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EBI Dbfetch

ID   AK154687; SV 1; linear; mRNA; HTC; MUS; 3572 BP.
XX
AC   AK154687;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length
DE   enriched library, clone:F630103G19 product:oxidized low density lipoprotein
DE   (lectin-like) receptor 1, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3572
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 56108eba6839d2538d3bf4138c1e1972.
DR   Ensembl-Gn; ENSMUSG00000030162; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000032265; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC   Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC   Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=F630103G19
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3572
FT                   /organism="Mus musculus"
FT                   /strain="NOD"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="F630103G19"
FT                   /cell_type="NOD-derived CD11c +ve dendritic cells"
FT                   /db_xref="taxon:10090"
FT   CDS             60..1151
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="oxidized low density lipoprotein (lectin-like)
FT                   receptor 1 (MGD|MGI:1261434 GB|NM_138648, evidence: BLASTN,
FT                   98%, match=2136)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q9EQ09"
FT                   /db_xref="InterPro:IPR001304"
FT                   /db_xref="InterPro:IPR016186"
FT                   /db_xref="InterPro:IPR016187"
FT                   /db_xref="MGI:MGI:1261434"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9EQ09"
FT                   /protein_id="BAE32764.1"
FT                   /translation="MTFDDKMKPANDEPDQKSCGKKPKGLHLLSSPWWFPAAMTLVILC
FT                   LVLSVTLIVQWTQLRQVSDLLKQYQANLTQQDRILEGQMLAQQKAENTSQESKKELKGK
FT                   IDTLTQKLNEKSKEQEELLQKNQNLQEALQRAANSSEESQRELKGKIDTITRKLDEKSK
FT                   EQEELLQMIQNLQEALQRAANSSEESQRELKGKIDTLTLKLNEKSKEQEELLQKNQNLQ
FT                   EALQRAANFSGPCPQDWLWHKENCYLFHGPFSWEKNRQTCQSLGGQLLQINGADDLTFI
FT                   LQAISHTTSPFWIGLHRKKPGQPWLWENGTPLNFQFFKTRGVSLQLYSSGNCAYLQDGA
FT                   VFAENCILIAFSICQKKTNHLQI"
FT   polyA_signal    3547..3552
FT                   /note="putative"
FT   polyA_site      3572
FT                   /note="putative"
XX
SQ   Sequence 3572 BP; 1039 A; 761 C; 712 G; 1060 T; 0 other;
     gggcagttgg ctgaggtcct cgactgtttc agtttttcac tcttagcagg aatttggaga        60
     tgacttttga tgacaagatg aagcctgcga atgacgagcc tgatcagaag tcatgtggca       120
     agaagcctaa aggtctgcat ttgctttctt ccccatggtg gttccctgct gctatgactc       180
     tggtcatcct ctgcctggtg ttgtcagtga cccttattgt acagtggaca caattacgcc       240
     aggtatctga cctcttaaaa caataccaag cgaaccttac tcagcaggat cgtatcctgg       300
     aagggcagat gttagcccag cagaaggcag aaaacacttc acaggaatca aagaaggaac       360
     tgaaaggaaa gatagacacc ctcacccaga agctgaacga gaaatccaaa gagcaggagg       420
     agcttctaca gaagaatcag aacctccaag aagccctgca aagagctgca aactcttcag       480
     aggagtccca gagagaactc aagggaaaga tagacaccat cacccggaag ctggacgaga       540
     aatccaaaga gcaggaggag cttctgcaga tgattcagaa cctccaagaa gccctacaga       600
     gagctgcaaa ctcttcagag gagtcccaga gagaactcaa gggaaagata gacaccctca       660
     ccttgaagct gaacgagaaa tccaaagagc aggaggagct tctacagaag aatcagaacc       720
     tccaagaagc cctgcaaaga gctgcaaact tttcaggtcc ttgtccacaa gactggctct       780
     ggcataaaga aaactgttac ctcttccatg ggccctttag ctgggaaaaa aaccggcaga       840
     cctgccaatc tttgggtggc cagttactac aaattaatgg tgcagatgat ctgacattca       900
     tcttacaagc aatttcccat accacctccc cgttctggat tggattgcat cggaagaagc       960
     ctggccaacc atggctatgg gagaatggaa ctcctttgaa ttttcaattc tttaagacca      1020
     ggggcgtttc tttacagcta tattcatcag gcaactgtgc ataccttcaa gacggagctg      1080
     tgttcgctga aaactgcatt ctaattgcat tcagcatatg tcagaagaag acaaatcatt      1140
     tgcaaattta gtgaatctaa agattctgga gaagaccatg agaagacttt tgactgtcgc      1200
     tctgaaattt aagctattct ttattacctg catgtaaagc atgttggcct tgacatctgt      1260
     cagttacctg atagctacag ttcacctcaa caaagacaag gaccagaagc aaatactggt      1320
     ggatccagat gtttgaaatc tttgtatcaa aacgtgtgag ttcaattgtt tatccatata      1380
     cactggcctt gcccctccaa agtctcccaa ccaacctgca atccttcttc cccttcgtgt      1440
     tttaaatgat gcttcctgcc tgacctggcc atgctttgta ctcagtctcc tctacctcag      1500
     tatgcctcct gttgccgcat gaaagacagg atgtagaaat cctcctcaag tgcaggcaga      1560
     gggctcaaag gcaaagctcg tccgagaaat aacatgcaaa gaaacagaac tggaaaaact      1620
     acactgcaaa caggaactca tgatctctaa aaagccatgg cttgatcttt atgacaggag      1680
     tccatctcca gactgcactt ttacacacat attttttatt ttccttttat tgtaagttta      1740
     tggatagttt gcctacttga attctgtgta ccacatgagt gcctggtgcc actgaagatc      1800
     agaagaggac atcagattct ctggatctgg aattgcagat ggttgtaagc tgctatgtag      1860
     atgtgaagaa ttgaattcgt gtcccctgga agaacagcca gtactctttg ccatgagcta      1920
     tctctcaagc tcctgtgatc aattcttgta tcagttatgt ctccattttt gctctaccaa      1980
     agaacagtgt tataacttta aaacagtaag tattttcatt attctagggg tattatagca      2040
     gatatataga tatagatata gatgatatag atatagatat agatatagat atagatatag      2100
     atatagatat agatatagat atagatatag atatagatat agatatagag tgtgtgtgtg      2160
     tgtgtgtgtg tgtgtgtgtg tgtgtttcta tgctagatac atccttgaga agatgagaca      2220
     gttttgtgtg aaatgagttt gtaataatcc aaatttaaaa ataaattcga tgattacctg      2280
     tagtggtcat attaccacag ctaagatgat gaacatacct gtcacttctg cccctttcca      2340
     aagcctcccc cctaaaacaa acaccaatct gctttcagtt cgcattttat agagcttatc      2400
     attttgtttt taagacagaa tctcattata tagttctggc tggcctggaa ctcactacac      2460
     agagcaggct ggcctccacc ttctagagct cctcctgcca gactcccaaa ccttaagact      2520
     gaaggagtgc cctgccatgt gtgactcaaa caccttaatg tgaatggaat agcataagat      2580
     gtccaggttt tttcagtcca gcttcttcca cttggtacaa tttttaattt ttgtgttcat      2640
     acatctccac cacagtgttt gtatcagttc atcattcttt tcaaatgttg agccttcccc      2700
     tgtggatcta tagtgtcatt tgttatctgt gtatttgttg atgcgatttg ggttgttttt      2760
     atttggggtc acctacaaat aaagctgcta tggatgtcca tggacaaggc taatatctta      2820
     ggtaagcacc tacgagtaag atgcttgggt cattcagtgt gggaatatat ggttggctat      2880
     tttaaccatt cctgtttgaa aacattaatt tttttatttt tgaaatcaat tttttaaaaa      2940
     attagtctat tttacatctc aaccccagtt tctcttcctc ctctcctctc aaccttctcc      3000
     caccttctct ccctgacccc atccacccct cctccctttc tctccagaag aggggaggcc      3060
     tcccatggat gccaaccagc ctcagcatct caagttacag taagaatagg tttgtcttct      3120
     cttgtgaaaa tcttaatttt tagatttatc tattatatat gcagtacttt gcttgcacat      3180
     atgtattggt accatgtaca tgaatggtac cagagaaagt cagaagaggc cattgtattt      3240
     tctgggactg gaattacaga cggttttgaa caatcctata gactctggga actgaaccca      3300
     ggtcctctgg aaaggcaagc agtgctctta acccctgagc catttcttct ggccttttag      3360
     caatttttat taatatataa ctgtgtataa ttgcactttt agctcaaagt tcttaagtgt      3420
     caaatagtct tggatttatt ttcatgttat cactgtctgt acaatttctg tgatgaaata      3480
     actgagcata tattttgaga atttggtttt cttaaatttt aaatctgaag gatttacata      3540
     tttgagaata aaaaccagcc agatatgaaa cg                                    3572
//


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