Dbfetch

ID   AK158960; SV 1; linear; mRNA; HTC; MUS; 4450 BP.
XX
AC   AK158960;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE   Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
DE   clone:K530019N06 product:Fas apoptotic inhibitory molecule 2, full insert
DE   sequence.
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KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4450
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; f7819794067b0da0af1f07036c3d9cb3.
DR   Ensembl-Gn; ENSMUSG00000023011; mus_musculus.
DR   Ensembl-Gn; MGP_129S1SvImJ_G0022333; mus_musculus_129s1svimj.
DR   Ensembl-Gn; MGP_AJ_G0022291; mus_musculus_aj.
DR   Ensembl-Gn; MGP_AKRJ_G0022267; mus_musculus_akrj.
DR   Ensembl-Gn; MGP_BALBcJ_G0022297; mus_musculus_balbcj.
DR   Ensembl-Gn; MGP_C3HHeJ_G0022065; mus_musculus_c3hhej.
DR   Ensembl-Gn; MGP_C57BL6NJ_G0022742; mus_musculus_c57bl6nj.
DR   Ensembl-Gn; MGP_CASTEiJ_G0021590; mus_musculus_casteij.
DR   Ensembl-Gn; MGP_CBAJ_G0022034; mus_musculus_cbaj.
DR   Ensembl-Gn; MGP_DBA2J_G0022161; mus_musculus_dba2j.
DR   Ensembl-Gn; MGP_FVBNJ_G0022141; mus_musculus_fvbnj.
DR   Ensembl-Gn; MGP_LPJ_G0022232; mus_musculus_lpj.
DR   Ensembl-Gn; MGP_NODShiLtJ_G0022161; mus_musculus_nodshiltj.
DR   Ensembl-Gn; MGP_NZOHlLtJ_G0022757; mus_musculus_nzohlltj.
DR   Ensembl-Gn; MGP_PWKPhJ_G0021328; mus_musculus_pwkphj.
DR   Ensembl-Gn; MGP_WSBEiJ_G0021640; mus_musculus_wsbeij.
DR   Ensembl-Tr; ENSMUST00000023750; mus_musculus.
DR   Ensembl-Tr; MGP_129S1SvImJ_T0042551; mus_musculus_129s1svimj.
DR   Ensembl-Tr; MGP_AJ_T0042511; mus_musculus_aj.
DR   Ensembl-Tr; MGP_AKRJ_T0042477; mus_musculus_akrj.
DR   Ensembl-Tr; MGP_BALBcJ_T0042504; mus_musculus_balbcj.
DR   Ensembl-Tr; MGP_C3HHeJ_T0042238; mus_musculus_c3hhej.
DR   Ensembl-Tr; MGP_C57BL6NJ_T0042988; mus_musculus_c57bl6nj.
DR   Ensembl-Tr; MGP_CASTEiJ_T0042338; mus_musculus_casteij.
DR   Ensembl-Tr; MGP_CBAJ_T0042149; mus_musculus_cbaj.
DR   Ensembl-Tr; MGP_DBA2J_T0042305; mus_musculus_dba2j.
DR   Ensembl-Tr; MGP_FVBNJ_T0042272; mus_musculus_fvbnj.
DR   Ensembl-Tr; MGP_LPJ_T0042373; mus_musculus_lpj.
DR   Ensembl-Tr; MGP_NODShiLtJ_T0042248; mus_musculus_nodshiltj.
DR   Ensembl-Tr; MGP_NZOHlLtJ_T0043031; mus_musculus_nzohlltj.
DR   Ensembl-Tr; MGP_PWKPhJ_T0041921; mus_musculus_pwkphj.
DR   Ensembl-Tr; MGP_WSBEiJ_T0041632; mus_musculus_wsbeij.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by Michela Fagiolini and Takao K. Hensch (
CC   Laboratory for Neuronal Circuit Development Brain Science
CC   Institute RIKEN 2-1 Hirosawa,Wako-shi,Saitama 351-0198 Japan )
CC   whose assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=K530019N06
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FH   Key             Location/Qualifiers
FH
FT   source          1..4450
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="K530019N06"
FT                   /tissue_type="visual cortex"
FT                   /db_xref="taxon:10090"
FT   CDS             365..1318
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="Fas apoptotic inhibitory molecule 2 (MGD|MGI:1919643
FT                   GB|AK129246, evidence: BLASTN, 99%, match=2508)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8K097"
FT                   /db_xref="InterPro:IPR006214"
FT                   /db_xref="MGI:MGI:1919643"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8K097"
FT                   /protein_id="BAE34742.1"
FT                   /translation="MTQGKLSVANKAPGTEGQQHQANGEKKDAPAVPSAPPSYEEATSG
FT                   EGLKAGTFPQGPTAVPLHPSWAYVDPSGSSGYEGGFPAGHHEHFTTFSWDDQKVRRLFI
FT                   RKVYTILLVQLLVTLAVVALFTFCDVVKDYVQANPGWYWASYAVFFATYLTLACCSGPR
FT                   RHFPWNLILLTIFTLSMAYLTGMLSSYYNTTSVLLCLVITALVCLSVTIFSFQTKFDFT
FT                   SCQGVLFVLLMTLFFSGLLLAVLLPFQYVPWLHAVYAVLGAGVFTLFLAFDTQLLMGNR
FT                   RHSLSPEEYIFGALNIYLDIIYIFTFFLQLFGTNRE"
FT   regulatory      4435..4440
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      4450
FT                   /note="putative"
XX
SQ   Sequence 4450 BP; 911 A; 1307 C; 1188 G; 1044 T; 0 other;
     gatcagctgg tcgggtgtca gggagtcctg gtgcctcctc ccacccctgt ggacccatcc        60
     acctgctgct ccacggcgca aagctccccg gtcccctggg atggctgaag tgtgtgggag       120
     aagcagagga ggccaaagcg catgtcttgc cctgctctca ggtccgcagc atcctgcgtc       180
     cgcagcagca tcttcccagg ccctccccct ccccccgtgt gcggatggta cgctccggta       240
     agcctggccg ggttgcagtg gatgttgcta gaatccacgc ggaggaaaga agagacgcag       300
     gcaggctgcg gtgacccaag cggccacccc cgcttcaggg accccttcct cgagagaaga       360
     catcatgacc cagggaaagc tctctgtggc taacaaggcc cccgggactg aggggcagca       420
     gcaccaggca aatggagaga agaaggatgc tccggcagtg ccctcggcgc caccctccta       480
     tgaggaggcc acctctggag aggggctgaa ggcagggacc ttcccccagg gcccaacagc       540
     tgtgccactc catccaagct gggcctacgt ggaccccagc ggcagctccg gctatgaagg       600
     tggtttcccc gcaggacatc acgagcattt caccaccttc agctgggatg accagaaagt       660
     tcgtcggctc ttcatcagaa aggtctatac catcctattg gtccagctgc tggtgacctt       720
     ggctgtggtg gctctcttta ccttctgtga tgtcgttaag gactatgtcc aggctaaccc       780
     cggctggtac tgggcgtcct atgccgtgtt ctttgcaact tacctgactc tggcttgctg       840
     ttctggaccc aggagacatt tcccttggaa cctgattctg ctgaccatct ttaccctgtc       900
     catggcctac ctcactggga tgctgtccag ttactacaac accacatctg tgctgctgtg       960
     cctggtcatc acggctctcg tctgcctctc ggtcaccatc ttcagtttcc agaccaagtt      1020
     tgacttcacc tcctgtcagg gtgtgctgtt tgtgctgctc atgaccctct tcttcagtgg      1080
     actcctcctc gctgtcctcc tgcccttcca atacgtcccc tggctccacg cggtctatgc      1140
     tgtactggga gcgggtgtgt tcacgttgtt cctggccttt gatacccagt tgctgatggg      1200
     taaccgtcga cactcgctga gccccgagga gtatattttt ggagccctca acatctactt      1260
     agacattatc tatatcttca ccttcttcct gcagcttttt ggcaccaacc gggaatgagg      1320
     agccatcccc gcccccaccc ctcctccaga gaatgtccct tccctgtcct gtgaccctct      1380
     ccgtgctcct gtgagaccag acataaactc gctgcagcca gcttgtgagc agccgcttgc      1440
     tccctcctgc agccagccct cacggtgtcc ttctgcagct tgtacatatg ccatgcttgg      1500
     ggccctgcag atctgaggcc ataccatccc ctgcggtgcc cctggcaccc aactgcatct      1560
     tccaaatggc acagtcaagg ctgagggcac ctctgggttt gcagacccaa ggaatgagca      1620
     ggaggagccc ggcaggatct cagaggtggg gaggagaccc caggaaacct ggctgtgact      1680
     gtgaccccca ccaagtcttc tagggctcca ttttctcttt cagatcaaac aaccatgctt      1740
     cgtaagaaaa aaatagccaa gggggcatgg ctagagcatg aagtcagggc tctgtggcgt      1800
     agggtgaagc tgtccccagc tgtcactcgc ttagctgaag gccagttgct tgttctaggg      1860
     acctgggaat agaatgagaa taggaagcca ctggtttcgt tacttgcctc agtttcccct      1920
     cctgggtcat ccaggtcata gaacaggggg gtgggggcaa gatgtgctaa gcatagcctg      1980
     agctcccagg ggaagctggg ggggctgaac tgggggctgt caatcaaatt gcatccactg      2040
     gaaaggcaca tatgaccata gggctagaac cccatctctc tctctctctt tctctctctc      2100
     tctctctctc tctctctctc tctctctctc tctctcttcc actcagtgcc attcccacag      2160
     gcctgaaggg gaggtggggt agagggcctg gtgtggaagt ggttctgtct gctggactag      2220
     cccttaccag gggctgtcct tcaggcgctt ctacatgcat ttcctgggtc ttcccctgta      2280
     ttctgctgca ctctgtctta cctgcagcct gaagagtaga ggcatccatt tccctccccc      2340
     cagcttccct ggccactcag cccagagtcc ctgggccctt gcccccttat ctccacatct      2400
     ctgtaatttg gaagctgtcc agctaatggt cacagccagg gccagtccct tgagcctatc      2460
     ccttgcgatg aggccagagc tccttatcaa cctccaggct gctgggatct caggcagagt      2520
     gtgcgtcagc caccctgccc tggctgactg cctgttggag aggggaccag gggcccacac      2580
     ctggggcagc atgtgggcga cacatgcacc cggccagctc tagtccagtg gaaagttact      2640
     gggtgaaggc tacaaggccc tgagtggatg caggggaccc tgtctgcccc aggaaagggg      2700
     actaggtagc ccatccattc ccacccctac cctttcccac cctgcctact ccagcctttg      2760
     agaaatatta cagaagcatt tgaaattttg ttccatcttg gatatttgag gagggagggt      2820
     ggtatggagg gacagttggg gtgggtgctg gttcgaatga gcctacttgc agcagtccag      2880
     actggtcctg cagggttatc ggcatatccc catttcagaa gcaaagccaa gtagctccgg      2940
     aaggcttgga taaacccact gtcgtctaat aaacctgagg gacagcccac agctacttcc      3000
     tccagtctga gtctgggctg gattgagact tgtgtagccc ataggtgtgt gggtagacaa      3060
     gcactgacat ctccggggag ttgtgacacc cccacctgcc actgtcaccc agcctgcgga      3120
     tgccaaactc ttagcttttc cctccctgga ggtcagctgg gaagcagggt tcttggcttc      3180
     tggttctgac cccactgcca acagacttat tactctctgt gactctgttt tcctatctgc      3240
     aagatggaag tccccaaccg gtgccagtgg ggcagggaga gaggcaccaa gacacttggc      3300
     tgacttcctc ctctgcttgt tcccctttga gtgcctttcc taatctccag cttcagttct      3360
     agaaaggttt agagtccctc ccccaccccc actgacatgt caccctcaca ctggccagtt      3420
     tcccagaatc cacttgtcca agtcctcttc tgagacaatt tatgcagaga gcgaggattg      3480
     agaaaaattt tccaaggcta agttccaaaa accattgggg gaggggcaag ccctcagcca      3540
     taaataatgt gaccagggca caagtcacag tgatctcaaa gatggctggt gacggtgggg      3600
     aggcacggcg gctgaactgg ctccagggcc agagaaagcc ttgatgttga cccctggtgg      3660
     ggcagtgagg agtcccaggg acacctgggt gggtcttggc aggaggaagg gcggagaaac      3720
     aagaatgcag gattatgagg aatgcgggat tatgagaaac ctaaactggg caggtgcggc      3780
     aagctgtgta ggaggaagga ctgacgcctc ctggcccccc gcatttttag cttgggtgta      3840
     gccagaccta tgacggggta gattagattt cataaggctt gagggagcca ggaatatctg      3900
     atgtgaggct caaagctctc tgagaaaccg tgacagacca ggatgtcccc tccgaggctc      3960
     aagatgggac caagtagggg cattaagtcc ctcactcccc acaccaattc ctgggtccat      4020
     gcacagcttt ttcagtatag cccaaggaag ccacaagaca tccttgggtg tggtatggtt      4080
     cttccattcc ataccctttc ttctgtgtta gcctgcagga tcccttaagt acccttattc      4140
     caataggcca gggtgggggg tgggggcgtg tcaagttggg aattttacac aaggactttg      4200
     ctgccccctt ctggctgtta gaggaaaagc agagtctggc tttgcacaaa cccatctcta      4260
     ttcagtcccc tgctctgagt gtcagagaat ggagatatag caccaggcac aaggacttgc      4320
     ctgctacaca cccagacggg cctgcccttt tggcatcagc tcttcaagtt ccctatctct      4380
     tccgtgtgcc tgtctccggc ctcacctgcc caagatctgt gactgattgg aaataataaa      4440
     agcaattacg                                                             4450
//