Dbfetch
ID AK170328; SV 1; linear; mRNA; HTC; MUS; 1590 BP. XX AC AK170328; XX DT 09-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length DE enriched library, clone:F630047O13 product:1110013E13Rik protein (RIKEN DE cDNA 1110013E13 gene) (Lipocalin-1 interacting membrane receptor) homolog DE [Mus musculus], full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1590 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; b8b4d57d89a244d09175f377713daae4. DR Ensembl-Gn; ENSMUSG00000022999; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022317; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022275; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022250; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022282; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022050; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0022727; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0021573; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022019; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022145; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022125; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022217; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022145; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0022742; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021314; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0021623; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000023736; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0042499; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0042459; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0042424; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0042453; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0042187; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0042937; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0042284; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0042098; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0042253; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0042219; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0042322; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0042196; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0042979; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0041870; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0041579; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F630047O13 XX FH Key Location/Qualifiers FH FT source 1..1590 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F630047O13" FT /cell_type="NOD-derived CD11c +ve dendritic cells" FT /db_xref="taxon:10090" FT CDS 139..>1590 FT /codon_start=1 FT /transl_table=1 FT /note="1110013E13Rik protein (RIKEN cDNA 1110013E13 gene) FT (Lipocalin-1 interacting membrane receptor) homolog [Mus FT musculus] (UniProt|Q9D1E5, evidence: FASTY, 99.4%ID, FT 98.9%length, match=1452)" FT /note="putative" FT /db_xref="GOA:Q9D1E5" FT /db_xref="InterPro:IPR006876" FT /db_xref="InterPro:IPR008075" FT /db_xref="MGI:MGI:1289247" FT /db_xref="UniProtKB/Swiss-Prot:Q9D1E5" FT /protein_id="BAE41722.1" FT /translation="MEAADYEVLSVREQLFHDRVRECIISILLFATLYILCHIFLTRFK FT KPAEFTTVDDEDATVNKIALELCTFTLAVALGAVLLLPFSIIGNEVLLSLPRNYYIQWL FT NGSLIHGLWNLVFLFSNLSLVFLMPFAYFFTESEGFAGSRKGVLGRVYETVVMLILLTL FT LVLGMVWVASAIVDNDKASRESLYDFWEYYLPYLYSCISFLGVLLLLVCTPLGLARMFS FT VTGKLLVKPRLLEDLEEQLNCSAFEEAALTRRICNPTSCWLPLDMELLHRQVLALQAQR FT VLLEKRRKASAWQRNLGYPLAVLCLLVLTGLSVLIVAVHILELLIDEAAMPRGMQDAAL FT GQASFSKLGSFGAIIQAVLIFYLMVSSVVGFYSSPLFGSLRPRWHDTSMTQIIGNCVCL FT LVLSSALPVFSRTLGLTRFDLLGDFGRFNWLGNFYIVFLYNAAFAGLTTLCLVKTFTAA FT VRAELIRAFGLDRLPLPVSGFPRASR" XX SQ Sequence 1590 BP; 272 A; 485 C; 430 G; 403 T; 0 other; gcccttgagt ttccgtcacg ggcagcgagg agaggcgctt aggctgggtc cgggtgcttg 60 gcgggcggcg gcggcctcat ccccgctcgt cctccccggg cccggagaca cccccgcccc 120 agtcatgctg agcagagtat ggaagcagct gactacgaag tgctatccgt gcgagaacag 180 ctgttccacg acagggtccg cgagtgcatc atctcaatac ttctgtttgc aacactctac 240 atcctctgcc atatcttcct gacccgcttc aagaagcctg ctgagttcac cacagtggat 300 gatgaagatg ccacagttaa caagattgcg ctggagctgt gcacctttac cctggcggtc 360 gccctgggcg ccgtcttact cctgcccttc tccatcatcg gcaacgaggt gctgctctcg 420 ttgccacgca actactacat ccagtggctc aatggctccc tcatccatgg tctgtggaac 480 ctcgttttcc tcttctccaa tctgtccctc gtcttcctta tgccctttgc atatttcttc 540 acagagtctg aaggctttgc tggctccaga aagggtgtcc tgggccgggt ctacgagaca 600 gtggtgatgt tgatcctcct cacgctgctt gtgctgggca tggtgtgggt ggcatccgcc 660 attgtagaca atgacaaggc cagcagggag tcgctctacg acttctggga gtactacctc 720 ccctatctct actcctgtat ctccttcctc ggagttctgc tgcttctggt gtgcactcca 780 ctaggtctcg cccgcatgtt ctctgtcact gggaagttgc tggtcaagcc ccggctactg 840 gaagacctgg aggaacagct gaactgctca gcctttgagg aggcagctct gactcgaaga 900 atctgcaatc ccacctcctg ctggctgcca ctggacatgg aactgctgca taggcaggtc 960 ctggctctgc aggcacagag ggtcctcttg gaaaagcgtc ggaaggcgtc agcctggcaa 1020 cggaacctgg gctaccctct ggccgtgctg tgcttgctgg tgctgacggg cctgtctgtc 1080 ctcatcgtgg ctgtccacat cctggagctg cttattgacg aggctgccat gccacggggc 1140 atgcaggatg ctgccctagg ccaggcctcc ttctccaaac tgggatcctt tggcgccatc 1200 atccaggctg tgctgatatt ttacctgatg gtgtcctcag tggtgggttt ctacagctct 1260 ccactctttg gaagcctgag gcctaggtgg catgacacat cgatgacaca gatcattggg 1320 aactgtgtct gcctcctggt cctcagctca gcacttcctg tcttctctag aactcttggc 1380 ctgacacgct ttgacctgct gggtgacttt ggacgcttca actggctagg caatttctac 1440 atcgtgttcc tctacaacgc agcctttgct ggcctcacca cactctgtct ggtgaagacc 1500 ttcacggcag ctgtgagggc agagctgatc cgagcctttg ggctggacag actgccactg 1560 cctgtctctg ggtttccccg ggcttctagg 1590 //