Dbfetch
ID AH013272; SV 2; linear; genomic DNA; STD; MUS; 3150 BP.
XX
AC AH013272; AY389528; AY389530; AY389532; AY389537; AY389539;
XX
DT 13-JUN-2016 (Rel. 129, Created)
DT 13-JUN-2016 (Rel. 129, Last updated, Version 1)
XX
DE Mus musculus strain AKR/J peroxisome proliferator-activated receptor gamma
DE 1 (Pparg) gene, partial cds.
XX
KW .
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3150
RA Sugawara K., Olson T., Moskaluk C.A., Stevens B., Hoang S., Kozaiwa K.,
RA Cominelli F., Ley K.F., McDuffie M.;
RT "Susceptibility to Crohn's disease is linked to PPARgamma in mouse and
RT man";
RL Unpublished.
XX
RN [2]
RP 1-3150
RA Sugawara K., Olson T., Moskaluk C.A., Stevens B., Hoang S., Kozaiwa K.,
RA Cominelli F., Ley K.F., McDuffie M.;
RT ;
RL Submitted (11-SEP-2003) to the INSDC.
RL Gastroenterology and Hepatology, University of Virginia, MR4 Room 1111,
RL Lane Road, Charlottesville, VA 22908, USA
XX
DR MD5; b02ca3087b444767b4ac1a88bddf2285.
XX
CC On or before Jun 10, 2016 this sequence version replaced
CC gi:37222489, gi:37222490, gi:37222491, gi:37222492, gi:37222493,
CC gi:37222488.
XX
FH Key Location/Qualifiers
FH
FT source 1..3150
FT /organism="Mus musculus"
FT /chromosome="6"
FT /map="116.1 Mb; between Hrh1 and Mbd4"
FT /strain="AKR/J"
FT /mol_type="genomic DNA"
FT /db_xref="taxon:10090"
FT gene 1..3150
FT /gene="Pparg"
FT regulatory 1..>1477
FT /gene="Pparg"
FT /regulatory_class="promoter"
FT gap 1478..1577
FT /estimated_length=unknown
FT mRNA join(1578..1997,2098..>2161)
FT /gene="Pparg"
FT /product="peroxisome proliferator-activated receptor gamma
FT 1"
FT exon 1578..1997
FT /gene="Pparg"
FT /number=A1
FT gap 1998..2097
FT /estimated_length=unknown
FT exon 2098..2161
FT /gene="Pparg"
FT /number=A2
FT gap 2162..2261
FT /estimated_length=unknown
FT mRNA join(<2262..2712,2813..3150)
FT /gene="Pparg"
FT /product="peroxisome proliferator-activated receptor gamma
FT 1"
FT CDS join(<2262..2712,2813..3060)
FT /codon_start=1
FT /gene="Pparg"
FT /product="peroxisome proliferator-activated receptor gamma
FT 1"
FT /db_xref="GOA:Q6TQE4"
FT /db_xref="InterPro:IPR000536"
FT /db_xref="InterPro:IPR001723"
FT /db_xref="InterPro:IPR003074"
FT /db_xref="InterPro:IPR035500"
FT /db_xref="UniProtKB/TrEMBL:Q6TQE4"
FT /protein_id="AAQ89992.1"
FT /translation="PFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSV
FT EAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMT
FT REFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIED
FT IQDNLLQALELQLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHP
FT LLQEIYKDLY"
FT exon 2262..2712
FT /gene="Pparg"
FT /number=6
FT gap 2713..2812
FT /estimated_length=unknown
FT exon 2813..3150
FT /gene="Pparg"
FT /number=7
XX
SQ Sequence 3150 BP; 796 A; 633 C; 703 G; 618 T; 400 other;
ggctacttac ttactacata cttcatacat acatacttct cacttagtgt gggatgctga 60
tgacccaagt caacatggcc acttaatgac aggcatggaa atggagtctt tgcatggtta 120
gtaacatggc ctttagagtc cctatatgaa cctgacctgt gtcttattat ttgaagactt 180
aagagtggaa ggatgctggg cagtggtggc acatgccttt aatcccagcc cttgggaggc 240
agaggcagga ggatttctga gtttgaggcc agcctggtct acaaagtgag ttccaggaca 300
gccagggcta cacagagaaa ctgtgtctca aaaaaccaaa aaaaaaaaaa aaatgtggaa 360
ggacatgaat ctgttgattc aagctctgaa ctttctttat aatgtcatac tcacaaatgt 420
ctggtgagga tggtttgtac cagaagaata aagaattccc tacctcccaa cagataagga 480
tgctaagagt ggagaagcat cgtgagcaag aagcataatt ataaatttcc agaggccagt 540
gcctcctaaa ggagagcaaa acatagagca aggtcttcat cattacgatt ggaaaaggat 600
aaaagaacgg cctttggtgt cctggacact gtaagctttc tgaatgtgaa tctttaggac 660
agatcatgac tgtgagagct gaaagagtgc aagaaaagga actgtctatc atgtgggctt 720
caggctcccg aggcaagaag ctccaatagt ctacttaaaa acaagagatt ctcaggccct 780
ctccacccta tgtgtaaggt ctcctatgta agaaatggtg ctaaagaatt ttaaaaagcc 840
agtgaacaag gttaacaaat agtttgaagg caggagagat tgctcagcgg ttaggaacac 900
tttgtgttcg tccagaggac ctttgttcgg ttcccagcac caaccacctg taactccagc 960
tccaggggag cccacacctc tccctccgtt cacgtgcata cacacacaat tgttttttaa 1020
aaggaaatta aatgattagc actaaagtct gttgattaag gcattcgcct tcataacatt 1080
ctgagattaa aaataaaaat aaaacagatt aaaaataaaa aaaaagaaaa aagggagatc 1140
ctaaatacac ttaattcata taaatatata tatgggtgtg tatctattat atatcatata 1200
tatgatatat aaatatatgt tatgcatgat atataaatat atatggtata tatatatata 1260
tagagagaga gatgaaaagc acatctagga aaaaaacaaa cttccccatg acagacatgg 1320
acatggacat cggtctgagg gacacgggac cttcctgggt cgcctcccag cggctgtgag 1380
gagcaaggcg gccaggtaac cagcgcacgg cgccgggcgc gggagggcca cgcgggcctc 1440
gtgggcgccg gcctccgggt gcgggcgcgg ggcctccnnn nnnnnnnnnn nnnnnnnnnn 1500
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1560
nnnnnnnnnn nnnnnnnggc ctcaccctgg gcaccgcccc cggtccggcc gggtggctcg 1620
gctcggctcc tctggtccgc ggcgggccag gcggggcccg tcgcactcag agcggcagcc 1680
gcctggggcg ctcgggtcgg gtcggcctca ccgacgcaca gcacccgcca agccgccgcc 1740
tcaggtcaga gtcgccccgg gccacgcggc ccgccggagg gacgcggaag aagagacctg 1800
gggcgctgcg ctggggtatt gggtcgcgcg cagcctgagg ggaccgagtg tgacgacaag 1860
gtgaccgggc tgaggggacg ggctgaggag aagtcactct ctgacaggag cctgtgagac 1920
cgacagcctg acggggtctc ggttgagggg acgcgggctg agaaatcacg ttctgacaga 1980
actgtgtgac agacaagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2040
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnatt 2100
tgaaagaagc ggtgaaccac tgatattcag gacattttaa aaacaagact accctttact 2160
gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2220
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nccatttgtc atctacgaca 2280
tgaattcctt aatgatggga gaagataaaa tcaagttcaa acatatcacc cccctgcagg 2340
agcagagcaa agaagtggcc atccgaattt ttcaagggtg ccagtttcga tccgtagaag 2400
ctgtgcaaga gatcacagag tatgccaaaa atatccccgg tttcattaac cttgacttga 2460
atgaccaagt gactctgctc aagtatggtg tccatgagat catctacacg atgctggcct 2520
ccctgatgaa taaagatgga gtcctcatct cagagggcca aggattcatg accagggagt 2580
tcctcaaaag cctgcggaag ccctttggtg actttatgga gcctaagttt gagtttgctg 2640
tgaagttcaa tgcactggaa ttagatgaca gtgatttggc tatatttata gctgtcatta 2700
ttctcagtgg agnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2760
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaccgccca 2820
ggcttgctga acgtgaagcc catcgaggac atccaagaca acctgctgca ggccctggaa 2880
ctgcagctca agctgaacca cccagagtcc tctcagctgt tcgccaaggt gctccagaag 2940
atgacagacc tcaggcagat cgtcacagag cacgtgcagc tactgcatgt gatcaagaag 3000
acagagacag acatgagcct tcaccccctg ctccaggaga tctacaagga cttgtattag 3060
caggaaagtc ccacccgctg acaacgtgtt ccttctattg attgcactat tattttgagg 3120
gaaaaaaatc tgacacctaa gaaatttact 3150
//
