Dbfetch
ID AK159855; SV 1; linear; mRNA; HTC; MUS; 3355 BP. XX AC AK159855; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, DE clone:I420034H23 product:solute carrier family 40 (iron-regulated DE transporter), member 1, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3355 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 8d79b35b6aa80683e144a8c157b9a928. DR Ensembl-Gn; ENSMUSG00000025993; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0015996; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0015980; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0015935; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0015934; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0015767; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0016387; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0015349; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0015739; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0015840; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0015842; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0015910; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0015862; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0016434; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0015133; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0015410; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000027137; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0019694; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0019671; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0019628; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0019620; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0019449; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0020119; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0018956; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0019403; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0019517; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0019523; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0019605; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0019493; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0020173; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0018713; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0019044; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Takashi Ishikawa ( Department of Surgery CC 2 Yokohama City University 3-9 Fukuura,Kanazawa-ku,Yokohama CC 236-0004 Japan ) whose assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=I420034H23 XX FH Key Location/Qualifiers FH FT source 1..3355 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="I420034H23" FT /cell_type="osteoclast-like cell" FT /db_xref="taxon:10090" FT CDS 318..2030 FT /codon_start=1 FT /transl_table=1 FT /note="putative" FT /note="solute carrier family 40 (iron-regulated FT transporter), member 1 (MGD|MGI:1315204 GB|NM_016917, FT evidence: BLASTN, 98%, match=3305)" FT /db_xref="GOA:Q9JHI9" FT /db_xref="InterPro:IPR009716" FT /db_xref="InterPro:IPR036259" FT /db_xref="MGI:MGI:1315204" FT /db_xref="UniProtKB/Swiss-Prot:Q9JHI9" FT /protein_id="BAE35431.1" FT /translation="MTKARDQTHQEGCCGSLANYLTSAKFLLYLGHSLSTWGDRMWHFA FT VSVFLVELYGNSLLLTAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVI FT LCGIILMMVFLHKNELLTMYHGWVLTVCYILIITIANIANLASTATAITIQRDWIVVVA FT GENRSRLADMNATIRRIDQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYFL FT LWKVYQKTPALAVKAALKVEESELKQLTSPKDTEPKPLEGTHLMGEKDSNIRELECEQE FT PTCASQMAEPFRTFRDGWVSYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGS FT ILSILMGASAITGIMGTVAFTWLRRKCGLVRTGLFSGLAQLSCLILCVISVFMPGSPLD FT LSVSPFEDIRSRFVNVEPVSPTTKIPETVFTTEMHMSNMSNVHEMSTKPIPIVSVSLLF FT AGVIAARIGLWSFDLTVTQLLQENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPE FT AFGLLVLISVSFVAMGHLMYFRFAQKTLGNQIFVCGPDEKEVTDENQPNTSVV" XX SQ Sequence 3355 BP; 884 A; 708 C; 750 G; 1013 T; 0 other; gggtggcggc ggcggcggcg agagcaggct cggggtctcc tgcggccggt ggatcctcca 60 acccgctccc ataaggcttt ggctttccaa cttcagctac agtgttagct aagtttggaa 120 agaagacaaa aagaagaccc cgtgacagct ttgctgttgt tgtttgcctt agttgtcctt 180 tggggtcttt cggcataagg ctgttgtgct tatactggtg ctatcttcgg ttcctctcac 240 tcctgtgaac aagctcccgg gcaagagcag ctaaagctac cagcatcaga acaaacaagg 300 ggagaacgcc tggtgtcatg accaaggcaa gagatcaaac ccatcaggaa ggatgctgtg 360 gatccttagc aaactacctg acctcagcaa aattcctcct ctaccttggc cactctctct 420 ccacttgggg ggatcggatg tggcactttg cagtgtctgt gtttctggtg gaactctatg 480 gaaacagcct tctcttgaca gctgtctatg gactggtggt ggcaggctct gttctggtcc 540 tgggagccat cattggtgac tgggtggata agaatgccag acttaaagtg gcccagacgt 600 cactggtggt tcagaatgtg tccgtcatcc tctgcggaat catcctgatg atggttttcc 660 tacacaagaa tgagctcctg accatgtacc atggatgggt ccttactgtc tgctacatcc 720 tgatcatcac tattgcaaac attgcaaatt tggccagtac tgccactgcg atcacaatcc 780 aaagggactg gattgttgtt gtggcaggag aaaacaggag cagattagca gacatgaatg 840 ctaccattag aaggattgac cagctaacca acatcctggc ccccatggct gtcggccaga 900 ttatgacatt tggttctcca gtcattggct gtggttttat ttccggttgg aatttggtgt 960 ccatgtgtgt ggagtacttc ttgctctgga aggtttacca gaagacccct gctctggctg 1020 taaaagctgc tctcaaggta gaggagtcag aactgaagca gctgacctca cctaaagata 1080 ctgagccaaa acctttggag ggaactcatc taatgggtga gaaagactcc aacatccgtg 1140 aacttgaatg tgaacaagag cccacctgtg cctcccagat ggcagagccc ttccgcactt 1200 tccgagatgg atgggtctcc tactataacc agccagtgtt tctggctggc atgggcctgg 1260 ctttcctcta tatgacagtc ctgggctttg actgtatcac tacagggtac gcctacactc 1320 aggggctgag tggatccatc cttagtattt tgatgggagc atcagcaata actggaataa 1380 tgggaactgt ggccttcacc tggctacgtc gaaaatgtgg ccttgttcgg actggtctat 1440 tctcaggact agcccagctt tcctgtttaa tcttgtgtgt gatctccgta ttcatgcctg 1500 gaagcccctt ggacctgtct gtttctccat ttgaagatat ccgttctagg tttgtgaatg 1560 tggagccagt gtccccaact accaaaatac ctgagaccgt ctttacaaca gaaatgcata 1620 tgtccaacat gtctaatgtc catgagatga gtactaaacc catccccata gtctctgtca 1680 gcctgctgtt tgcaggagtc attgctgcta gaatcggtct ttggtccttt gatttgacgg 1740 tgacacagtt gctgcaagaa aatgtaattg aatctgaaag aggcattatc aatggtgtgc 1800 agaactccat gaactacctt cttgaccttc tgcatttcat catggtcatc ttggccccaa 1860 atcctgaagc ttttggcttg ctggtattga tttcagtctc ctttgtggca atgggacatc 1920 ttatgtattt ccgatttgcc cagaagactc tgggcaacca gatttttgtt tgtggtcctg 1980 atgaaaaaga agttacagat gaaaatcaac cgaatacatc tgttgtataa aaatagttta 2040 gctgtggccc ctgttactag attgtggaga gcatgtgtgc ttattttgta ctgcagaatc 2100 ccaataaatg cctgcatttc tctctggttt taccacatct gtgccttaag ggctaggagc 2160 actaactaac catcgccagc aaagatggtt atttctcctt acatgtaaac attggaaaat 2220 aggaagaggg agaggcagtc agcgtgtgta taggaagggt ttaatggtaa aatgaacttc 2280 ccttactctt atgagtatat taaattttaa agagtggttg tcaggtgagt aaaattattc 2340 cttagcagat atttattatc tactggaatg ataaatcaat tcaccctaaa actcactctt 2400 gtaaaactct gctccacttc ctttttttaa gatcagtgat atttttctca gttacattac 2460 agaaacaagt ttttcctcca tgtatgaagg ttatagttag ataatgaatg ttatccttat 2520 taatcccatt gaacttaagg aatttattgt atgtggagga tgaaatgtgt aactagactt 2580 gtccaaaagg ttcatggaat aacttttgca ttttgaccat cagaaagggc aaaatattac 2640 agtaatgtgt gtatggtggc tcttcataaa atgactctca aaatctgcag aaagaagaaa 2700 agttgtaggt ttctagtgtg gtacagaagg acttaaagct tgttattagt gtgattgtag 2760 aaactggaag ctaagggtga ggacctcatg taaccagagt cactgtcatc agccatcact 2820 aactattttg gtaaatgaga gaactgacct ggcaccttac aagcagaaaa gcggcccaca 2880 ctaagaaagg actgcaaatc agtgagtctg tatagaacat tttaccttca ctgacttggg 2940 ccgatgtgtt tgtcatctct gtgtttttct agagcaagaa tagtcacaaa agttcccctt 3000 tcaatatccc tgagaagaat aaagaaaaaa ctgtttgtaa atattttttt aaaactgttc 3060 tgcaagtctt tttgtaacat gcagtaccaa catgggacat tgccttaact tttgatgcac 3120 tttcatggag actgactgcc atgcattgct gtgagcactt tctttgtcgt tcagtttaat 3180 cttttccttc acctttatta cagtatgaca taatgatcta ctatgttgtc aaagcttcat 3240 aaaatatttc tatataaaat gtttgtagaa tcttcatttg cctttactga gttgtgttct 3300 cccaattatt gttacttatt tcaaaattag catataaaaa gtgtttgata tcatc 3355 //