Dbfetch
ID AK150177; SV 1; linear; mRNA; HTC; MUS; 1682 BP. XX AC AK150177; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched DE library, clone:G530141O19 product:adipose differentiation related protein, DE full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1682 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 45119a974dc9df7b9e53855f55032da3. DR Ensembl-Gn; ENSMUSG00000028494; mus_musculus. DR Ensembl-Gn; MGP_DBA2J_G0028227; mus_musculus_dba2j. DR Ensembl-Gn; MGP_PWKPhJ_G0027273; mus_musculus_pwkphj. DR Ensembl-Tr; ENSMUST00000000466; mus_musculus. DR Ensembl-Tr; MGP_DBA2J_T0065955; mus_musculus_dba2j. DR Ensembl-Tr; MGP_PWKPhJ_T0065771; mus_musculus_pwkphj. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by David A. Hume ( Depts. of Biochemistry CC and Microbiology/Parasitology Institute for Molecular Bioscience CC University of Queensland Brisbane,Q 4072 Australia ) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=G530141O19 XX FH Key Location/Qualifiers FH FT source 1..1682 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="G530141O19" FT /cell_type="macrophage" FT /tissue_type="bone marrow" FT /db_xref="taxon:10090" FT CDS 79..1356 FT /codon_start=1 FT /transl_table=1 FT /note="adipose differentiation related protein FT (MGD|MGI:87920 GB|NM_007408, evidence: BLASTN, 99%, FT match=1682)" FT /note="putative" FT /db_xref="GOA:P43883" FT /db_xref="InterPro:IPR004279" FT /db_xref="MGI:MGI:87920" FT /db_xref="UniProtKB/Swiss-Prot:P43883" FT /protein_id="BAE29361.1" FT /translation="MAAAVVDPQQSVVMRVANLPLVSSTYDLVSSAYVSTKDQYPYLRS FT VCEMAEKGVKTVTSAAMTSALPIIQKLEPQIAVANTYACKGLDRMEERLPILNQPTSEI FT VASARGAVTGAKDVVTTTMAGAKDSVASTVSGVVDKTKGAVTGSVERTKSVVNGSINTV FT LGMVQFMNSGVDNAITKSELLVDQYFPLTQEELEMEAKKVEGFDMVQKPSNYERLESLS FT TKLCSRAYHQALSRVKEAKQKSQETISQLHSTVHLIEFARKNMHSANQKIQGAQDKLYV FT SWVEWKRSIGYDDTDESHCVEHIESRTLAIARNLTQQLQTTCQTVLVNAQGLPQNIQDQ FT AKHLGVMAGDIYSVFRNAASFKEVSDGVLTSSKGQLQKMKESLDEVMDYFVNNTPLNWL FT VGPFYPQSTEVNKASLKVQQSEVKAQ" FT regulatory 1664..1669 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1682 FT /note="putative" XX SQ Sequence 1682 BP; 420 A; 417 C; 459 G; 386 T; 0 other; gcgtggtgat ctggaccgtg cggacttgct cgtccctcag ctctcctgtt aggcgtctct 60 tttctccagg aggaaaaaat ggcagcagca gtagtggatc cgcaacagag cgtggtgatg 120 agagtggcca acctgccctt ggtgagctct acctacgacc ttgtgtcctc cgcttatgtc 180 agtacaaagg atcagtaccc gtatttgaga tccgtgtgtg agatggccga gaagggcgtg 240 aagaccgtga cctctgcggc catgacaagt gccctgccca tcatccagaa gctggagcca 300 caaattgcgg ttgccaatac ctatgcctgc aaggggctag acaggatgga ggaaagactg 360 cctattctga accagccaac gtccgagatt gttgccagtg ccagaggtgc cgtaactggg 420 gcgaaggatg tggtgacgac taccatggct ggagccaagg attctgtagc cagcacagtc 480 tcaggggtgg tggataagac caaaggagca gtgactggca gcgtggaaag gaccaagtct 540 gtggtcaatg gcagcatcaa tacagttttg gggatggtgc agttcatgaa cagtggagta 600 gataatgcca tcaccaagtc ggagctgctg gtagaccagt acttccctct cactcaggag 660 gagctggaga tggaagcaaa aaaggtggaa ggatttgata tggttcagaa gccgagcaac 720 tatgaacggc tggagtccct gtctaccaag ctctgctctc gggcttatca ccaggctctc 780 agcagggtta aagaggccaa acaaaagagc caggagacca tttctcagct ccactccact 840 gtccacctga ttgaattcgc caggaagaat atgcacagtg ccaaccagaa aattcagggt 900 gctcaggata agctctatgt ctcgtgggtg gagtggaaga gaagcatcgg ctacgacgac 960 accgatgagt cccactgtgt tgagcacatc gagtcacgta ctctggctat cgcccgcaac 1020 ctgacccagc agctccagac tacatgccag actgtcctgg tcaacgccca agggttacca 1080 cagaacattc aagatcaggc caaacacttg ggggtgatgg caggcgacat ctactccgta 1140 ttccgcaatg ctgcctcctt taaggaagtg tccgatggcg tcctcacatc tagcaagggg 1200 cagctgcaga aaatgaagga atccttagat gaagttatgg attactttgt taacaacacg 1260 cctctcaact ggctggtagg tcccttttat cctcagtcta ccgaggtgaa caaggccagc 1320 ctgaaggtcc agcagtctga ggtcaaagct cagtaaaccc ctccttgtca ccagagcatg 1380 atgttgctgg ccagatgacc ccttttgctg tattgaaatt aacttggtag atggctttag 1440 cttagaaaag cagcttctta gaaccaaggg cctcattatg gtcactcaca gctcagttat 1500 ggtcttgccc cagctggccc tggcacagga gttctcttac ctggctggtg agtggcctgt 1560 gttagtcttg tgaggacctc gaggaaccta aaagctcaga tgcacttaca gtcttgtctg 1620 tggcctttgt attgttattg gctgtaaacg tctgtctgga ccgaataaag attcattcac 1680 gt 1682 //