Dbfetch
ID AK170965; SV 1; linear; mRNA; HTC; MUS; 2312 BP. XX AC AK170965; XX DT 09-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length DE enriched library, clone:F630213P21 product:glycogen synthase kinase 3 beta, DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2312 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 5e5da0ed87f8c3248789728c21a9e945. DR Ensembl-Gn; ENSMUSG00000022812; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022808; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022773; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022745; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022774; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022538; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023221; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022064; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022509; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022641; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022616; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022709; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022635; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023236; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021804; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022108; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023507; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0044379; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0044354; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0044328; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0044330; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0044072; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0044811; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0044182; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0043986; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0044137; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0044092; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0044211; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0044071; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0044870; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0043765; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0043445; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F630213P21 XX FH Key Location/Qualifiers FH FT source 1..2312 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F630213P21" FT /cell_type="NOD-derived CD11c +ve dendritic cells" FT /db_xref="taxon:10090" FT CDS 973..2235 FT /codon_start=1 FT /transl_table=1 FT /note="glycogen synthase kinase 3 beta (MGD|MGI:1861437 FT GB|NM_019827, evidence: BLASTN, 99%, match=2294)" FT /note="putative" FT /db_xref="GOA:Q5KU03" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR008271" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR033573" FT /db_xref="InterPro:IPR039192" FT /db_xref="MGI:MGI:1861437" FT /db_xref="UniProtKB/TrEMBL:Q5KU03" FT /protein_id="BAE42146.1" FT /translation="MSGRPRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPG FT QGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKL FT DHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMY FT QLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYY FT RAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQI FT REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF FT DELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAAASPPANATAASD FT TNAGDRGQTNNAASASASNST" XX SQ Sequence 2312 BP; 586 A; 633 C; 574 G; 519 T; 0 other; gtcttgtgtc gccgccgtcg ccgccgcctg ggccgagtga caaaggaagg aaggcagcaa 60 ggaggagccg gccttgcagc cgctgacagg gcttcgggct ccgggcacag cgcggacact 120 tcccgagcag ccgctgagca aaggcgaggg gcggaggccg gccgtgccgg ggccacggac 180 gggggagggg accccgaggg acggaagcgg ttgcctggtt cccatgtccc cggcgtatgg 240 ggagcagtca gggagccgct gcctggggtc tgaagggagc tgcctccgcc gccgctgccg 300 ccatggccgc tggatccagc caccgcctgc agctgctcct ggcgcaatga ggagaggagc 360 cgccgccacc gcccgccgct gactcgcgac tgcgctgccc tccggttcac ccggccgccg 420 ccgccgtcag accgccggat cccgctgctg ccggagccgc agcgtttgcc gtcgcatctc 480 cgagccatct cctccctcct tcccatcccc cttctcttca agcgtgaggc tcgtgatcct 540 tccgccgctt cccttcttca ttgactcgga aaaaaatccc cgaggaaaaa tataatactc 600 agagtactta ttttcaatca agtatttgcc ctcgttcacg tgatatatat atatttttaa 660 ggattccact ccaccctttt tctcctcttc caggaaaggg aggtgaaaga attgtatttt 720 tctcccagct ctaaatcatc tatgtgttaa atatccgtac cgatctgtct tgaagaaata 780 catagctcct tttttttttc cttcttctta aatagctata caaaaggagt gaaaagccaa 840 gagaacgaag tctttctttc tctttcttgc gggagaactt aatgctgcat ttatcattaa 900 cctagcaccc taacataaaa caaaaggaag aaaaggatta aggaaggaaa aggtgattca 960 agaagagcca tcatgtcggg gcgaccgaga accacctcct ttgcggagag ctgcaagcca 1020 gtgcagcagc cttcagcttt tggtagcatg aaagttagca gagataaaga tggcagcaag 1080 gtaaccacag tagtggcaac tcctggccag ggtcctgaca ggccacagga agtcagttat 1140 acagacacga aagtgattgg aaatggatca tttggtgtgg tatatcaagc caaactttgt 1200 gattctggag aactggttgc catcaagaaa gttctacagg acaagcgatt taagaaccga 1260 gagctccaga tcatgagaaa gctagaccac tgtaacatag tccgactgcg gtatttcttc 1320 tactcgagtg gcgagaagaa agatgaggtc taccttaacc tggtgctgga ctatgttccg 1380 gagacagtgt acagagtcgc cagacactat agtcgagcca agcagacact ccctgtgatc 1440 tatgtcaagt tgtatatgta tcagctgttc agaagtctag cctatatcca ttcctttgga 1500 atctgccatc gagacattaa accacagaac ctcttgttgg atcctgatac agctgtatta 1560 aaactctgtg actttggaag tgcaaagcag ctggtccgag gagagcccaa tgtttcatat 1620 atctgttctc ggtactacag ggcaccagag ttgatctttg gagccactga ttacacgtcc 1680 agtatagatg tatggtctgc aggctgtgtg ttggctgaat tgttgctagg acaaccaata 1740 tttcctgggg acagtggtgt ggatcagttg gtggaaataa taaaggtcct aggaacacca 1800 acaagggagc aaattagaga aatgaaccca aattatacag aattcaaatt ccctcaaatc 1860 aaggcacatc cttggacaaa ggtcttccgg ccccgaactc caccagaggc aattgcactg 1920 tgcagccgtc tgctggagta cacacctacc gcccggctaa caccactgga agcttgtgca 1980 cattcatttt tcgatgaatt gcgggaccca aatgtcaaac taccaaatgg gcgagacaca 2040 cctgcactct tcaactttac cactcaagaa ctgtcaagta acccccctct ggccaccatc 2100 cttatccctc cacatgctcg gattcaggcc gctgcttcac cgcctgccaa cgccacagca 2160 gcctcagata ctaatgctgg agaccgtgga cagaccaata acgccgcttc tgcatcagct 2220 tccaactcca cctgaacagc ccccaggagc cagctgcgcg ggaaagacca gcacttactt 2280 gagtgccact cagcaacact ggtcacgttt gg 2312 //