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EBI Dbfetch

ID   AY207049; SV 1; linear; genomic DNA; STD; MUS; 5804 BP.
XX
AC   AY207049;
XX
DT   28-AUG-2003 (Rel. 77, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Mus musculus postsynaptic density-95 gene, exons 2 through 8 and partial
DE   cds; alternatively spliced.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-5804
RX   DOI; 10.1016/j.molbrainres.2004.09.024.
RX   PUBMED; 15661374.
RA   Bence M., Arbuckle M.I., Dickson K.S., Grant S.G.;
RT   "Analyses of murine postsynaptic density-95 identify novel isoforms and
RT   potential translational control elements";
RL   Brain Res. Mol. Brain Res. 133(1):143-152(2005).
XX
RN   [2]
RP   1-5804
RA   Bence M., Arbuckle M.I., Grant S.G.N.;
RT   ;
RL   Submitted (17-DEC-2002) to the INSDC.
RL   Neuroscience, University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ,
RL   UK
XX
DR   MD5; 4fa388fd14656ac077f6260bef1b9624.
DR   Ensembl-Gn; ENSMUSG00000020886; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000018700; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000108589; mus_musculus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5804
FT                   /organism="Mus musculus"
FT                   /strain="129/SvEvTacfBr"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:10090"
FT   mRNA            join(AY207048.1:2701..2773,AY207048.1:2962..3060,
FT                   AY207048.1:3326..3366,1..66,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /product="PSD-95 beta"
FT                   /note="alternatively spliced"
FT   CDS             join(AY207048.1:2755..2773,AY207048.1:2962..3060,
FT                   AY207048.1:3326..3366,1..66,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /codon_start=1
FT                   /product="PSD-95 beta"
FT                   /note="alternatively spliced"
FT                   /db_xref="InterPro:IPR001478"
FT                   /db_xref="InterPro:IPR015143"
FT                   /db_xref="InterPro:IPR016313"
FT                   /db_xref="InterPro:IPR019590"
FT                   /db_xref="UniProtKB/TrEMBL:Q6XVF6"
FT                   /protein_id="AAQ56707.1"
FT                   /translation="MSQRPRAPRSALWLLAPPLLRWAPPLLTVLHSDLFQALLDILDYY
FT                   EACISESQKYRYQDEDTPPLEHSPAHLPNQANSPPVIVNTDTLEAPGYELQVNGTEGEM
FT                   EYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV
FT                   NEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKIIEIKLIKGPKGLGFSIAGGVG
FT                   NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV
FT                   VYLKVAKPSNAYLSDSYAPPDITT"
FT   mRNA            join(AY207048.1:2776..2915,AY207048.1:3326..3366,1..66,
FT                   3477..3530,3673..3732,3945..4069,4167..4336,4433..4569,
FT                   4723..>4867)
FT                   /product="PSD-95 gamma"
FT                   /note="alternatively spliced"
FT   mRNA            join(AY207048.1:4031..4488,1..165,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /product="PSD-95 alpha 2b"
FT                   /note="alternatively spliced"
FT   mRNA            join(AY207048.1:4031..4488,1..66,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /product="PSD-95 alpha"
FT                   /note="alternatively spliced"
FT   CDS             join(AY207048.1:4459..4488,1..165,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /codon_start=1
FT                   /product="PSD-95 alpha 2b"
FT                   /note="PSD-95 alpha (2b); alternatively spliced"
FT                   /db_xref="InterPro:IPR001478"
FT                   /db_xref="InterPro:IPR016313"
FT                   /db_xref="InterPro:IPR019590"
FT                   /db_xref="UniProtKB/TrEMBL:Q6XVF5"
FT                   /protein_id="AAQ56706.1"
FT                   /translation="MDCLCIVTTKKYRYQDEDTPPLEHSPAHLPNQVNAPXLVHVAERN
FT                   LSHLXAVHGVVGHAHLSSLKANSPPVIVNTDTLEAPGYELQVNGTEGEMEYEEITLERG
FT                   NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH
FT                   SAAVEALKEAGSIVRLYVMRRKPPAEKIIEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI
FT                   YVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN
FT                   AYLSDSYAPPDITT"
FT   CDS             join(AY207048.1:4459..4488,1..66,3477..3530,3673..3732,
FT                   3945..4069,4167..4336,4433..4569,4723..>4867)
FT                   /codon_start=1
FT                   /product="PSD-95 alpha"
FT                   /note="alternatively spliced"
FT                   /db_xref="GOA:Q6XVF4"
FT                   /db_xref="InterPro:IPR001478"
FT                   /db_xref="InterPro:IPR016313"
FT                   /db_xref="InterPro:IPR019590"
FT                   /db_xref="UniProtKB/TrEMBL:Q6XVF4"
FT                   /protein_id="AAQ56705.1"
FT                   /translation="MDCLCIVTTKKYRYQDEDTPPLEHSPAHLPNQANSPPVIVNTDTL
FT                   EAPGYELQVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGA
FT                   AAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKIIEIKL
FT                   IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED
FT                   VMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITT"
FT   exon            1..165
FT                   /number=2b
FT   exon            1..66
FT                   /number=2
FT   exon            3477..3530
FT                   /number=3
FT   exon            3673..3732
FT                   /number=4
FT   exon            3945..4069
FT                   /number=5
FT   exon            4167..4336
FT                   /number=6
FT   exon            4433..4569
FT                   /number=7
FT   exon            4723..4867
FT                   /number=8
XX
SQ   Sequence 5804 BP; 1253 A; 1476 C; 1713 G; 1335 T; 27 other;
     aaataccgct accaagatga agacacgccc cctctggaac acagcccggc ccacctcccc        60
     aaccaggtaa acgcccccna gctggtgcac gtggcggaga ggaacttgtc ccacctcnag       120
     gccgtccacg gggtcgtggg ccacgcccac ctctcctccc tcaaggtagg agaccctggc       180
     ggccccctcc ccagtgcggc cctcggagcc tcgganctgc ancaatcccc caagggccgg       240
     tagggcaaga gatatggggg aaaagatggg gtggcctggc atcagggcct tggactcctg       300
     gggttgggat gggggtgggg gtgtatactt ctggattggg gatggggcta gactctggaa       360
     acactttggt ctcgcagaag agaaatnggc caggcaagtg ggagtgggct cggaacctaa       420
     ngccagacag aacgtatgct tttgcgtatg tttggtgtgt taaaaggatg gatggatccc       480
     ccaagaagtg cccccaatgc cagggcgccg ctcgtcattc ctccacaccc ccancgcccg       540
     cttcagtttt ctgtgtccag agctctgttc caagcttctg gtgccctcat ttgctcctgt       600
     ccctttcccc atctcctccc ccaacctccg cctctgggcc tggctctgcc tgttcccgag       660
     tctccagctc tttccatctg gctggactga gacttcaagt cttggtcctt tctgcctctt       720
     cctgtgcccc agtctttgct cccctcctgt gcaccccccc cccctcgctg gctggctggg       780
     gctggctggc tggttcttga tgctgtctct ctcttcctcc cacgcatgca tctccttccc       840
     cctctcactg atcctcagct caggcctctg tggcctgatc aatcctcttc tggtttttgt       900
     cagtcagtcc tccctgtctg tcctccctgt ctgtcctcca gctccctgtt tctttcccag       960
     tttcccgttt gtctcttgtc cttttgcttc ctgcgggcct cacctccatc cacacctttt      1020
     cctggcatcc cggcatcatt attatatatg cccacctgtt tgttcccttt cccctcctcc      1080
     tttgtgcttg cactgtggtc ctctccccgc cccccccccc ctactccgga gaggcctttt      1140
     atctcctagc ccaacttctc acagtctctt ctttcagtga cacaagctgt gagactgagg      1200
     aggatactgg ggggtggggg gggcagaagc ataggatgct ctaggaaggg ggaccccagt      1260
     tgctgatatt tcactaagaa gatggggggc agtgcttgtg agccagggga tgaggcagga      1320
     cattggctaa gggaggggtt ggaggaaagt gggaagggca agggtcttgt agcatggagg      1380
     gccasattgt ggaattgggg ctgcttgaga ccaaggaaaa tgaagtgcag gggctgggag      1440
     ccatggagaa tatttgcgtg caaactcccg gcctcaggaa gttaaagaag attccagatg      1500
     tctttgcaag atggggccat tatgtcttgg gtcgggaggg gaacgaggct cttgaggggt      1560
     agtggtacta cagtgctggg gagtgtggta tcagagttca aggagtgtct ggaagagtgc      1620
     cagaggaagc ctcaggtcag ggcttccgcc aagggatggg agatgcccca atatccacag      1680
     aaaacgggga gtgggttgaa ggtggaggac tgagactggg ggatagacct ttaaggggtc      1740
     caggatgagg taaagaagaa cgaggctctt tctttagaga ggtggcaggt gaggatagga      1800
     gatgctgggg gtgggaggga cagagntgaa ggctggtacg gagacaggga aggggtggag      1860
     aatggcgtcg gggttgggag attttggaaa actgaaggct gaggacaagg atccagggag      1920
     ggtgtggggt gagaggagag acaaagacta gttagggagg gactggcggg gtgtggagag      1980
     aggttgtagg ataaggaggg tcggaggctg tgtgccacgg agggtgagat tgtggatgac      2040
     ttcagcagcc agtgactatt ggctagacaa cagcgcttcc ttgaggagaa aatgacagtt      2100
     gattcatggg tatggaatct attatggggc ctgaaatggn tgggagtttn tgggcttgag      2160
     aaatagcagt aagagagaag agagaccttg gtaggagagg gagaacctag gaagggactg      2220
     ggaatcctca cgnttggtcg gtttcaaata tttgtctaag gaggaaatag attggggacc      2280
     cccggaagga gtctcttggc agcctcacct cattgccata gagacgtggc ttcggttgcc      2340
     ctggcaattg gggaagcccc taggacaatt ctaaagctgg ccccgccctg cagtttagnt      2400
     agagaccagg ntgggntgcg ttgaggccac tgacgtcagg gaccagggca cgcctcgctt      2460
     taaccctttc cttaatgaca tgggggcagg gaggagggga ggcagtagag gagcaggnta      2520
     ggttctggat gctttttaca ttcctccttc ctgatgttct ttgcactgca tagggtgagg      2580
     ggctccaagc agagaggaag gcaggtttat tcaggatgca ctgcgcccac gcccacgaat      2640
     agaatcctcc tggcctcatg ggctggntag cggtaggcgg gtctagagcc tgagagatgg      2700
     gactcatcga gtcctttgct ctagggagtc tgtcgaaccc taggccacgc ccccacccgt      2760
     tgtcctgact accaggcctc ctggaggtgg gtctccccag gtcttggctg gtcttagata      2820
     ctgttgctag gcaacctggt ccctggagga aggggtggat tggatggcgg gtgggtgaga      2880
     gagagggagg gaccagaagc tggggaaacc ccggattctc atggcgcaag atttagagca      2940
     aatgtatgcc aaggtgaggg acaaatttgg ggaagggtta tcaagatatt tggatgattg      3000
     tgaagatata gagacaggaa aagggccaca aaggggagag cagggctagt gggcctgaac      3060
     tctggggtgt aatgcgtagc acgtaatgca tgtaacaccc tgtagtgtta catccggtga      3120
     gaagcatccc cccccagcat gcccccccct ttcccactct ttaccatctg ctgttcccct      3180
     ctccgtctgg ctgtctctct cttccctttt cttatacctc cttaaacata caggggcctg      3240
     gggtgggcaa agttgtctct gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtactcgagc      3300
     atgcatgttt gtgtgatgta gactgaggtt gggcccttga gttgctctgc aggtggcaga      3360
     gtgggtttga ctacgtagct aaaaagggga tccagattgg taggacccac ctttggtnca      3420
     gactcccttt ggagtccaga ctgaggcagc cttttgtctt ctgtctcctc tcacaggcca      3480
     attctccccc tgtgattgtc aacacggaca ccctagaagc cccaggatat gtgagttgtt      3540
     tagattttgg cactggggcc atagcagtag ggtctgagag gcggagggag tgaatcccta      3600
     tgtggggagg gaggggcacg gtctctggtc agaatgcttg tcttactgtt cttgtgtttc      3660
     tgccccgtgc tggagttgca ggtgaacgga acagaggggg agatggagta tgaggagatc      3720
     acattggaaa gggtgagtgc cagcccccct cccccaagcc accctcatgt cccttggccc      3780
     ggactggtgt ttctctttnt gngcntgtgt ttcctagatg tccagactct taactgtccg      3840
     tgtgcgttct agtcgcactt ctcgaacctg tctcattccc gtttcccttt gacggaatta      3900
     ggcggtaagg ggacctgacc ttcttaccct ctttttttcc ccagggtaac tcaggtctgg      3960
     gcttcagcat cgcaggtggc accgacaacc cacacatcgg tgacgaccca tccatcttta      4020
     tcaccaagat cattcctggt ggggctgcag cccaggatgg ccgcctcagg tggggagaga      4080
     agacggcatt gagagaactg gtaccctgga aagggagggc tgggcagtgg gaagctcccg      4140
     gctcaggccc acgctgctgt tcccagggtc aacgacagca tcctgtttgt caatgaagtg      4200
     gatgtccggg aggtgaccca ttcagctgca gtggaggccc tcaaagaggc gggttccatc      4260
     gttcgcctct acgtcatgcg ccggaaaccc ccagctgaga agatcataga gatcaagctt      4320
     atcaaagggc ctaaaggtag tactcgttca atcaccccac gtctcgtctc cccacntcca      4380
     gggcccgctc cccaggcccg tgacagccat ctctcctctc cctcccatcc aggacttggc      4440
     ttcagcatcg cagggggcgt tgggaaccag cacatccctg gagataatag catctacgta      4500
     accaagatca tcgaaggagg cgctgcccac aaggatggca ggttgcagat cggagacaag      4560
     atcctggcgg tgaggacctc aaccaggggt atggcccaga ctcagggctc cctttgtagg      4620
     cctgggaccc tcaccgcatg accgtgaccg tgcctgtctg ccaaggtcca tctctggctc      4680
     tgtctaagct ttgcttccct tgacccctcc cctccccccc aggtcaacag tgtggggcta      4740
     gaggatgtca tgcatgagga cgccgtggca gccctgaaga acacatatga cgttgtgtac      4800
     ctaaaggtgg ccaagcccag caatgcctac ctgagtgaca gctatgctcc cccagacatc      4860
     acaacctgtg agagccctcc aaacctcaaa gctcctcctg acccacccta gtaattccta      4920
     agacctgcag tcccntgaca gcacctcggg cctatttcca tggaatgact gtcacttctg      4980
     acccttgtgg tggttgggga gaaggtggaa aatcgatcct ggagaagcag tagaaaggat      5040
     cactgatctt ctgtccctgg gacacaggct cacgtggctt tatggttccg atcaaatcct      5100
     caagtatacg ataattctca cattctttaa aagtgtagta attgagccgg gcagtggtgg      5160
     cacatgcctt taactccagc actggagagg cagaggcagg cagatctctt gagcctgagg      5220
     ctagcctgat ctacaaaacc agttccagga cagccagggc tacataggga aaaaccttgt      5280
     ctctctacct tcccccaccc ccaaccccag caattgtcgg aaaagaactg gatgtgatgg      5340
     gataaacctg cttttctaga actcggaagg tagaggcagg aaggtcggga gttcaggtct      5400
     atcctgggct acatagcaag tttgaggcca gcctgggcta cttgagactc tgagaaaatg      5460
     gggggaaaag gatgagagga caaaagcttc acctttataa ggacaattga catggttgtg      5520
     aaaacattgt ataagaagga gcacagaggc cagctgtctc ctggaacaga caggcttacg      5580
     tttagaacac cccatttngg tncccacaca cggcagctca ntncgaggaa aacactgtca      5640
     cagaataagg tttgtttgag gaacaccaaa actgaaaacc tcttgagatg attcaatata      5700
     ttaagaagtg agaaggaagg ttgtggtggc tcacatctct aatcccagca ttctggagcc      5760
     agaggcagga ggattggatg ttccaggcta gcctgagcta caca                       5804
//


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