Dbfetch
ID AK316333; SV 1; linear; mRNA; STD; HUM; 1209 BP. XX AC AK316333; XX DT 23-JAN-2009 (Rel. 99, Created) DT 23-JAN-2009 (Rel. 99, Last updated, Version 1) XX DE Homo sapiens cDNA, FLJ79232 complete cds, highly similar to HLA class II DE histocompatibility antigen, DQB1*0602 beta chain precursor. XX KW FLI_CDNA; oligo capping. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-1209 RA Isogai T., Yamamoto J.; RT ; RL Submitted (11-JAN-2008) to the INSDC. RL Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 RL Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com XX RN [2] RA Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., RA Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., RA Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T., RA Sugano S., Nomura N., Isogai T.; RT "NEDO human cDNA sequencing project"; RL Unpublished. XX DR MD5; 300cd4e310d932e4fa0cf0353b2b39e9. DR Ensembl-Gn; ENSG00000179344; homo_sapiens. DR Ensembl-Tr; ENST00000399084; homo_sapiens. DR Ensembl-Tr; ENST00000434651; homo_sapiens. XX CC Human cDNA sequencing project focused on splicing variants of mRNA CC in NEDO functional analysis of protein and research application CC project supported by Ministry of Economy, Trade and Industry, CC Japan; cDNA selection for complete cds sequencing: Reverse CC Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan CC (Hitachi) and Japan Biological Informatics Consortium, Japan CC (JBIC); cDNA complete cds sequencing: JBIC; cDNA library CC construction: Helix Research Institute supported by Japan Key CC Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: CC Research Association for Biotechnology, Japan, Biotechnology CC Center, National Institute of Technology and Evaluation, Japan and CC HRI; cDNA mapping to human genome: Central Research Laboratory, CC Hitachi; evaluation and annotation: REPRORI. XX FH Key Location/Qualifiers FH FT source 1..1209 FT /organism="Homo sapiens" FT /mol_type="mRNA" FT /clone_lib="SPLEN2" FT /clone="SPLEN2024407" FT /tissue_type="spleen" FT /note="cloning vector: pME18SFL3" FT /db_xref="taxon:9606" FT CDS 75..860 FT /codon_start=1 FT /transl_table=1 FT /note="highly similar to HLA class II histocompatibility FT antigen, DQB1*0602 beta chain precursor" FT /db_xref="GOA:Q5Y7D6" FT /db_xref="H-InvDB:HIT000499946.4" FT /db_xref="HGNC:HGNC:4944" FT /db_xref="InterPro:IPR000353" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR014745" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q5Y7D6" FT /protein_id="BAH14704.1" FT /translation="MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKG FT MCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTR FT AELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRW FT FRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRA FT QSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKGLLH" XX SQ Sequence 1209 BP; 248 A; 340 C; 334 G; 287 T; 0 other; ctttctgcca ggtacatcag atccatcagg tccgagctgt gttgactacc actgcttttc 60 ccttcgtctc agttatgtct tggaagaagg ctttgcggat ccccggagac cttcgggtag 120 caactgtcac cttgatgctg gcgatgctga gctccctact ggctgagggc agagactctc 180 ccgaggattt cgtgttccag tttaagggca tgtgctactt caccaacggg acggagcgcg 240 tgcgtcttgt gaccagatac atctataacc gagaggagta cgcgcgcttc gacagcgacg 300 tgggggtgta ccgcgcggtg acgccgcagg ggcggcctga tgccgagtac tggaacagcc 360 agaaggaagt cctggagggg acccgggcgg agttggacac ggtgtgcaga cacaactacg 420 aggtggcgtt ccgcgggatc ttgcagagga gagtggagcc cacagtgacc atctccccat 480 ccaggacaga ggccctcaac caccacaacc tgctggtctg ctcggtgaca gatttctatc 540 caggccagat caaagtccgg tggtttcgga atgatcagga ggagacagcc ggcgttgtgt 600 ccacccccct tattaggaat ggtgactgga ctttccagat cctggtgatg ctggaaatga 660 ctccccagcg tggagatgtc tacacctgcc acgtggagca ccccagcctc cagagcccca 720 tcaccgtgga gtggcgggct cagtctgaat ctgcccagag caagatgctg agtggcgttg 780 gaggcttcgt gctggggctg atcttccttg ggctgggcct tatcatccgt caaaggagtc 840 agaaagggct tctgcactga ctcctgagac tattttaact aggattggtt atcactcttc 900 tgtgatgcct gcttatgcct gcccagaatt cccagctgcc tgtgtcagct tgtccccctg 960 agatcaaagt cctacagtgg ctgtcacgca gccaccaggt catctccttt catccccacc 1020 ccaaggcgct ggctgtgact ctgcttcctg cactgaccca gagcctctgc ctgtgcatgg 1080 ccagctgcgt ctactcaggt cccaaggggt ttctgtttct attctttcct cagactgctc 1140 aagagaagca catgaaaaac attacctgac tttagagctt ttttacataa ttaaacatga 1200 tcctgagtt 1209 //