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EBI Dbfetch

ID   BC006027; SV 1; linear; mRNA; STD; MUS; 1711 BP.
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AC   BC006027;
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DT   05-APR-2001 (Rel. 67, Created)
DT   13-SEP-2005 (Rel. 85, Last updated, Version 9)
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DE   Mus musculus platelet-derived growth factor, C polypeptide, mRNA (cDNA
DE   clone IMAGE:3487609), partial cds.
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KW   .
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
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RN   [1]
RP   1-1711
RX   DOI; 10.1073/pnas.242603899.
RX   PUBMED; 12477932.
RG   Mammalian Gene Collection Program Team
RA   Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA   Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA   Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA   Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA   Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA   Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA   Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA   Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA   Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA   Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA   Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA   Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA   Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA   Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA   Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT   "Generation and initial analysis of more than 15,000 full-length human and
RT   mouse cDNA sequences";
RL   Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN   [2]
RC   NIH-MGC Project URL: http://mgc.nci.nih.gov
RP   1-1711
RG   NIH MGC Project
RA   ;
RT   ;
RL   Submitted (02-APR-2001) to the INSDC.
RL   National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL   MD 20892-2590, USA
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DR   MD5; 251e9da842f46c49fdad5e778b6ebba6.
DR   Ensembl-Gn; ENSMUSG00000028019; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000029652; mus_musculus.
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CC   Contact: MGC help desk
CC   Email: cgapbs-r@mail.nih.gov
CC   Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
CC   cDNA Library Preparation: Life Technologies, Inc.
CC   cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC   DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC   Center, Stanford University School of Medicine, Stanford, CA  94305
CC   Web site:       http://www-shgc.stanford.edu
CC   Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
CC   Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC   R. M.
CC   Clone distribution: MGC clone distribution information can be found
CC   through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC   Series: IRAK Plate: 7 Row: a Column: 8.
CC   Differences found between this sequence and the mouse C57BL/6J
CC   genome (build 33) are described in misc_difference features below.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1711
FT                   /organism="Mus musculus"
FT                   /lab_host="DH10B"
FT                   /strain="mix FVB/N, C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="NCI_CGAP_Mam5"
FT                   /clone="IMAGE:3487609"
FT                   /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
FT                   old, gross tissue."
FT                   /note="Vector: pCMV-SPORT6"
FT                   /db_xref="taxon:10090"
FT   gene            <1..1711
FT                   /gene="Pdgfc"
FT   CDS             <1..107
FT                   /codon_start=3
FT                   /gene="Pdgfc"
FT                   /product="Pdgfc protein"
FT                   /db_xref="GOA:Q8CI19"
FT                   /db_xref="InterPro:IPR000072"
FT                   /db_xref="InterPro:IPR000859"
FT                   /db_xref="InterPro:IPR029034"
FT                   /db_xref="MGI:MGI:1859631"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8CI19"
FT                   /protein_id="AAH06027.1"
FT                   /translation="RPKTGVKGLHKSLTDVALEHHEECDCVCRGNAGG"
FT   misc_difference 583..661
FT                   /gene="Pdgfc"
FT                   /note="79 bases in cDNA are not found in the mouse genome;
FT                   Differences found between this sequence and the mouse
FT                   C57BL/6J genome (build 33) are described in misc_difference
FT                   features below"
FT   misc_difference 859
FT                   /gene="Pdgfc"
FT                   /note="'T' in cDNA is 'C' in the mouse genome; Differences
FT                   found between this sequence and the mouse C57BL/6J genome
FT                   (build 33) are described in misc_difference features below"
FT   misc_difference 1025
FT                   /gene="Pdgfc"
FT                   /note="'G' in cDNA is 'A' in the mouse genome; Differences
FT                   found between this sequence and the mouse C57BL/6J genome
FT                   (build 33) are described in misc_difference features below"
FT   misc_difference 1101
FT                   /gene="Pdgfc"
FT                   /note="'T' in cDNA is 'C' in the mouse genome; Differences
FT                   found between this sequence and the mouse C57BL/6J genome
FT                   (build 33) are described in misc_difference features below"
FT   misc_difference 1643..1711
FT                   /gene="Pdgfc"
FT                   /note="polyA tail: 69 bases do not align to the mouse
FT                   genome; Differences found between this sequence and the
FT                   mouse C57BL/6J genome (build 33) are described in
FT                   misc_difference features below"
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SQ   Sequence 1711 BP; 558 A; 315 C; 334 G; 504 T; 0 other;
     tgagaccaaa aactggagtc aagggattgc ataagtcact cactgatgtg gctctggaac        60
     accacgagga atgtgactgt gtgtgtagag gaaacgcagg agggtaactg cagccttcgt       120
     agcagcacac gtgagcactg gcattctgtg tacccccaca agcaaccttc atccccacca       180
     gcgttggccg cagggctctc agctgctgat gctggctatg gtaaagatct tactcgtctc       240
     caaccaaatt ctcagttgtt tgcttcaata gccttcccct gcaggacttc aagtgtcttc       300
     taaaagacca gaggcaccaa gaggagtcaa tcacaaagca ctgccttcta gaggaagccc       360
     agacaatggt cttctgacca cagaaacaaa tgaaatgaat gtagatcgct agcaaactct       420
     ggagtgacag catttctttt ccactgacag aatggtgtag cttagttgtc ttgatatggg       480
     caagtgatgt cagcacaaga aaatggtgaa aaacacacac ttgattgtga acaatgcaga       540
     aatacttgga tttctccaac ctgtttgcat agatagacag attggtgaaa aacacacact       600
     tgattgtgaa caatgcagaa atacttggat ttctccaacc tgtttgcata gatagacaga       660
     tgctctgttt tctacaaact caaagctttt agagagcagc tatgttaata ggaattaaat       720
     gtgccatgct gaaaggaaag actgaagttt tcaatgcttg gcaacttctc cgcaatttgg       780
     aggaaaggtg cggtcatggt ttggagaaag cacacctgca cagaggagtg gccttccctt       840
     cccttccctc tgaggtggtt tctgtgtttc attgtgtata tttttatatt ctccttttga       900
     cattataact gttggctttt ctaatcttgt taaatatttc tatttttacc aaaggtattt       960
     aatattcttt tttatgacaa cctagagcaa ttatttttag cttgataatt tttttttcta      1020
     aacagaattg ttatagccag aagaacaaag atgattgata taaaaatctt gttgctctga      1080
     caaaaacata tgtatttctt tcttgtatgg tgctagagct tagcgtcatc tgcatttgaa      1140
     aagatggaat ggggaagttt ttagaattgg taggtcgcag ggacagtttg ataacaactg      1200
     tactatcatc aattcccaat tctgttctta gagctacgaa cagaacagag cttgagtaaa      1260
     tatggagcca ttgctaacct acccctttct atgggaaata ggagtatagc tcagagaagc      1320
     acgtccccag aaacctcgac catttctagg cacagtgttc tgggctatgc tgcgctgtat      1380
     ggacatatcc tatttatttc aatactaggg ttttattacc tttaaactct gctccataca      1440
     cttgtattaa tacatggata tttttatgta cagaagtata tcatttaagg agttcactta      1500
     ttatactctt tggcaattgc aaagaaaatc aacataatac attgcttgta aatgcttaat      1560
     ctgtgcccaa gttttgtggt gactatttga attaaaatgt attgaatcat caaataaaat      1620
     aatctggcta ttttggggac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa      1680
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a                                     1711
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