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EBI Dbfetch

ID   AK172393; SV 1; linear; mRNA; HTC; MUS; 1341 BP.
XX
AC   AK172393;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 9)
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DE   Mus musculus activated spleen cDNA, RIKEN full-length enriched library,
DE   clone:F830206B04 product:interleukin 4 induced 1, full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1341
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 92f2157a9d847856eda62eb9cd1cefb9.
DR   Ensembl-Gn; ENSMUSG00000074141; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000033015; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC   Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC   Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=F830206B04
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FH   Key             Location/Qualifiers
FH
FT   source          1..1341
FT                   /organism="Mus musculus"
FT                   /strain="NOD"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="F830206B04"
FT                   /tissue_type="activated spleen"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..1245
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="interleukin 4 induced 1 (MGD|MGI:109552
FT                   GB|NM_010215, evidence: BLASTN, 99%, match=1341)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="GOA:O09046"
FT                   /db_xref="InterPro:IPR001613"
FT                   /db_xref="InterPro:IPR002937"
FT                   /db_xref="MGI:MGI:109552"
FT                   /db_xref="PDB:2I8W"
FT                   /db_xref="UniProtKB/Swiss-Prot:O09046"
FT                   /protein_id="BAE42981.1"
FT                   /translation="EGNLSRPAVQLLGDVMSEEGFFYLSFAEALRAHACLSDRLRYSRI
FT                   VGGWDLLPRALLSSLSGALLLNAPVVSITQGRNDVRVHIATSLHSEKTLTADVVLLTAS
FT                   GPALQRITFSPPLTRKRQEALRALHYVAASKVFLSFRRPFWHEEHIEGGHSNTDRPSRL
FT                   IFYPAQGEGSLLLASYTWSDAAAPFAGLSTDQTLRLVLQDVAALHGPVVFRLWDGRGVV
FT                   KRWAEDPHSQGGFVVQPPLYGREAEDYDWSAPFGRIYFAGEHTALPHGWVETAVKSGLR
FT                   AAVRINNNYGYGEVDPQMMEHAYAEANYLDQYPEGERPEEQQAREEVSPDEQEPSHKHL
FT                   LVETSPEGQQHAFVEAIPELQGHVFVETVPQEKGHAHQNIYPSEHVQVHGEVIPEWHGH
FT                   GGSGTPQMHRVGDHS"
FT   polyA_signal    1324..1329
FT                   /note="putative"
FT   polyA_site      1341
FT                   /note="putative"
XX
SQ   Sequence 1341 BP; 267 A; 400 C; 426 G; 248 T; 0 other;
     gagggcaacc tgtcccggcc ggctgtgcag ctcctgggag atgtgatgtc cgaggagggc        60
     ttcttctacc tcagctttgc agaagcctta cgtgcgcacg cctgcctgag cgatagactc       120
     cggtacagcc gcatcgtagg tggctgggac ctgcttccgc gagctctgct gagctcactg       180
     tccggggcgc tgctactgaa cgcgcctgtg gtgtcgatca ctcaggggag gaacgatgtg       240
     cgcgtgcaca ttgccacctc gcttcacagc gagaagacgc tgacagccga cgtggtgctg       300
     ctgactgcca gtggacccgc gctgcagcgc attaccttct cgccgccctt gactcgcaag       360
     aggcaggagg cactgcgcgc gcttcactac gtagcagcca gcaaggtttt tctgagtttc       420
     cgtcggccct tctggcacga ggagcacatc gagggcggcc actccaacac tgaccgccca       480
     tcgcgcctca tattctatcc cgcgcagggc gagggctcac tgcttctggc ctcctacacg       540
     tggtcggacg ctgcagcccc cttcgctgga ctgagcaccg accagaccct gcgtttggtg       600
     ctccaggacg tggcggccct gcacgggcct gtggtgttcc ggctgtggga cggcaggggt       660
     gtggtcaagc gctgggcaga ggacccgcat agccagggag gcttcgtggt gcagccgcca       720
     ttgtacgggc gcgaggctga ggactatgac tggtcagccc ccttcggccg catttacttc       780
     gcgggcgagc acacagctct cccgcatggc tgggtagaga ccgctgtcaa gtccgggttg       840
     cgggccgcgg tgagaatcaa taataactat gggtacgggg aggtcgaccc ccagatgatg       900
     gagcatgcat atgcagaggc caactatctg gaccagtatc ctgaagggga gaggcccgag       960
     gagcagcagg cgcgggaaga agtcagccca gatgaacagg agccctctca caaacacttg      1020
     ttggtggaaa cgagccccga ggggcagcaa cacgcgtttg tggaggccat tcccgagctg      1080
     cagggacacg tgttcgtgga gactgtcccc caggagaagg ggcacgccca ccagaatata      1140
     tatccttcgg agcatgtaca ggtgcatggg gaagtcatcc ctgagtggca tggtcatggg      1200
     ggatctggca ccccgcaaat gcaccgagtg ggggaccact cctaatcgca aagaggaagt      1260
     gagcacccag ctcctaagcc agccctcttc agggcagaca gaccacctac actaatagcc      1320
     cacaataaag ttatttttgt t                                                1341
//


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