Dbfetch

Dbfetch

ID   AY390764; SV 1; linear; mRNA; STD; MUS; 643 BP.
XX
AC   AY390764;
XX
DT   01-JAN-2009 (Rel. 98, Created)
DT   01-JAN-2009 (Rel. 98, Last updated, Version 1)
XX
DE   Mus musculus sigma 1 receptor variant SR-1A (Oprs1) mRNA, complete cds,
DE   alternatively spliced.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-643
RA   Pan L.P., Pasternak G.W., Pan Y.;
RT   "Identification and characterization of five new splice variants from the
RT   mouse sigma 1 receptor gene (Oprs1)";
RL   Unpublished.
XX
RN   [2]
RP   1-643
RA   Pan L.P., Pasternak G.W., Pan Y.;
RT   ;
RL   Submitted (15-SEP-2003) to the INSDC.
RL   Neurology, Memorial Sloan-Kettering Cancer Center, 1275 York Ave, New York,
RL   NY 10021, USA
XX
DR   MD5; 3a8f52d796c1780a329ef3c97a88d967.
DR   Ensembl-Gn; ENSMUSG00000036078; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0028171; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0028129; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0028092; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0028142; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0027880; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0028583; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0027325; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0027842; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0027986; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0027953; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0028094; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0027985; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0028641; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0027044; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0027401; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000071561; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0065163; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0065196; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0065132; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0065117; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0064844; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0065603; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0065156; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0064755; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0064878; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0064826; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0065010; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0064826; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0065820; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0064675; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0064054; mus_musculus_wsbeij.
DR   EuropePMC; PMC5370144; 28350844.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..643
FT                   /organism="Mus musculus"
FT                   /chromosome="4"
FT                   /map="A5-B2"
FT                   /strain="CD-1"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:10090"
FT   gene            1..643
FT                   /gene="Oprs1"
FT   CDS             1..579
FT                   /codon_start=1
FT                   /gene="Oprs1"
FT                   /product="sigma 1 receptor variant SR-1A"
FT                   /note="mSR-1A; alternatively spliced; lacks exon 3"
FT                   /db_xref="GOA:A2AMS0"
FT                   /db_xref="InterPro:IPR006716"
FT                   /db_xref="MGI:MGI:1195268"
FT                   /db_xref="UniProtKB/TrEMBL:A2AMS0"
FT                   /protein_id="AAR27306.1"
FT                   /translation="MPWAAGRRWAWITLILTIIAVLIQAAWLWLGTQNFVFSREEIAQL
FT                   ARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCILHASLSEYV
FT                   LLFGTALGSHGHSGETVVHGPGEATALEWGPNTWMVEYGRGVIPSTLFFALADTFFSTQ
FT                   DYLTLFYTLRAYARGLRLELTTYLFGQDS"
XX
SQ   Sequence 643 BP; 114 A; 187 C; 199 G; 143 T; 0 other;
     atgccgtggg ccgcgggacg gcggtgggca tggatcaccc tgattctgac tattatcgca        60
     gtgctgatcc aggccgcctg gttgtggctg ggcactcaaa acttcgtctt ctctagagaa       120
     gaaatagcgc agcttgctcg acagtatgcg gggctggacc atgagcttgc cttctctcgg       180
     ctgatcgtgg agctgcggag gctgcaccca ggccacgtgc tgccggatga ggagctgcag       240
     tgggtatttg tgaacgcggg cggctggatg ggcgccatgt gtattctgca cgcctcgctg       300
     tctgagtacg tgctgctctt cggcaccgcc ctgggctccc atggccattc gggagagaca       360
     gttgtacacg ggcctggaga agcaacggct ctggagtggg gaccaaacac gtggatggtg       420
     gagtacggcc ggggtgttat tccgtctacc ctgttctttg cactagccga cactttcttc       480
     agcacccagg actacctcac actcttctat acccttcggg cctatgcccg gggcctccgg       540
     cttgagctta ccacctacct ctttggccaa gactcctgac cagccaggcc tgaaggaaga       600
     tctgtggatg gacaggagcg cggcaggacc acatccatct ctc                         643
//