ID AK156371; SV 1; linear; mRNA; HTC; MUS; 2217 BP.
XX
AC AK156371;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE Mus musculus activated spleen cDNA, RIKEN full-length enriched library,
DE clone:F830019A17 product:estrogen related receptor, alpha, full insert
DE sequence.
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KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-2217
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 14cd412df61781f34d4eb8f5dda91ccd.
DR Ensembl-Gn; ENSMUSG00000024955; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0024770; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0024736; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0024709; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0024736; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0024504; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_CASTEiJ_G0023976; mus_musculus_casteij.
DR Ensembl-Gn; MGP_DBA2J_G0024603; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0024569; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0024689; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0024598; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0025230; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0023722; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0024038; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000025906; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0050857; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0050837; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0050793; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0050786; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0050528; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_CASTEiJ_T0050663; mus_musculus_casteij.
DR Ensembl-Tr; MGP_DBA2J_T0050561; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0050527; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0050685; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0050523; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0051394; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0050256; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0049817; mus_musculus_wsbeij.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC assistance we gratefully acknowledge.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=F830019A17
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FH Key Location/Qualifiers
FH
FT source 1..2217
FT /organism="Mus musculus"
FT /strain="NOD"
FT /mol_type="mRNA"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="F830019A17"
FT /tissue_type="activated spleen"
FT /db_xref="taxon:10090"
FT CDS 176..1444
FT /codon_start=1
FT /transl_table=1
FT /note="estrogen related receptor, alpha (MGD|MGI:1346831
FT GB|BC039774, evidence: BLASTN, 100%, match=2215)"
FT /note="putative"
FT /db_xref="GOA:O08580"
FT /db_xref="InterPro:IPR000536"
FT /db_xref="InterPro:IPR001628"
FT /db_xref="InterPro:IPR001723"
FT /db_xref="InterPro:IPR013088"
FT /db_xref="InterPro:IPR024178"
FT /db_xref="InterPro:IPR027289"
FT /db_xref="InterPro:IPR035500"
FT /db_xref="MGI:MGI:1346831"
FT /db_xref="UniProtKB/Swiss-Prot:O08580"
FT /protein_id="BAE33690.1"
FT /translation="MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVTLASGPAPAR
FT CLPGHKEEEDGEGAGSGEQGSGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFK
FT RTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKR
FT RPEVDPLPFPGPFPAGPLAVAGGPRKTAPVNALVSHLLVVEPEKLYAMPDPASPDGHLP
FT AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQD
FT ELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALALANSDSVH
FT IEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFY
FT GVKLEGKVPMHKLFLEMLEAMMD"
XX
SQ Sequence 2217 BP; 420 A; 635 C; 737 G; 425 T; 0 other;
gcgcgatgtc cttttgtgtc ctacaagcag ccagcggcgc cgccgagtga ggggggacgc 60
agcgcggcgg ggcggtgcgg ccggaggagg cggcccccgc tcaccccggc gctccgggcc 120
gctcggcccc catgcctgcc cgccagccct gccggagccc aaggtgacca gcaccatgtc 180
cagccaggtg gtgggcatcg agcctctcta catcaaggca gagccagcca gtcctgacag 240
tccaaagggt tcctcagaga ctgagactga acccccggtg accctggcct ctggtccagc 300
tccagcccgc tgccttccag ggcacaagga ggaggaggat ggggaggggg cagggtctgg 360
tgagcagggc agtgggaagc tagtgctcag ctctctaccc aaacgcctct gcctggtctg 420
tggggatgtg gcctctggct accactacgg tgtggcatcc tgtgaggcct gcaaagcctt 480
cttcaagagg accatccagg ggagcatcga gtacagctgt ccggcctcca atgagtgtga 540
gatcaccaag cggagacgca aggcctgtca ggcctgccgc ttcaccaagt gcctgcgggt 600
gggcatgctc aaggagggtg tgcgtctgga ccgtgtccgc ggcggacggc agaagtacaa 660
acggcggcca gaggtggacc ctttgccttt cccgggcccc ttccctgctg gacctctggc 720
agtagctgga ggacccagga agacagcccc agtgaacgct ctggtgtcgc atctgctggt 780
ggttgaacct gagaagctgt acgccatgcc tgacccagca agccccgatg gacacctccc 840
cgctgtggcc actctctgtg acctttttga tcgagagata gtggtcacca tcagctgggc 900
caagagcatc ccaggcttct cctcactgtc actgtctgac cagatgtcag tactgcagag 960
tgtgtggatg gaagtgctgg tgctgggtgt ggcccagcgc tcactgccac tgcaggatga 1020
gctggccttt gctgaggacc tggtcctaga tgaagagggg gcacgggcag ctggcctggg 1080
ggatctgggg gcagccctgc tgcagctggt tcggcgactg caagctcttc ggctggagcg 1140
ggaggagtac gtcctgctga aagctctggc ccttgccaat tctgactctg tgcacattga 1200
agatgctgag gctgtggagc agctgcgcga agccctgcat gaggccctgc tggagtatga 1260
agctggccgg gctggccctg gagggggtgc tgagcggagg cgtgcaggca ggctgctgct 1320
tacgctgcca ctcctccgcc agacagcagg caaagtcctg gcccatttct atggggtgaa 1380
gctggagggc aaggtgccca tgcacaagct gtttttggaa atgcttgagg ccatgatgga 1440
ctgaggcaag gggtgggaca gggtggggtg gctggcagga tctgcccagc atagggtgtt 1500
agccccaaag gggcaaagct ggagtctggg cagtgccata gcctgctggc agggccaggg 1560
caatgccatc cgcccctggg agaaggcttc atgcccttcc ctccccactt tgtgtgtgtg 1620
ggggattgtc agaagccagg aaagtgaatg cccaggtgtg ggcacagtgc tgccccttgc 1680
aagccataac gtgcccccca agagtgttgg gggcctcgcg gaagccatag ggggctgcag 1740
gggatgtgca ggaggcagac actgatctca gggagggaag ggatggaggc cgccggctcc 1800
cactgggtga tgcttttgct gctgcttaat ccgatctcct ctccggagca gaggggggct 1860
tggaaagcaa aggccccgtc ccttcgctcc tctcctcatc cgcattgggc attattgccc 1920
ccccttgaag caataactcc aagcaggctc cagcccctgg accccagggg tggccagggc 1980
cccctatcag ctcccacctc aaggggtggg ggacagcact gcctctatgc cctgcagagc 2040
aataacacta tatttatttt tgggtttggc cagggaggcg cagggccatg gggcaagcca 2100
gggcccagag cccttggctg tacagagact ctattttaat gtatatttgc tgcaaagaga 2160
aaccgctttt ggttttgaac ctttaatgag aaaaaaaata tactatggag ctcaagc 2217
//