagagctg tgtttatgga 840 cagacagcag tgcagctttc tgttggcccc atggcacggg atgtggatag cctggcattg 900 tgcatgaaag ccctactttg tgaggatttg ttccgcttgg actccaccat cccccccttg 960 cccttcaggg aggagatcta cagaagttct cgaccccttc gtgtgggata ctatgaaact 1020 gacaactaca ccatgcccac tccagccatg aggagggctg tgatggagac caagcagagt 1080 ctcgaggctg ctggccacac gctggtcccc ttcttaccaa acaacatacc ttatgccctg 1140 gaggtcctgt cggcaggtgg gctgttcagt gatggtggct gctcttttct ccaaaacttc 1200 aaaggcgact ttgtggatcc ctgcttgggg gacctggtct tagtgctgaa gctgcccagg 1260 tggtttaaaa aactgctgag cttcctgctg aagcctctgt ttcctcggct ggcagccttt 1320 ctcaacagta tgtgtcctcg gtcagccgaa aagctgtggg aactgcagca tgagattgag 1380 atgtatcgcc agtccgtcat tgcccagtgg aaggcaatga acttggacgt ggtgctaacc 1440 cccatgctgg gtcctgctct ggatttgaac acaccgggca gagccacagg ggctatcagc 1500 tacactgttc tctataactg cctggacttc cctgcggggg tggtgcctgt caccactgtg 1560 accgctgagg acgatgccca gatggaacac tacaaaggct actttgggga tatgtgggac 1620 aacattctga agaagggcat gaaaaagggt ataggcctgc ctgtggctgt gcagtgcgtg 1680 gctctgccct ggcaggaaga gctgtgtctg cggttcatgc gggaggtgga acggctgatg 1740 acccctgaaa agcggccatc ttgagggtca ttcatctgcc cagctctgga ggacctaagg 1800 cccatgcgct ctgcactgca gccccatcta ttcaggatcc tgccacccat gaggagatgc 1860 ccagcacggg aagaggcaac cacctgccct cccctggact cctacagaaa cccaggacat 1920 gccctccata accaagtctg gaccttgctc ccctttctgg tctactttcc atcctgaccc 1980 cctactctat gtgacagccc agcaggaacg acacgggcca aggaccacca acagtcaaaa 2040 aaagcaatgt gtttctgtat ttttctgggt atttttctat taggaccttg gaaccagagc 2100 ctgctgagag ggctgtgctg tccctccaga gctggctgta atcatgtcac tctcctgctc 2160 caaagcctcc ctaggccatc acccacaagg tagacacagg gacatgtcct tggcacttgg 2220 ctcctgccct tccttccttg ttcagattgg ccccagcttt gatggacacc gcccgggtct 2280 tcctccctca ttccacctct ctctcttctg acttggcctt tttacttctc tagctgttgt 2340 agagaacaag gtttctctgt gtagccctgg ctgtccagga tctcactctg tagatcaggc 2400 tggctttcag ctcacaaggc tgcctgcctg ggtgctggga ttaaaggcgt gtgttaccag 2460 aaaaaaaaaa aaaaa 2475 //