Dbfetch
ID AK154242; SV 1; linear; mRNA; HTC; MUS; 1913 BP. XX AC AK154242; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 10) XX DE Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length DE enriched library, clone:F630011K01 product:endothelial differentiation, DE G-protein-coupled receptor 6, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1913 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; b63d27b0a7d729f2a7446267843dcf74. DR Ensembl-Gn; ENSMUSG00000044199; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0017562; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0017540; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0017501; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0017502; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0017325; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0017956; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0016892; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0017297; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0017403; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0017397; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0017474; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0017423; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0017997; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0016673; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0016952; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000053646; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0026505; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0026474; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0026444; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0026452; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0026254; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0026944; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0025825; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0026182; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0026308; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0026299; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0026415; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0026295; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0026982; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0025532; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0025779; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Dr. John Todd (Dept. of Medical Genetics CC Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome CC Trust/MRC building Addenbrookes Hospital Cambridge) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=F630011K01 XX FH Key Location/Qualifiers FH FT source 1..1913 FT /organism="Mus musculus" FT /strain="NOD" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="F630011K01" FT /cell_type="NOD-derived CD11c +ve dendritic cells" FT /db_xref="taxon:10090" FT CDS 23..1183 FT /codon_start=1 FT /transl_table=1 FT /note="endothelial differentiation, G-protein-coupled FT receptor 6 (MGD|MGI:1333809 GB|AK075854, evidence: BLASTN, FT 99%, match=1909)" FT /note="putative" FT /db_xref="GOA:Q9Z0L1" FT /db_xref="InterPro:IPR000276" FT /db_xref="InterPro:IPR004061" FT /db_xref="InterPro:IPR004064" FT /db_xref="InterPro:IPR017452" FT /db_xref="MGI:MGI:1333809" FT /db_xref="UniProtKB/Swiss-Prot:Q9Z0L1" FT /protein_id="BAE32458.1" FT /translation="MNISTWSTLVTPESCHRLAASGHSLLIVLHYNHSGRLASRGGSED FT GGGLGMLRGPSVAAGCLVVLENAMVLAAIAIYMRSRRWVYYCLLNITLSDLLTGLAYVV FT NVLLSGTRTFQLSPVHWFLREGLLFMALAASTFSLLFTAGERFATMVRVAESGATKTSR FT VYGCIGLCWLLAAILGLLPLLGWNCVCAFPRCSSLLPLYSKGYVLFCVVVFALILVAIL FT SLYGAIFRVVRANGQKSPRPPARRKSRRLLNTVLMILVAFVVCWGPLFGLLLADIFGSN FT VWAQEYLRGMDWILALAVFNSAINPLIYSFRSREVQRAVLAFLCCGCLWLGLRGPGDCL FT TRITEAHSGASTTDSSLRPRDSFRTSRSLSFRMREPLSSISSVRST" FT regulatory 1893..1898 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1913 FT /note="putative" XX SQ Sequence 1913 BP; 327 A; 585 C; 569 G; 432 T; 0 other; gagtctgtcc ccgggggagg ccatgaacat cagtacctgg tccacgctgg tgaccccaga 60 gtcctgccac cggctggcag ccagcggcca cagcctcctc attgtcctgc actacaatca 120 cagcggcagg ctggccagcc gcgggggctc tgaggacggt ggagggctag ggatgctgag 180 ggggccgtcg gtggccgcag gttgcctggt ggtgctggag aacgccatgg tgctggccgc 240 catcgccatc tacatgcggt cccgccgctg ggtgtactac tgcctgctga acatcacact 300 gagtgacctg ctcacaggcc tggcctacgt ggtcaacgtg ctgctgtcag ggactcgtac 360 cttccagctg tcaccggtgc actggttcct gcgggagggc ctgctcttca tggccttggc 420 cgcatccacc ttcagtctgc tcttcacggc cggcgagcgc ttcgccacca tggtgcgggt 480 ggctgagagt ggggccacca agaccagccg tgtgtatggc tgcatcggtc tgtgctggct 540 actggcagct atcctgggcc tgctgcccct gctgggctgg aactgtgtgt gcgccttccc 600 acgctgctcc agcctgctgc ccctctactc caagggctat gtgctctttt gtgtggtggt 660 cttcgccctc atcctagtgg ctatcctgag cctctacggg gccatcttta gagtggtccg 720 agccaatggg cagaagtctc cacgtcctcc tgcccgccgc aagtcccgca ggctactcaa 780 caccgtgctg atgatcttgg tggcctttgt ggtgtgctgg ggtcccctgt ttggcctgct 840 cctggctgac atctttggtt ctaatgtctg ggcccaggag tacctgcgtg gcatggactg 900 gatcctggcc ctggccgtgt tcaactcagc cattaatcct ctcatctact ccttccgcag 960 ccgtgaggtg cagcgcgctg tgctggcctt cctgtgctgc ggctgtctct ggctaggtct 1020 gcgaggtcca ggagactgcc tgacccggat caccgaggcc cactccggtg catccaccac 1080 tgacagctcc ctgaggccca gggacagttt tcggacttct cggtcactca gcttcaggat 1140 gagagagccg ctgtccagca tttccagcgt ccgcagcacc tagagcttgg accagccagt 1200 tgcccactga gcaggccctc ccagacgagg tgagaaggga caggacacaa gaaccttgcc 1260 tgatggtgac tgagaacatg acagcaagcc ccgggttcct tccacaaaat tccccgtgat 1320 gaatgtttgg cagagagtgg ctggagccag agccagtgag tctgggcctt gaagggcccc 1380 tcccccccgc ccaggcagca aaggggatgt gccatgtccg aggccatgga caggacagag 1440 ctttgtggtt ctgtcttagt cacatgtgtt caggtcaatg cccaggctac tgtaatgtgt 1500 ctcctggtca tacccactgg tatacagtgc tttgggggtg tgctgggatg ggggtggacc 1560 tgcaccattt gtttgagggc aacttgacgt gtttaagaat gaaagggggc ctggagggca 1620 caccagtctg tcatccaccc ctcttctcaa tgacttctac attgggacaa gcagcctgcc 1680 cccgatggcc tccctcctcc agttcaggtt ctctgtctct gtgtggggag gatagagcca 1740 cccactccag gtctggggca atctcaactg gtcctgtaac cccgcagcct cgcccttcct 1800 gttctgaatc acggagatat gctgtggcag ggagctgtgg accctaccat gtgatagtgc 1860 agctgcaagc catgcatggc tgcataaaat tcattaaaat gaacgaaacc tcc 1913 //