Dbfetch
ID AK171417; SV 1; linear; mRNA; HTC; MUS; 1290 BP. XX AC AK171417; XX DT 09-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length DE enriched library, clone:F730211I08 product:arginase 1, liver, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1290 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 1b1c9f2501bdc0ecfd72a9ecd4575ae3. DR Ensembl-Gn; ENSMUSG00000019987; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0017096; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0017073; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0017033; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0017036; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0016856; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0017494; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0016435; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0016830; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0016935; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0016930; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0017012; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0016960; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0017530; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0016217; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0016498; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000020161; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0024831; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0024799; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0024762; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0024770; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0024574; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0025279; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0024118; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0024512; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0024629; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0024629; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0024747; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0024623; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0025315; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0023836; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0024131; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F730211I08 XX FH Key Location/Qualifiers FH FT source 1..1290 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F730211I08" FT /cell_type="B6-derived CD11 +ve dendritic cells" FT /db_xref="taxon:10090" FT CDS <1..908 FT /codon_start=3 FT /transl_table=1 FT /note="arginase 1, liver (MGD|MGI:88070 GB|NM_007482, FT evidence: BLASTN, 99%, match=1290)" FT /note="putative" FT /note="start codon is not identified" FT /db_xref="GOA:Q61176" FT /db_xref="InterPro:IPR006035" FT /db_xref="InterPro:IPR014033" FT /db_xref="InterPro:IPR020855" FT /db_xref="InterPro:IPR023696" FT /db_xref="MGI:MGI:88070" FT /db_xref="UniProtKB/Swiss-Prot:Q61176" FT /protein_id="BAE42440.1" FT /translation="GVEKGPAALRKAGLLEKLKETEYDVRDHGDLAFVDVPNDSSFQIV FT KNPRSVGKANEELAGVVAEVQKNGRVSVVLGGDHSLAVGSISGHARVHPDLCVIWVDAH FT TDINTPLTTSSGNLHGQPVSFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPG FT EHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPAFTPAT FT GTPVLGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTAEEVKSTVNTAVALTLAC FT FGTQREGNHKPGTDYLKPPK" FT regulatory 1277..1282 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1290 FT /note="putative" XX SQ Sequence 1290 BP; 386 A; 282 C; 323 G; 299 T; 0 other; gaggggtaga gaaaggccct gcagcactga ggaaagctgg tctgctggaa aaacttaaag 60 aaacagagta tgacgtgaga gaccacgggg acctggcctt tgttgatgtc cctaatgaca 120 gctcctttca aattgtgaag aacccacggt ctgtggggaa agccaatgaa gagctggctg 180 gtgtggtggc agaggtccag aagaatggaa gagtcagtgt ggtgctgggt ggagaccaca 240 gtctggcagt tggaagcatc tctggccacg ccagggtcca ccctgaccta tgtgtcattt 300 gggtggatgc tcacactgac atcaacactc ccctgacaac cagctctggg aatctgcatg 360 ggcaacctgt gtcctttctc ctgaaggaac tgaaaggaaa gttcccagat gtaccaggat 420 tctcctgggt gactccctgc atatctgcca aagacatcgt gtacattggc ttgcgagacg 480 tagaccctgg ggaacactat ataataaaaa ctctgggaat taagtatttc tccatgactg 540 aagtagacaa gctggggatt ggcaaggtga tggaagagac cttcagctac ctgctgggaa 600 ggaagaaaag gccgattcac ctgagctttg atgtcgacgg gctggaccca gcattcaccc 660 cggcgaccgg caccccggtt ctgggaggcc tatcttacag agaaggtctc tacatcacag 720 aagaaattta caagacaggg ctcctttcag gactagatat catggaagtg aacccaactc 780 ttgggaagac agcagaggag gtgaagagta ctgtgaacac ggcagtggct ttaaccttgg 840 cttgcttcgg aactcaacgg gagggtaacc ataagccagg gactgactac cttaaaccac 900 ctaagtgact gtgaatgcgc cacatgaaaa ccatctgggg catcacagca aagcagacag 960 aactaagcaa acgccttctc ctcccaaggg cttgttcttt tagaaaaaaa aaaaattttt 1020 tttccagtaa gtatgtatcc cagcagttcc tttctggtat gaaattcagg atgtggaaat 1080 caaaacagct ataaaactag gaaacatgta ttccccattt tagcataagt tatccttaag 1140 aagtagtatc caattaattt tcaattaaaa aatgcaccag catttaaaat acacggtgat 1200 gttaagtgtc aattcacagt tggaagcaaa ggtatccaga gaggtagcct atatccacgc 1260 tgttcaaaag atgtataata aactctttat 1290 //