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EBI Dbfetch

ID   AK162527; SV 1; linear; mRNA; HTC; MUS; 1707 BP.
XX
AC   AK162527;
XX
DT   09-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 10)
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DE   Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched
DE   library, clone:9530064P21 product:steroid 5 alpha-reductase 2-like, full
DE   insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-1707
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 1874d1867ff39461eea351c39a7dfbea.
DR   Ensembl-Gn; ENSMUSG00000029233; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000031143; mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=9530064P21
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FH   Key             Location/Qualifiers
FH
FT   source          1..1707
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="9530064P21"
FT                   /tissue_type="urinary bladder"
FT                   /db_xref="taxon:10090"
FT   CDS             24..1016
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="putative"
FT                   /note="steroid 5 alpha-reductase 2-like (MGD|MGI:1930252
FT                   GB|NM_020611, evidence: BLASTN, 100%, match=1704)"
FT                   /db_xref="GOA:Q9WUP4"
FT                   /db_xref="InterPro:IPR001104"
FT                   /db_xref="MGI:MGI:1930252"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9WUP4"
FT                   /protein_id="BAE36955.1"
FT                   /translation="MAGWAGFELSALNPLRTLWLALAAAFLFALLLQLAPARLLPSCAL
FT                   FQDLLRYGKTKQSGSRRPAVCRAFDVPKRYFSHFYVISVVWNGSLLWLLSQSLFLGAPF
FT                   PNWLSALLRTLGATQFQALEMESKASRMPAAELALSAFLVLVFLWVHSLRRLFECFYVS
FT                   VFSNAAIHVVQYCFGLVYYVLVGLTVLSQVPMDDKNVYVLGKNLLIQARWFHILGMVMF
FT                   FWSSAHQYKCHVILSNLRRNKKGVVIHCQHRIPFGDWFEYVSSANYLAELMIYISMAVT
FT                   FGLHNLTWWLVVTYVFSSQALSAFFNHKFYRSTFVSYPKHRKAFLPFLF"
FT   polyA_signal    1682..1687
FT                   /note="putative"
FT   polyA_site      1707
FT                   /note="putative"
XX
SQ   Sequence 1707 BP; 359 A; 463 C; 405 G; 480 T; 0 other;
     gatctgtagc cggctcccgg gctatggctg ggtgggccgg gtttgagctc tcggccctga        60
     accccctgcg gacgctgtgg ctggcgctgg ccgccgcctt cctgttcgcg ctgctgctgc       120
     agctggcgcc cgccaggctg ctgccgagct gcgcgctctt ccaggacctg ctccgctacg       180
     ggaagaccaa gcagtccggc tcgcggcgcc ccgccgtctg cagggccttc gatgtcccca       240
     agaggtactt ttctcacttc tacgtcatct cagttgtgtg gaatggctcc ctgctctggc       300
     tactttctca gtcgttgttc ctgggagcac cttttccaaa ctggcttagt gctctgctca       360
     gaactcttgg ggccacacag ttccaagccc tggagatgga gtccaaggct tctcggatgc       420
     cagcggctga gctggctctg tctgccttct tggtcttggt gttcctctgg gtccacagcc       480
     ttcggagact ctttgagtgc ttctacgtca gtgtcttctc taatgcagcc attcacgttg       540
     tgcagtactg tttcgggctt gtctactatg tgcttgttgg cctgactgta ctgagccaag       600
     tgcccatgga tgataagaat gtgtatgttc tggggaagaa tctactgata caagcccggt       660
     ggttccacat cctgggcatg gtgatgttct tctggtcatc cgcccatcag tataaatgcc       720
     acgtcatcct cagcaacctc aggagaaaca aaaaaggtgt ggtcatccac tgccagcacc       780
     ggatcccctt tggagactgg ttcgagtacg tgtcttcagc taactaccta gcagagctga       840
     tgatctacat ctccatggct gtcacctttg ggctccacaa cttaacctgg tggctggtgg       900
     tgacgtatgt cttctccagc caagccttgt ccgcattctt caaccacaag ttctacagaa       960
     gcacatttgt ctcctaccca aagcatagga aagcgttcct cccatttttg ttttaaagcg      1020
     ggctttatgg tgaagaaagc caggtgacag attccattcc tagaggcact gagacagaga      1080
     ccaaagtaca ctttctgcgg gaatgtttga cggtccttgt tctacttcag agccagccga      1140
     gcagtgttca ccgagcgagg cgttattcct ggagaacaca ttccagcaga cctaggcttg      1200
     caggatcggc tttctgccaa gctttacaga gctaactgat aacaagtaaa cgggtgtctc      1260
     caaactgctt tctggccgca ctaaccagta taaacagctg tgcatggata catgcatgct      1320
     tgagtcagtc tctctctctc tctctctctc tctatctctc tctctctctc tctctctctc      1380
     tctctctcta gctgtgggaa cagttaactg cactgagtgc tgtgggagat cataggtttt      1440
     taataaatgt cacatgccaa taaaaacagg aaactctgaa aataatatga atgtacagta      1500
     tcagaccggt ggttccaggg agtaaagagt ttgttggagt gagttaacat tcttcctttt      1560
     ctcaccgata tctcccgtta tagccccact ccctcacttg ccctgcaacc aacctaataa      1620
     taagtttaga aacttctttg atggaattct ctttttgatg tttgtactga aaacatcgag      1680
     aaataaaata tttttatacg tatgcat                                          1707
//


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