ID AK171417; SV 1; linear; mRNA; HTC; MUS; 1290 BP.
XX
AC AK171417;
XX
DT 09-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 10)
XX
DE Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length
DE enriched library, clone:F730211I08 product:arginase 1, liver, full insert
DE sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-1290
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (14-APR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 1b1c9f2501bdc0ecfd72a9ecd4575ae3.
DR Ensembl-Gn; ENSMUSG00000019987; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0017096; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0017073; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0017033; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0017036; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0016856; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0017494; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0016435; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0016830; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0016935; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0016930; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0017012; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0016960; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0017530; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0016217; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0016498; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000020161; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0024831; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0024799; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0024762; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0024770; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0024574; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0025279; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0024118; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0024512; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0024629; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0024629; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0024747; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0024623; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0025315; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0023836; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0024131; mus_musculus_wsbeij.
XX
CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC assistance we gratefully acknowledge.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=F730211I08
XX
FH Key Location/Qualifiers
FH
FT source 1..1290
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="F730211I08"
FT /cell_type="B6-derived CD11 +ve dendritic cells"
FT /db_xref="taxon:10090"
FT CDS <1..908
FT /codon_start=3
FT /transl_table=1
FT /note="arginase 1, liver (MGD|MGI:88070 GB|NM_007482,
FT evidence: BLASTN, 99%, match=1290)"
FT /note="putative"
FT /note="start codon is not identified"
FT /db_xref="GOA:Q61176"
FT /db_xref="InterPro:IPR006035"
FT /db_xref="InterPro:IPR014033"
FT /db_xref="InterPro:IPR020855"
FT /db_xref="InterPro:IPR023696"
FT /db_xref="MGI:MGI:88070"
FT /db_xref="UniProtKB/Swiss-Prot:Q61176"
FT /protein_id="BAE42440.1"
FT /translation="GVEKGPAALRKAGLLEKLKETEYDVRDHGDLAFVDVPNDSSFQIV
FT KNPRSVGKANEELAGVVAEVQKNGRVSVVLGGDHSLAVGSISGHARVHPDLCVIWVDAH
FT TDINTPLTTSSGNLHGQPVSFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPG
FT EHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPAFTPAT
FT GTPVLGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTAEEVKSTVNTAVALTLAC
FT FGTQREGNHKPGTDYLKPPK"
FT regulatory 1277..1282
FT /note="putative"
FT /regulatory_class="polyA_signal_sequence"
FT polyA_site 1290
FT /note="putative"
XX
SQ Sequence 1290 BP; 386 A; 282 C; 323 G; 299 T; 0 other;
gaggggtaga gaaaggccct gcagcactga ggaaagctgg tctgctggaa aaacttaaag 60
aaacagagta tgacgtgaga gaccacgggg acctggcctt tgttgatgtc cctaatgaca 120
gctcctttca aattgtgaag aacccacggt ctgtggggaa agccaatgaa gagctggctg 180
gtgtggtggc agaggtccag aagaatggaa gagtcagtgt ggtgctgggt ggagaccaca 240
gtctggcagt tggaagcatc tctggccacg ccagggtcca ccctgaccta tgtgtcattt 300
gggtggatgc tcacactgac atcaacactc ccctgacaac cagctctggg aatctgcatg 360
ggcaacctgt gtcctttctc ctgaaggaac tgaaaggaaa gttcccagat gtaccaggat 420
tctcctgggt gactccctgc atatctgcca aagacatcgt gtacattggc ttgcgagacg 480
tagaccctgg ggaacactat ataataaaaa ctctgggaat taagtatttc tccatgactg 540
aagtagacaa gctggggatt ggcaaggtga tggaagagac cttcagctac ctgctgggaa 600
ggaagaaaag gccgattcac ctgagctttg atgtcgacgg gctggaccca gcattcaccc 660
cggcgaccgg caccccggtt ctgggaggcc tatcttacag agaaggtctc tacatcacag 720
aagaaattta caagacaggg ctcctttcag gactagatat catggaagtg aacccaactc 780
ttgggaagac agcagaggag gtgaagagta ctgtgaacac ggcagtggct ttaaccttgg 840
cttgcttcgg aactcaacgg gagggtaacc ataagccagg gactgactac cttaaaccac 900
ctaagtgact gtgaatgcgc cacatgaaaa ccatctgggg catcacagca aagcagacag 960
aactaagcaa acgccttctc ctcccaaggg cttgttcttt tagaaaaaaa aaaaattttt 1020
tttccagtaa gtatgtatcc cagcagttcc tttctggtat gaaattcagg atgtggaaat 1080
caaaacagct ataaaactag gaaacatgta ttccccattt tagcataagt tatccttaag 1140
aagtagtatc caattaattt tcaattaaaa aatgcaccag catttaaaat acacggtgat 1200
gttaagtgtc aattcacagt tggaagcaaa ggtatccaga gaggtagcct atatccacgc 1260
tgttcaaaag atgtataata aactctttat 1290
//