Dbfetch

ID   AK151469; SV 1; linear; mRNA; HTC; MUS; 3671 BP.
XX
AC   AK151469;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
DE   library, clone:I830030J03 product:UDP-Gal:betaGlcNAc beta
DE   1,4-galactosyltransferase, polypeptide 5, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3671
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science, e1252229 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science, e1252229 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   MD5; 549a8ac87d6817d05588e9597407c477.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Tissues were provided by David A. Hume ( Depts. of Biochemistry
CC   and Microbiology/Parasitology Institute for Molecular Bioscience
CC   University of Queensland Brisbane,Q 4072 Australia ) whose
CC   assistance we gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=I830030J03
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FH   Key             Location/Qualifiers
FH
FT   source          1..3671
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="I830030J03"
FT                   /cell_type="macrophage"
FT                   /tissue_type="bone marrow"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..783
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase,
FT                   polypeptide 5 (MGD|MGI:1927169 GB|AK079138, evidence:
FT                   BLASTN, 99%, match=1467)"
FT                   /note="putative"
FT                   /note="start codon is not identified"
FT                   /db_xref="GOA:Q3U7I0"
FT                   /db_xref="InterPro:IPR003859"
FT                   /db_xref="InterPro:IPR027791"
FT                   /db_xref="InterPro:IPR027995"
FT                   /db_xref="InterPro:IPR029044"
FT                   /db_xref="MGI:MGI:1927169"
FT                   /db_xref="UniProtKB/TrEMBL:Q3U7I0"
FT                   /protein_id="BAE30427.1"
FT                   /translation="MSEIAMDDIHELFSRDPAIKLGGHWKPADCVPRWKVAILIPFRNR
FT                   HEHLPVLLRHLLPMLQRQRLQFAFYVIEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIF
FT                   HDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPN
FT                   AFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFLGRYALLRKSKER
FT                   QGLDGLNNLNYSANVTYDALYKNITVNLTPELAQVTEY"
XX
SQ   Sequence 3671 BP; 780 A; 950 C; 970 G; 971 T; 0 other;
     atgagtgaga tcgcaatgga cgatattcat gagctgttct ccagagaccc ggccattaag        60
     ctcggagggc actggaagcc tgcagactgt gtgcctcggt ggaaggtggc tatcctcatc       120
     cccttccgga accgccatga gcacctcccg gtcctcctga gacacctgct ccccatgctt       180
     cagcgccagc gcctgcagtt cgccttctat gtgatcgagc aagttggcac ccagcccttt       240
     aaccgagcca tgcttttcaa tgttggtttt caagaagcca tgaaggactt ggattgggat       300
     tgtctgatct tccatgacgt cgatcacata cctgagagtg accgaaacta ctatggctgc       360
     gggcagatgc ccaggcactt tgcaaccaag ctggacaagt acatgtacct gctgccctac       420
     actgagtttt ttggtggcgt gagcggcctg actgtagaac agtttcggaa aatcaatggc       480
     tttcctaatg ccttctgggg ctggggcgga gaagatgacg acttgtggaa cagggtacaa       540
     aatgcaggct attctgtgag ccggccagaa ggggacacag gaaaatacaa gtccattcct       600
     caccaccatc gaggagaggt ccagtttctt ggcaggtacg ctctgctgag gaagtcaaag       660
     gagcggcaag gactggatgg cctcaacaac ctgaactact ctgcgaatgt cacgtacgac       720
     gccttgtata aaaacataac tgtcaacttg acacccgagc tggctcaggt gactgagtac       780
     tgagatgcga agagaagccg cactcaccta cccaccgctc ccttggacgg gctgcgaccc       840
     gccatcctgg gggtcaacac aggaggacag aagagagtgg agcacaggac cataggggtt       900
     ccagaaaact gtcacagagc acacgcacaa aggccttcgc tgtagggccc aacagggaca       960
     ggagacttga ggacacctgt catcagcact ggtgtctatt ccacaagaca gatgtctgcc      1020
     ctgccactcc cttccgtccg tccctgtccg tccccccccc cccaccgccc ccaggtcctg      1080
     tctcagctgc aacccataga actgcagggc caggctaggt gccccttgga tagatgggtg      1140
     gccaagcccc ctggcctgaa ggcccgtctc tgcatctcta cagttctctt tggttttcat      1200
     ttttcatttg gcttagttta ggggtttttg tttgtttggg tttttttgtt ttgttttgtt      1260
     ttgttttgtt ttggttttgg tttgtttgtg gggttttggg gttgtttttt ttttggtggt      1320
     tttttttttt ttttttttaa agaaaaattt tctgctttgg gtggggactg aggacagagg      1380
     ggagggactt ggtgtgatag acatataaca gtcacttctt gaagaagtgc agttgtaaat      1440
     aagccatgta aaatgccttt ttaaagttta attttatagc tggctccaca tcaaagtgag      1500
     ggcctcatat gttagatcac cttgggtggc aaacacccca gttcccacgc agttgagtgt      1560
     catcacccaa gtccctgtca tctaggaagg aagtggatgc agggtggaac aaagaacctc      1620
     cggtcactgt agcccctctt ctctgctctg cccctccttt cctgtcccct cctttagccc      1680
     cttcccccaa ggacttcctc ctggagactc cagcccctaa gctggaactg ctgttagggg      1740
     cacagtgctc tcccctctta cagacccagc ggagccagct gggatgtgca ggggagggga      1800
     ggcaaaggcc cagggcacag gcttatcact ccagtatgga tggcgggagc tagagaccag      1860
     gagatatgag gccagtgtga gctgtgtcac aagttccagg tcagcctgtg ctgtgtagca      1920
     cagtccagct ccctacacct cctcacacac acagtggctg ctgggtgacc gttccctttt      1980
     ttctttggaa cttggccaca gtttctctgg gctgtgcctg catgaccagc tggcttcagt      2040
     gatttctccg tttccctctt tagtttctag gaagccactg tgctgtgcta agaagcagtt      2100
     ggtcaggagg gctcagccca ggagcaggtg gccctggggt gcatgtcagc caggggccag      2160
     tcagcccagc agtctcccct gctccctgac atgagttcct aaagggcact gaaaagggca      2220
     cctccttcct gtgtctgcct ccactgcacc cccagtccct aaagcaggga tcgtgtgtgg      2280
     tgaggaacgc tctcttctgg cctcaagctc tttgcctctt tgccttcagc acccttgatg      2340
     ttcatggttt acatgggtgg gggtgggatg tagatatgtg ggggtggggt tttgcatcac      2400
     acagttggtt ctgaggacag atgatcccca cagactgtgg gagtgattgg ccaggccttg      2460
     ttttttcttg tgttttgttc tttttgtaga ctagtgtggt aactagggaa cagatggcac      2520
     tgcagagtgc ttcccgctca tatgagagag caggtgtctg cccttgagag ctggtgagcc      2580
     gcgtcatctg tttgcgctgg gcaaggagct gcaccgctgc gttgacctgc cttgtcttac      2640
     ggtacacaca gcaataaagc ctgggttccg cccggtctcc accctccctc cgcctccctt      2700
     ggttagtttc acagtgctgg caatgaagcc cgtggcccac cacgctaggc gagtgctctg      2760
     ccactgagtc acggcccagc cctctctccc tcattcttct gtttccatac caaaggccag      2820
     gagtgcttca ctgtgctgga gccatggtgt cctttggagg gacaacggtg cacgcggcat      2880
     gtatcctggc tgaagcgctg caatcttaca ctagccacag ggtactgttt tgagccaaag      2940
     gctgatactt aattgaagag ggaaaatgca gatttgggga caaaggtctt tttactgctc      3000
     aagtagggtc gcttctgtcc tgttgcaatc atgtccaagt ttgtttttag tgtggacttt      3060
     tgtgggcact gtctgtcatt ggccacccag tcacgtaccg agtgggcagt gtcacagcca      3120
     aagctaccac tgagccacag cgtaggtcat tgcttgaaaa aaatgacagt gacaatggag      3180
     tgtgaccttg gtgtactgtg gcagcccaga tgactgagtg ctacagacga gtgaccctta      3240
     gatgacctcc tcaactgcct gccttgtgtg tgcgcgcaag gcccctctct gcacaggggt      3300
     tcttcggggg agggggtatt tgcaaaacct taattttgtt aaaatggggg actctgtcag      3360
     gggactctgt catcgcttcc cttcctcaga ggacagcaca gagccgcggc gtacacactg      3420
     acgtacccac caccaacaga ttgaggcact gacgcagcca gcttagccca gcattactgt      3480
     ctctgttgtg agcttgctct ttgttttaaa aggtgccagg ggtacatttt tgcactgaaa      3540
     cctaaagatg ttttaaaaac acttttcaca gaaatagtcc ttgtcattac attgttcact      3600
     catgtgtttg tacatttttg tatgttaatt tatgaatgat tttttcagta aaaaatacat      3660
     attcaataac c                                                           3671
//