Dbfetch
ID AK154687; SV 1; linear; mRNA; HTC; MUS; 3572 BP. XX AC AK154687; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length DE enriched library, clone:F630103G19 product:oxidized low density lipoprotein DE (lectin-like) receptor 1, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3572 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 56108eba6839d2538d3bf4138c1e1972. DR Ensembl-Gn; ENSMUSG00000030162; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0031349; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0031320; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0031248; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0031327; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0031051; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0031786; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0030429; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0031011; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0031168; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0031118; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0031248; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0031156; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0031819; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_WSBEiJ_G0030517; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000032265; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0080446; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0080524; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0080447; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0080462; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0080079; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0080935; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0080648; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0080028; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0080191; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0080069; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0080220; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0080084; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0081196; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_WSBEiJ_T0079173; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F630103G19 XX FH Key Location/Qualifiers FH FT source 1..3572 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F630103G19" FT /cell_type="NOD-derived CD11c +ve dendritic cells" FT /db_xref="taxon:10090" FT CDS 60..1151 FT /codon_start=1 FT /transl_table=1 FT /note="oxidized low density lipoprotein (lectin-like) FT receptor 1 (MGD|MGI:1261434 GB|NM_138648, evidence: BLASTN, FT 98%, match=2136)" FT /note="putative" FT /db_xref="GOA:Q9EQ09" FT /db_xref="InterPro:IPR001304" FT /db_xref="InterPro:IPR016186" FT /db_xref="InterPro:IPR016187" FT /db_xref="InterPro:IPR033992" FT /db_xref="MGI:MGI:1261434" FT /db_xref="UniProtKB/Swiss-Prot:Q9EQ09" FT /protein_id="BAE32764.1" FT /translation="MTFDDKMKPANDEPDQKSCGKKPKGLHLLSSPWWFPAAMTLVILC FT LVLSVTLIVQWTQLRQVSDLLKQYQANLTQQDRILEGQMLAQQKAENTSQESKKELKGK FT IDTLTQKLNEKSKEQEELLQKNQNLQEALQRAANSSEESQRELKGKIDTITRKLDEKSK FT EQEELLQMIQNLQEALQRAANSSEESQRELKGKIDTLTLKLNEKSKEQEELLQKNQNLQ FT EALQRAANFSGPCPQDWLWHKENCYLFHGPFSWEKNRQTCQSLGGQLLQINGADDLTFI FT LQAISHTTSPFWIGLHRKKPGQPWLWENGTPLNFQFFKTRGVSLQLYSSGNCAYLQDGA FT VFAENCILIAFSICQKKTNHLQI" FT regulatory 3547..3552 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 3572 FT /note="putative" XX SQ Sequence 3572 BP; 1039 A; 761 C; 712 G; 1060 T; 0 other; gggcagttgg ctgaggtcct cgactgtttc agtttttcac tcttagcagg aatttggaga 60 tgacttttga tgacaagatg aagcctgcga atgacgagcc tgatcagaag tcatgtggca 120 agaagcctaa aggtctgcat ttgctttctt ccccatggtg gttccctgct gctatgactc 180 tggtcatcct ctgcctggtg ttgtcagtga cccttattgt acagtggaca caattacgcc 240 aggtatctga cctcttaaaa caataccaag cgaaccttac tcagcaggat cgtatcctgg 300 aagggcagat gttagcccag cagaaggcag aaaacacttc acaggaatca aagaaggaac 360 tgaaaggaaa gatagacacc ctcacccaga agctgaacga gaaatccaaa gagcaggagg 420 agcttctaca gaagaatcag aacctccaag aagccctgca aagagctgca aactcttcag 480 aggagtccca gagagaactc aagggaaaga tagacaccat cacccggaag ctggacgaga 540 aatccaaaga gcaggaggag cttctgcaga tgattcagaa cctccaagaa gccctacaga 600 gagctgcaaa ctcttcagag gagtcccaga gagaactcaa gggaaagata gacaccctca 660 ccttgaagct gaacgagaaa tccaaagagc aggaggagct tctacagaag aatcagaacc 720 tccaagaagc cctgcaaaga gctgcaaact tttcaggtcc ttgtccacaa gactggctct 780 ggcataaaga aaactgttac ctcttccatg ggccctttag ctgggaaaaa aaccggcaga 840 cctgccaatc tttgggtggc cagttactac aaattaatgg tgcagatgat ctgacattca 900 tcttacaagc aatttcccat accacctccc cgttctggat tggattgcat cggaagaagc 960 ctggccaacc atggctatgg gagaatggaa ctcctttgaa ttttcaattc tttaagacca 1020 ggggcgtttc tttacagcta tattcatcag gcaactgtgc ataccttcaa gacggagctg 1080 tgttcgctga aaactgcatt ctaattgcat tcagcatatg tcagaagaag acaaatcatt 1140 tgcaaattta gtgaatctaa agattctgga gaagaccatg agaagacttt tgactgtcgc 1200 tctgaaattt aagctattct ttattacctg catgtaaagc atgttggcct tgacatctgt 1260 cagttacctg atagctacag ttcacctcaa caaagacaag gaccagaagc aaatactggt 1320 ggatccagat gtttgaaatc tttgtatcaa aacgtgtgag ttcaattgtt tatccatata 1380 cactggcctt gcccctccaa agtctcccaa ccaacctgca atccttcttc cccttcgtgt 1440 tttaaatgat gcttcctgcc tgacctggcc atgctttgta ctcagtctcc tctacctcag 1500 tatgcctcct gttgccgcat gaaagacagg atgtagaaat cctcctcaag tgcaggcaga 1560 gggctcaaag gcaaagctcg tccgagaaat aacatgcaaa gaaacagaac tggaaaaact 1620 acactgcaaa caggaactca tgatctctaa aaagccatgg cttgatcttt atgacaggag 1680 tccatctcca gactgcactt ttacacacat attttttatt ttccttttat tgtaagttta 1740 tggatagttt gcctacttga attctgtgta ccacatgagt gcctggtgcc actgaagatc 1800 agaagaggac atcagattct ctggatctgg aattgcagat ggttgtaagc tgctatgtag 1860 atgtgaagaa ttgaattcgt gtcccctgga agaacagcca gtactctttg ccatgagcta 1920 tctctcaagc tcctgtgatc aattcttgta tcagttatgt ctccattttt gctctaccaa 1980 agaacagtgt tataacttta aaacagtaag tattttcatt attctagggg tattatagca 2040 gatatataga tatagatata gatgatatag atatagatat agatatagat atagatatag 2100 atatagatat agatatagat atagatatag atatagatat agatatagag tgtgtgtgtg 2160 tgtgtgtgtg tgtgtgtgtg tgtgtttcta tgctagatac atccttgaga agatgagaca 2220 gttttgtgtg aaatgagttt gtaataatcc aaatttaaaa ataaattcga tgattacctg 2280 tagtggtcat attaccacag ctaagatgat gaacatacct gtcacttctg cccctttcca 2340 aagcctcccc cctaaaacaa acaccaatct gctttcagtt cgcattttat agagcttatc 2400 attttgtttt taagacagaa tctcattata tagttctggc tggcctggaa ctcactacac 2460 agagcaggct ggcctccacc ttctagagct cctcctgcca gactcccaaa ccttaagact 2520 gaaggagtgc cctgccatgt gtgactcaaa caccttaatg tgaatggaat agcataagat 2580 gtccaggttt tttcagtcca gcttcttcca cttggtacaa tttttaattt ttgtgttcat 2640 acatctccac cacagtgttt gtatcagttc atcattcttt tcaaatgttg agccttcccc 2700 tgtggatcta tagtgtcatt tgttatctgt gtatttgttg atgcgatttg ggttgttttt 2760 atttggggtc acctacaaat aaagctgcta tggatgtcca tggacaaggc taatatctta 2820 ggtaagcacc tacgagtaag atgcttgggt cattcagtgt gggaatatat ggttggctat 2880 tttaaccatt cctgtttgaa aacattaatt tttttatttt tgaaatcaat tttttaaaaa 2940 attagtctat tttacatctc aaccccagtt tctcttcctc ctctcctctc aaccttctcc 3000 caccttctct ccctgacccc atccacccct cctccctttc tctccagaag aggggaggcc 3060 tcccatggat gccaaccagc ctcagcatct caagttacag taagaatagg tttgtcttct 3120 cttgtgaaaa tcttaatttt tagatttatc tattatatat gcagtacttt gcttgcacat 3180 atgtattggt accatgtaca tgaatggtac cagagaaagt cagaagaggc cattgtattt 3240 tctgggactg gaattacaga cggttttgaa caatcctata gactctggga actgaaccca 3300 ggtcctctgg aaaggcaagc agtgctctta acccctgagc catttcttct ggccttttag 3360 caatttttat taatatataa ctgtgtataa ttgcactttt agctcaaagt tcttaagtgt 3420 caaatagtct tggatttatt ttcatgttat cactgtctgt acaatttctg tgatgaaata 3480 actgagcata tattttgaga atttggtttt cttaaatttt aaatctgaag gatttacata 3540 tttgagaata aaaaccagcc agatatgaaa cg 3572 //