Dbfetch
ID AK160487; SV 1; linear; mRNA; HTC; MUS; 2033 BP. XX AC AK160487; XX DT 09-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, DE clone:2210414C06 product:albumin 1, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-2033 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; f90b4e23230344619e1f661050067bbb. DR Ensembl-Gn; ENSMUSG00000029368; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0029721; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0029687; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0029633; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0029697; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0029420; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0030151; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0028830; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0029390; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0029534; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0029493; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0029622; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0029522; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0030185; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0028549; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0028909; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000031314; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0072543; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0072622; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0072536; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0072549; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0072192; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0073016; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0072736; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0072149; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0072280; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0072183; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0072336; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0072185; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0073230; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0072204; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0071339; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=2210414C06 XX FH Key Location/Qualifiers FH FT source 1..2033 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /sex="male" FT /dev_stage="adult" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="2210414C06" FT /tissue_type="stomach" FT /db_xref="taxon:10090" FT CDS 39..1865 FT /codon_start=1 FT /transl_table=1 FT /note="albumin 1 (MGD|MGI:87991 GB|NM_009654, evidence: FT BLASTN, 99%, match=2028)" FT /note="putative" FT /db_xref="GOA:P07724" FT /db_xref="InterPro:IPR000264" FT /db_xref="InterPro:IPR014760" FT /db_xref="InterPro:IPR020857" FT /db_xref="InterPro:IPR020858" FT /db_xref="InterPro:IPR021177" FT /db_xref="MGI:MGI:87991" FT /db_xref="UniProtKB/Swiss-Prot:P07724" FT /protein_id="BAE35818.1" FT /translation="MKWVTFLLLLFVSGSAFSRGVFRREAHKSEIAHRYNDLGEQHFKG FT LVLIAFSQYLQKCSYDEHAKLVQEVTDFAKTCVADESAANCDKSLHTLFGDKLCAIPNL FT RENYGELADCCTKQEPERNECFLQHKDDNPSLPPFERPEAEAMCTSFKENPTTFMGHYL FT HEVARRHPYFYAPELLYYAEQYNEILTQCCAEADKESCLTPKLDGVKEKALVSSVRQRM FT KCSSMQKFGERAFKAWAVARLSQTFPNADFAEITKLATDLTKVNKECCHGDLLECADDR FT AELAKYMCENQATISSKLQTCCDKPLLKKAHCLSEVEHDTMPADLPAIAADFVEDQEVC FT KNYAEAKDVFLGTFLYEYSRRHPDYSVSLLLRLAKKYEATLEKCCAEANPPACYGTVLA FT EFQPLVEEPKNLVKTNCDLYEKLGEYGFQNAILVRYTQKAPQVSTPTLVEAARNLGRVG FT TKCCTLPEDQRLPCVEDYLSAILNRVCLLHEKTPVSEHVTKCCSGSLVERRPCFSALTV FT DETYVPKEFKAETFTFHSDICTLPEKEKQIKKQTALAELVKHKHKATAEQLKTVMDDFA FT QFLDTCCKAADKDTCFSTEGPNLVTRCKDALA" FT regulatory 2013..2018 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 2033 FT /note="putative" XX SQ Sequence 2033 BP; 577 A; 496 C; 469 G; 491 T; 0 other; gatcaccttt cctatcaacc ccactagcct ctggcaaaat gaagtgggta acctttctcc 60 tcctcctctt cgtctccggc tctgcttttt ccaggggtgt gtttcgccga gaagcacaca 120 agagtgagat cgcccatcgg tataatgatt tgggagaaca acatttcaaa ggcctagtcc 180 tgattgcctt ttcccagtat ctccagaaat gctcatacga tgagcatgcc aaattagtgc 240 aggaagtaac agactttgca aagacgtgtg ttgccgatga gtctgccgcc aactgtgaca 300 aatcccttca cactcttttt ggagataagt tgtgtgccat tccaaacctc cgtgaaaact 360 atggtgaact ggctgactgc tgtacaaaac aagagcccga aagaaacgaa tgtttcctgc 420 aacacaaaga tgacaacccc agcctgccac catttgaaag gccagaggct gaggccatgt 480 gcacctcctt taaggaaaac ccaaccacct ttatgggaca ctatttgcat gaagttgcca 540 gaagacatcc ttatttctat gccccagaac ttctttacta tgctgagcag tacaatgaga 600 ttctgaccca gtgttgtgca gaggctgaca aggaaagctg cctgaccccg aagcttgatg 660 gtgtgaagga gaaagcattg gtctcatctg tccgtcagag aatgaagtgc tccagtatgc 720 agaagtttgg agagagagct tttaaagcat gggcagtagc tcgtctgagc cagacattcc 780 ccaatgctga ctttgcagaa atcaccaaat tggcaacaga cctgaccaaa gtcaacaagg 840 agtgctgcca tggtgacctg ctggaatgcg cagatgacag ggcggaactt gccaagtaca 900 tgtgtgaaaa ccaggcgact atctccagca aactgcagac ttgctgcgat aaaccactgt 960 tgaagaaagc ccactgtctt agtgaggtgg agcatgacac catgcctgct gatctgcctg 1020 ccattgctgc tgattttgtt gaggaccagg aagtgtgcaa gaactatgct gaggccaagg 1080 atgtcttcct gggcacgttc ttgtatgaat attcaagaag acaccctgat tactctgtat 1140 ccctgttgct gagacttgct aagaaatatg aagccactct ggaaaagtgc tgcgctgaag 1200 ccaatcctcc cgcatgctac ggcacagtgc ttgctgaatt tcagcctctt gtagaagagc 1260 ctaagaactt ggtcaaaacc aactgtgatc tttacgagaa gcttggagaa tatggattcc 1320 aaaatgccat tctagttcgc tacacccaga aagcacctca ggtgtcaacc ccaactctcg 1380 tggaggctgc aagaaaccta ggaagagtgg gcaccaagtg ttgtacactt cctgaagatc 1440 agagactgcc ttgtgtggaa gactatctgt ctgcaatcct gaaccgtgtg tgtctgctgc 1500 atgagaagac cccagtgagt gagcatgtta ccaagtgctg tagtggatcc ctggtggaaa 1560 ggcggccatg cttctctgct ctgacagttg atgaaacata tgtccccaaa gagtttaaag 1620 ctgagacctt caccttccac tctgatatct gcacacttcc agagaaggag aagcagatta 1680 agaaacaaac ggctcttgct gagctggtga agcacaagca caaggctaca gcggagcaac 1740 tgaagactgt catggatgac tttgcacagt tcctggatac atgttgcaag gctgctgaca 1800 aggacacctg cttctcgact gagggtccaa accttgtcac tagatgcaaa gacgccttag 1860 cctaaacaca tcacaaccac aaccttctca ggctaccctg agaaaaaaag acatgaagac 1920 tcaggactca tcttttctgt tggtgtaaaa tcaacaccct aaggaacaca aatttcttta 1980 aacatttgac ttcttgtctc tgtgctgcaa ttaataaaaa atggaaagaa tct 2033 //