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EBI Dbfetch

ID   AK154652; SV 1; linear; mRNA; HTC; MUS; 5938 BP.
XX
AC   AK154652;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length
DE   enriched library, clone:F630102F16 product:adenylate cyclase 7, full insert
DE   sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-5938
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 6cce66595b36ce58be657353660acef2.
DR   Ensembl-Gn; ENSMUSG00000031659; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000098521; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000168545; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000169037; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000171456; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by Dr. John Todd (Dept. of Medical Genetics
CC   Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome
CC   Trust/MRC building Addenbrookes Hospital Cambridge) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=F630102F16
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..5938
FT                   /organism="Mus musculus"
FT                   /strain="NOD"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="F630102F16"
FT                   /cell_type="NOD-derived CD11c +ve dendritic cells"
FT                   /db_xref="taxon:10090"
FT   CDS             496..3795
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="adenylate cyclase 7 (MGD|MGI:102891 GB|NM_007406,
FT                   evidence: BLASTN, 99%, match=4979)"
FT                   /note="putative"
FT                   /db_xref="GOA:P51829"
FT                   /db_xref="InterPro:IPR001054"
FT                   /db_xref="InterPro:IPR009398"
FT                   /db_xref="InterPro:IPR018297"
FT                   /db_xref="InterPro:IPR029787"
FT                   /db_xref="MGI:MGI:102891"
FT                   /db_xref="UniProtKB/Swiss-Prot:P51829"
FT                   /protein_id="BAE32743.1"
FT                   /translation="MPAKGRYFLNEGDEGPDQAALYEKYRLTSLHGPLLLLLLLVAAAT
FT                   CIALISIAFSHEDLRRHQVVLGTAFLMLTLFVALYVLVYVECLVQRWLRALALLTWACL
FT                   MVLGSVLMWDSLENEAHAWEQVPFFLFVVFVVYALLPLSRRAAIVAGVTSTVSHLLVFG
FT                   AVTRAFQTSMSSTQLGLQLLANAVILLGGNFTGAFHKHQLQDASRDLFIYTVKCIQIRR
FT                   KLRVEKRQQENLLLSVLPAHISMGMKLAIIERLKEGGDRHYMPDNNFHSLYVKRHQNVS
FT                   ILYADIVGFTRLASDCSPKELVVVLNELFGKFDQIAKANECMRIKILGDCYYCVSGLPV
FT                   SLPTHARNCVKMGLDICEAIKQVREATGVDISMRVGIHSGNVLCGVIGLRKWQYDVWSH
FT                   DVSLANRMEAAGVPGRVHITEATLNHLDKAYEVEDGHGEQRDPYLKEMNIRTYLVIDPR
FT                   SQQPPPPSHHLSKPKGDATLKMRASVRVTRYLESWGAARPFAHLNHRESVSSSETPISN
FT                   GRRQKAIPLRRHRAPDRSASPKGRLEDDCDDEMLSAIEGLSSTRPCCSKSDDFHTFGPI
FT                   FLEKGFEREYRLVPIPRARYDFACASLVFVCILLVHLLVMPRMATLGVSFGLVACLLGL
FT                   VLSFCFATEFSRCFPSRSTLQAISESVETQPLVRLVLVVLTVGSLLTVAIINMPLTLNP
FT                   GPEQPGDNKTSPLAAQNRVGTPCELLPYYTCSCILGFIACSVFLRMSLELKAMLLTVAL
FT                   VAYLLLFNLSPCWHVSGNSTETNGTQRTRLLLSDAQSMPSHTLAPGARETAPSPSYLER
FT                   DLKIMVNFYLILFYATLILLSRQIDYYCRLDCLWKKKFKKEHEEFETMENVNRLLLENV
FT                   LPAHVAAHFIGDKAAEDWYHQSYDCVCVMFASVPDFKVFYTECDVNKEGLECLRLLNEI
FT                   IADFDELLLKPKFSGVEKIKTIGSTYMAAAGLSAPSGHENQDLERKHVHIGVLVEFSMA
FT                   LMSKLDGINRHSFNSFRLRVGINHGPVIAGVIGARKPQYDIWGNTVNVASRMESTGELG
FT                   KIQVTEETCTILQGLGYSCECRGLINVKGKGELRTYFVCTDTAKFQGLGLN"
FT   regulatory      5920..5925
FT                   /note="putative"
FT                   /regulatory_class="polyA_signal_sequence"
FT   polyA_site      5938
FT                   /note="putative"
XX
SQ   Sequence 5938 BP; 1353 A; 1531 C; 1582 G; 1472 T; 0 other;
     ggcagttgcc gagagagttt tgggctgggg gaagaagatg tctctacctg gaagctccca        60
     ggagacagct gtggagccca cgagagccac agggccttga cctcatctct tcccaccatc       120
     caagagggca aagtcagggg ctttaaacgg gagaggagag acgactcagc actcctcgtg       180
     ataaggccct gtggatgtgt ggctagcttg ctctgtcctg tgcgtcaagg aatgcaggtg       240
     caaagagctg aggacctgga agtttctgtc agctcctcct agacaccctg aagacaccag       300
     tgaacagaac ccagtggctg gagcaggtgt cacatgctca tggagccacg ggctctaggt       360
     gcctctgtcc agtcctgcct gataccctca gaaagggaag aagcctagac cacacactaa       420
     agcgtcagct gacagatgta tctcagaccg tggggctcct gagcaggctg ctggaccagg       480
     ccactgggga agaggatgcc agccaagggg cgctacttcc taaatgaggg tgatgaaggc       540
     cccgaccagg cagcgctcta tgagaagtac cggctcacca gcttgcacgg gccactgctg       600
     ctcttgctcc tcctggtggc cgcggccacc tgcattgcgc tcatcagcat cgccttcagt       660
     catgaggatc tccgcagaca ccaggttgtc ctgggcactg cgttcctcat gctgacgctg       720
     tttgtggctc tctatgtgct ggtgtatgtc gagtgcctgg tgcagcggtg gctgcgggcc       780
     ttggcgctac tcacctgggc ttgcctcatg gtactaggct ccgtgctgat gtgggactct       840
     ttggagaatg aagcccatgc gtgggagcag gtgcctttct tcctgtttgt cgtctttgtg       900
     gtgtatgcac tactgcctct cagcaggagg gcagccatcg tggcaggcgt gacctccacg       960
     gtctcccatc tcctggtgtt tggagctgtg acaagagcct tccagacgtc catgtctagc      1020
     actcaactgg ggctgcagct cctggccaat gccgttatcc tcctgggtgg gaacttcacg      1080
     ggtgccttcc acaagcacca gctgcaggac gcgtccaggg atctctttat ctacaccgtc      1140
     aaatgcatcc agatccgtcg gaagcttcgt gtggagaagc gccagcagga gaacctgctt      1200
     ctgtcagtgc tcccagcaca catctccatg ggtatgaagc tggccatcat tgagcgcctc      1260
     aaagagggtg gtgaccgaca ctacatgccc gacaacaact ttcacagcct ctatgtcaag      1320
     cggcaccaga atgtcagcat cttgtatgca gacatcgtgg gcttcacgag gctggccagc      1380
     gactgctctc ccaaggagct ggtggtggtg ctcaacgagc tgtttgggaa gtttgaccag      1440
     attgctaagg ccaatgagtg catgcggatc aagatcctgg gtgactgtta ctactgcgtg      1500
     tcaggcctgc ccgtgtcgct gcccacacat gcccgcaact gtgtgaagat gggtctggac      1560
     atctgcgagg ccattaagca ggtgcgtgag gccacgggcg tggacatcag catgcgtgtg      1620
     ggcattcact ccgggaatgt gctatgtggg gtcatcgggc tccgtaagtg gcagtatgat      1680
     gtgtggtccc atgatgtgtc cctggccaac aggatggagg cagctggagt ccctggccgg      1740
     gtgcacatca cagaggcaac attgaatcac ctggacaagg catatgaggt ggaggatggg      1800
     catggggagc agcgagaccc ctatctgaaa gagatgaaca tccgaaccta cctggtgatc      1860
     gatccccgga gccagcagcc acccccaccc agccaccacc tctccaagcc caagggggac      1920
     gcaactctga agatgcgggc ttcagtgcgt gtaacccgct atctggagtc ttggggggca      1980
     gcaaggccct ttgcacacct caaccaccgg gagagtgtga gcagcagtga gacccccatc      2040
     tccaatggac ggaggcagaa ggccattcct ctgcgtcgac accgtgcccc tgataggagt      2100
     gcatctccca aggggcgctt ggaagatgac tgtgatgacg agatgctgtc agccattgag      2160
     ggtctcagct ccaccaggcc ctgctgctcc aagtctgatg acttccacac ctttggtccc      2220
     atcttcttgg agaagggctt tgagcgtgag taccgcctgg tgcccatccc ccgggctcgc      2280
     tacgacttcg cctgtgccag ccttgtcttc gtctgcatcc tgcttgtcca ccttctagtg      2340
     atgcccagga tggcaactct gggtgtgtcc tttgggttgg tggcctgcct gctggggctg      2400
     gttctgagtt tctgctttgc tactgagttc tcgaggtgct ttccatcccg aagtacactc      2460
     caggccatct cggagagcgt ggagacgcag cccctggtca ggcttgtcct ggttgtgctg      2520
     actgttggca gcctactgac tgtcgccatc attaacatgc cactgacgct taacccaggc      2580
     ccagagcagc ctggagacaa caagacaagc ccactggctg cacagaacag agttgggacc      2640
     ccatgtgagc tcctcccgta ctacacctgc agctgcatcc tgggcttcat tgcatgctct      2700
     gttttcctgc ggatgagcct agagctgaag gccatgctgc tgacagtggc cttggtggcc      2760
     tacctgctgc tcttcaacct ctccccatgc tggcacgtct caggcaacag cactgagacc      2820
     aacgggacac aaaggacacg gctgctcctg tctgatgcac aaagcatgcc cagccacacc      2880
     cttgctccgg gggctcggga gactgcccct tctcccagtt atttagagag agacctgaag      2940
     atcatggtta acttctacct gatcctgttc tatgccaccc tcatcttgct gtctaggcag      3000
     attgactact actgccgctt ggactgtctg tggaagaaga agttcaaaaa ggagcacgag      3060
     gagtttgaaa caatggagaa tgtgaaccgc ctcctcctgg agaatgtgct gccggcgcac      3120
     gtggctgccc acttcattgg ggacaaggca gcagaggatt ggtaccatca atcttatgac      3180
     tgtgtctgtg tcatgtttgc atccgttccg gacttcaaag tgttctacac tgagtgtgat      3240
     gtcaacaaag aaggactgga gtgccttcga ctgctgaatg agataattgc tgattttgac      3300
     gagctcctgc tgaagcccaa gtttagtggt gtggagaaga tcaagaccat tggcagcacc      3360
     tacatggcgg cagcagggct cagtgccccc tcaggacatg agaaccagga cctggagcgg      3420
     aagcacgtgc acatcggagt cttggtagaa tttagcatgg ccctgatgag caagctggat      3480
     gggatcaaca ggcactcctt caactccttc cgcctccgag tcggcataaa ccacgggcct      3540
     gtgattgctg gagtgattgg agcacgcaag cctcagtatg acatctgggg aaacacagtc      3600
     aatgttgcca gccgcatgga gagcaccgga gagcttggga aaatccaggt taccgaagag      3660
     acatgcacta tcctccaggg actcggatat tcgtgtgaat gccgtgggct gatcaacgtc      3720
     aaaggcaaag gggaactgcg gacttacttt gtatgtacag acactgccaa gtttcaaggg      3780
     ctggggctaa actgaggtgg ctggtggtca gcctccttcc ccgagggagc caagaatgta      3840
     gccccatgtc tgttgcagtg gcttctttgg acttgcacta caggatggct ttgacctgtg      3900
     catcagattc tgtttgaagc agctactgcg ttgtacacag aggctctgtg cttcagcctc      3960
     tacagttcca aattagctag accactggtc tactacaggc tgtgttcatt tccagggtgc      4020
     tggggaagag acttcagtgc atgaccaaga tagacatcca ccttggtggc cagtgaacag      4080
     cattcacagg agacaaaagc tctactggct acaggaggct cagccaggct gactagcatg      4140
     ggttgctgct tgccttcctc ccatcaaatc taccatggga tgttattctc tcaattaggc      4200
     attctggtaa atggagttga aaactgtgta tattggtggg tagtctcaaa acagcagaga      4260
     aaatgtctga tctacacttg tcactttttt ccatctctgg cttatgtttg aaacggacat      4320
     gtcataaaca gagttttagc tttaccactg actcttagat gctagacaaa gatctccacc      4380
     tttctagtgt attttctctt gttaaccaca gactacaagt aaataggtct gctgtctagt      4440
     gtccgtttat aggatcagat tggctgcagg gacagagttc taaggaatgg ggctcatagc      4500
     agcagcaaag ctttgaattt gcaatcaagc attttttgat gcaaatcttt cgggacaagg      4560
     ctcaggaagt ttaaagtcta gaaatgaggt atgatgtttc agtttttctg tgtgcacttt      4620
     atttattttg gagtcagggt cagcctagct tggtctcaaa cttctaacct cctgtttcgg      4680
     tctccggaga gtttcaatta cagatgtgca cgactatctc cagctgtttc tgtgggaaag      4740
     cctgtgtaga caggcttgga caactttgta gcacttgcct tttctccagt cttctgagct      4800
     gactgcagag cttcaagaac aatccacttg gcaggaacat gtgttcagga ctctggcctg      4860
     tgaactgagc ccctcaacaa atgccaaatt gttcttatgc aaatgagtca aggcaaaagc      4920
     cagcttcgtg agatgggtgt cttactgtgc ttagctccag agcattccga gagatgacca      4980
     aacaccccac tcctttttgg aaatgacttc actgccacag aacgcactac atcatggtct      5040
     tcttagctag cagtcaccaa ggaacctcca gagtctacaa atgatataag tgccgcagac      5100
     agggtgctaa ccagcaggtt tacccgggac tttagtccaa ggctgagtag tcagggacgc      5160
     agaggggaga gataggaact gtttgcttgt gctgtctcct gtggagtttc atcagcccag      5220
     gaaagaaagg ctgattttag tttgcacaaa ggaatctagt agtggccagg gcttcccagc      5280
     aaggcatctc tggggagtta gtaaagctcc tggtgatgcc cgcaatgccg tgcagacaga      5340
     gagcaggaca gagcttcctt ccctgaggct gacacatttc tactcttcca acagccaagt      5400
     tacctttccc ctccaagcaa cagaaatctt agcttgagtt taaaagtaat tggctgccat      5460
     tcatgcattg tttcttttca actgaagcac tgtgcctgga gtattttaag ttattgttca      5520
     ggtcctaaga gtgtaactga cagaaaacat cacttgggac tcatgcatac atacttggtt      5580
     tctactttcc aagtaatttc tttacaagtg tcttgttttt tcacaggaac tttttttttt      5640
     aaacccttct gtgggtcaag gattcgtttc aggatctcta ctaaggcggc cttctctgac      5700
     tacagacagt aatacaccgt cttctgactt aaagacactt cctgacaaag tgattgttac      5760
     tgtgtacttc atagatgaca ggtcaatgct ccgagtgggt acaagcaaat aactatggtt      5820
     tgttctgtat gtttaatatt tatagacatt tgcttcagtg ttctgttcca ttttcataaa      5880
     tcatcagtgc ctggctcctt tttatatgtt caaccaacaa ttaaaacatc tgaatgcc        5938
//


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