Dbfetch
ID AK152652; SV 1; linear; mRNA; HTC; MUS; 3672 BP.
XX
AC AK152652;
XX
DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
DE library, clone:I830081N02 product:UDP-Gal:betaGlcNAc beta
DE 1,4-galactosyltransferase, polypeptide 5, full insert sequence.
XX
KW CAP trapper; HTC; HTC_FLI.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3672
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
XX
RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
XX
RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
XX
RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
XX
RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
XX
RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
XX
RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
XX
RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
XX
DR MD5; 6633764bfce6f4ec7fa76a268fa7df1a.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Tissues were provided by David A. Hume ( Depts. of Biochemistry
CC and Microbiology/Parasitology Institute for Molecular Bioscience
CC University of Queensland Brisbane,Q 4072 Australia ) whose
CC assistance we gratefully acknowledge.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=I830081N02
XX
FH Key Location/Qualifiers
FH
FT source 1..3672
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="I830081N02"
FT /cell_type="macrophage"
FT /tissue_type="bone marrow"
FT /db_xref="taxon:10090"
FT CDS <1..783
FT /codon_start=1
FT /transl_table=1
FT /note="UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase,
FT polypeptide 5 (MGD|MGI:1927169 GB|AK079138, evidence:
FT BLASTN, 99%, match=1466)"
FT /note="putative"
FT /note="start codon is not identified"
FT /db_xref="GOA:Q3U7I0"
FT /db_xref="InterPro:IPR003859"
FT /db_xref="InterPro:IPR027791"
FT /db_xref="InterPro:IPR027995"
FT /db_xref="InterPro:IPR029044"
FT /db_xref="MGI:MGI:1927169"
FT /db_xref="UniProtKB/TrEMBL:Q3U7I0"
FT /protein_id="BAE31389.1"
FT /translation="MSEIAMDDIHELFSRDPAIKLGGHWKPADCVPRWKVAILIPFRNR
FT HEHLPVLLRHLLPMLQRQRLQFAFYVIEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIF
FT HDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPN
FT AFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFLGRYALLRKSKER
FT QGLDGLNNLNYSANVTYDALYKNITVNLTPELAQVTEY"
XX
SQ Sequence 3672 BP; 780 A; 951 C; 970 G; 971 T; 0 other;
atgagtgaga tcgcaatgga cgatattcat gagctgttct ccagagaccc ggccattaag 60
ctcggagggc actggaagcc tgcagactgt gtgcctcggt ggaaggtggc tatcctcatc 120
cccttccgga accgccatga gcacctcccg gtcctcctga gacacctgct ccccatgctt 180
cagcgccagc gcctgcagtt cgccttctat gtgatcgagc aagttggcac ccagcccttt 240
aaccgagcca tgcttttcaa tgttggtttt caagaagcca tgaaggactt ggattgggat 300
tgtctgatct tccatgacgt cgatcacata cctgagagtg accgaaacta ctatggctgc 360
gggcagatgc ccaggcactt tgcaaccaag ctggacaagt acatgtacct gctgccctac 420
actgagtttt ttggtggcgt gagcggcctg actgtagaac agtttcggaa aatcaatggc 480
tttcctaatg ccttctgggg ctggggcgga gaagatgacg acttgtggaa cagggtacaa 540
aatgcaggct attctgtgag ccggccagaa ggggacacag gaaaatacaa gtccattcct 600
caccaccatc gaggagaggt ccagtttctt ggcaggtacg ctctgctgag gaagtcaaag 660
gagcggcaag gactggatgg cctcaacaac ctgaactact ctgcgaatgt cacgtacgac 720
gccttgtata aaaacataac tgtcaacttg acacccgagc tggctcaggt gactgagtac 780
tgagatgcga agagaagccg cactcaccta cccaccgctc ccttggacgg gctgcgaccc 840
gccatcctgg gggtcaacac aggaggacag aagagagtgg agcacaggac cataggggtt 900
ccagaaaact gtcacagagc acacgcacaa aggccttcgc tgtagggccc aacagggaca 960
ggagacttga ggacacctgt catcagcact ggtgtctatt ccacaagaca gatgtctgcc 1020
ctgccactcc cttccgtccg tccctgtccg tccccccccc ccccaccgcc cccaggtcct 1080
gtctcagctg caacccatag aactgcaggg ccaggctagg tgccccttgg atagatgggt 1140
ggccaagccc cctggcctga aggcccgtct ctgcatctct acagttctct ttggttttca 1200
tttttcattt ggcttagttt aggggttttt gtttgtttgg gtttttttgt tttgttttgt 1260
tttgttttgt tttggttttg gtttgtttgt ggggttttgg ggttgttttt ttttttggtg 1320
gttttttttt ttttttttta aagaaaaatt ttctgctttg ggtggggact gaggacagag 1380
gggagggact tggtgtgata gacatataac agtcacttct tgaagaagtg cagttgtaaa 1440
taagccatgt aaaatgcctt tttaaagttt aattttatag ctggctccac atcaaagtga 1500
gggcctcata tgttagatca ccttgggtgg caaacacccc agttcccacg cagttgagtg 1560
tcatcaccca agtccctgtc atctaggaag gaagtggatg cagggtggaa caaagaacct 1620
ccggtcactg tagcccctct tctctgctct gcccctcctt tcctgtcccc tcctttagcc 1680
ccttccccca aggacttcct cctggagact cagcccctaa gctggaactg ctgttagggg 1740
cacagtgctc tcccctctta cagacccagc ggagccagct gggatgtgca ggggagggga 1800
ggcaaaggcc cagggcacag gcttatcact ccagtatgga tggcgggagc tagagaccag 1860
gagatatgag gccagtgtga gctgtgtcac aagttccagg tcagcctgtg ctgtgtagca 1920
cagtccagct ccctacacct cctcacacac acagtggctg ctgggtgacc gttccctttt 1980
ttctttggaa cttggccaca gtttctctgg gctgtgcctg catgaccagc tggcttcagt 2040
gatttctccg tttccctctt tagtttctag gaagccactg tgctgtgcta agaagcagtt 2100
ggtcaggagg gctcagccca ggagcaggtg gccctggggt gcatgtcagc caggggccag 2160
tcagcccagc agtctcccct gctccctgac atgagttcct aaagggcact gaaaagggca 2220
cctccttcct gtgtctgcct ccactgcacc cccagtccct aaagcaggga tcgtgtgtgg 2280
tgaggaacgc tctcttctgg cctcaagctc tttgcctctt tgccttcagc acccttgatg 2340
ttcatggttt acatgggtgg gggtgggatg tagatatgtg ggggtggggt tttgcatcac 2400
acagttggtt ctgaggacag atgatcccca cagactgtgg gagtgattgg ccaggccttg 2460
ttttttcttg tgttttgttc tttttgtaga ctagtgtggt aactagggaa cagatggcac 2520
tgcagagtgc ttcccgctca tatgagagag caggtgtctg cccttgagag ctggtgagcc 2580
gcgtcatctg tttgcgctgg gcaaggagct gcaccgctgc gttgacctgc cttgtcttac 2640
ggtacacaca gcaataaagc ctgggttccg cccggtctcc accctccctc cgcctccctt 2700
ggttagtttc acagtgctgg caatgaagcc cgtggcccac cacgctaggc gagtgctctg 2760
ccactgagtc acggcccagc cctctctccc tcattcttct gtttccatac caaaggccag 2820
gagtgcttca ctgtgctgga gccatggtgt cctttggagg gacaacggtg cacgcggcat 2880
gtatcctggc tgaagcgctg caatcttaca ctagccacag ggtactgttt tgagccaaag 2940
gctgatactt aattgaagag ggaaaatgca gatttgggga caaaggtctt tttactgctc 3000
aagtagggtc gcttctgtcc tgttgcaatc atgtccaagt ttgtttttag tgtggacttt 3060
tgtgggcact gtctgtcatt ggccacccag tcacgtaccg agtgggcagt gtcacagcca 3120
aagcctacca ctgagccaca gcgtaggtca ttgcttgaaa aaaatgacag tgacaatgga 3180
gtgtgacctt ggtgtactgt ggcagcccag atgactgagt gctacagacg agtgaccctt 3240
agatgacctc ctcaactgcc tgccttgtgt gtgcgcgcaa ggcccctctc tgcacagggg 3300
ttcttcgggg gagggggtat ttgcaaaacc ttaattttgt taaaatgggg gactctgtca 3360
ggggactctg tcatcgcttc ccttcctcag aggacagcac agagccgcgg cgtacacact 3420
gacgtaccca ccaccaacag attgaggcac tgacgcagcc agcttagccc agcattactg 3480
tctctgttgt gagcttgctc tttgttttaa aaggtgccag gggtacattt ttgcactgaa 3540
acctaaagat gttttaaaaa cacttttcac agaaatagtc cttgtcatta cattgttcac 3600
tcatgtgttt gtacattttt gtatgttaat ttatgaatga ttttttcagt aaaaaataca 3660
tattcaataa cc 3672
//