ID AK149289; SV 1; linear; mRNA; HTC; MUS; 1393 BP.
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AC AK149289;
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DT 06-SEP-2005 (Rel. 85, Created)
DT 07-OCT-2010 (Rel. 106, Last updated, Version 11)
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DE Mus musculus adult retina cDNA, RIKEN full-length enriched library,
DE clone:A930012N24 product:3-phosphoinositide dependent protein kinase-1,
DE full insert sequence.
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KW CAP trapper; HTC; HTC_FLI.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-1393
RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT ;
RL Submitted (30-MAR-2004) to the INSDC.
RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL
RL :http://www.osc.riken.jp/
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RN [2]
RX PUBMED; 16141072.
RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG Science Group (Genome Network Project Core Group)
RA ;
RT "The Transcriptional Landscape of the Mammalian Genome";
RL Science, e1252229 309(5740):1559-1563(2005).
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RN [3]
RX DOI; 10.1126/science.1112009.
RX PUBMED; 16141073.
RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG Network Project Core Group) and the FANTOM Consortium
RA ;
RT "Antisense Transcription in the Mammalian Transcriptome";
RL Science, e1252229 309(5740):1564-1566(2005).
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RN [4]
RX PUBMED; 12466851.
RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG I and II Team
RA ;
RT "Analysis of the mouse transcriptome based on functional annotation of
RT 60,770 full-length cDNAs";
RL Nature 420(6915):563-573(2002).
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RN [5]
RX PUBMED; 11217851.
RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG Consortium
RA ;
RT "Functional annotation of a full-length mouse cDNA collection";
RL Nature 409(6821):685-690(2001).
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RN [6]
RX DOI; 10.1016/S0076-6879(99)03004-9.
RX PUBMED; 10349636.
RA Carninci P., Hayashizaki Y.;
RT "High-efficiency full-length cDNA cloning";
RL Meth. Enzymol. 303:19-44(1999).
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RN [7]
RX DOI; 10.1101/gr.145100.
RX PUBMED; 11042159.
RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT full-length cDNA libraries for rapid discovery of new genes";
RL Genome Res. 10(10):1617-1630(2000).
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RN [8]
RX DOI; 10.1101/gr.152600.
RX PUBMED; 11076861.
RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT pipeline with 384 multicapillary sequencer";
RL Genome Res. 10(11):1757-1771(2000).
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DR MD5; 69f9242a5fc13d3788ace1b81882c2c3.
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CC cDNA library was prepared and sequenced in Mouse Genome
CC Encyclopedia Project of Genome Exploration Research Group in Riken
CC Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC Division of Experimental Animal Research in Riken contributed to
CC prepare mouse tissues.
CC Please visit our web site for further details.
CC URL:http://www.osc.riken.jp/
CC URL:http://fantom.gsc.riken.jp/
CC clone information is available at:
CC http://fantom.gsc.riken.jp/3/db/annotate/
CC main.cgi?masterid=A930012N24
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FH Key Location/Qualifiers
FH
FT source 1..1393
FT /organism="Mus musculus"
FT /strain="C57BL/6J"
FT /mol_type="mRNA"
FT /dev_stage="adult"
FT /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT /clone="A930012N24"
FT /tissue_type="retina"
FT /db_xref="taxon:10090"
FT CDS 93..>1393
FT /codon_start=1
FT /transl_table=1
FT /note="3-phosphoinositide dependent protein kinase-1
FT (MGD|MGI:1338068 GB|AF079535, evidence: BLASTN, 99%,
FT match=1392)"
FT /note="putative"
FT /db_xref="GOA:Q3UEW8"
FT /db_xref="InterPro:IPR000719"
FT /db_xref="InterPro:IPR008271"
FT /db_xref="InterPro:IPR011009"
FT /db_xref="InterPro:IPR017441"
FT /db_xref="InterPro:IPR039046"
FT /db_xref="MGI:MGI:1338068"
FT /db_xref="UniProtKB/TrEMBL:Q3UEW8"
FT /protein_id="BAE28793.1"
FT /translation="MARTTSQLYDAVPIQSSVVLCSCPSPSMVRSQTEPGSSPGIPSGV
FT SRQGSTMDGTTAEARPSTNPLQQHPAQLPPQPRKKRPEDFKFGKILGEGSFSTVVLARE
FT LATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLS
FT YAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHI
FT QITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG
FT LPPFRAGNEYLIFQKIIKLEYHFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLK
FT AHPFFETITWENLHQQTPPKLTAYLPAMSEDDEDCYGNYDNLLSQFGFMQVSSSSSSHS
FT LSTVETSLPQRSGSNIEQYIHDLDTNSFELDLQFS"
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SQ Sequence 1393 BP; 371 A; 356 C; 333 G; 333 T; 0 other;
tttgctgggg ctccgccgcg gggaggagga cgctgaggag gcgccgagca gcgcaacgct 60
gcgggggagg cgcccgcgcc gacttggggc tcatggccag gaccaccagc cagctgtatg 120
acgctgtgcc cattcagtcc agtgtggtgc tatgttcctg cccatcccca tcaatggtga 180
ggtcccagac tgagcccggt tcgtcccctg gcattcctag tggtgttagc aggcagggat 240
ccaccatgga tggcaccaca gctgaagccc gaccaagcac caaccccttg cagcagcacc 300
ctgcccagct gccaccacag cctcgcaaga aacgccctga agacttcaag tttgggaaaa 360
ttcttggcga gggctctttt tcaacagttg ttctggcccg agaactggcc acttccagag 420
aatatgctat taaaattctg gagaaacgtc atattataaa agaaaacaaa gttccgtatg 480
taactagaga gagagatgtg atgtcacgcc tggatcaccc cttctttgtg aaactttatt 540
ttacatttca ggacgacgaa aagctgtatt ttggccttag ttatgccaaa aatggagagc 600
tacttaaata catccgcaaa attggctcat ttgatgagac ctgtacccgg ttttacacgg 660
ctgagattgt gtctgcttta gagtacttgc atggcaaggg catcattcac agagacctta 720
aaccagaaaa cattttgtta aatgaagaca tgcacatcca gatcacagat tttggaacag 780
caaaagtgtt atccccagag agcaaacaag ccagggccaa ctcatttgta ggaacagcac 840
agtatgtttc tccagagctg ctcacagaga agtcggcgtg taaaagttca gacctttggg 900
cccttggatg tataatctat cagctcgtgg caggactccc accattcaga gccgggaatg 960
aatatcttat atttcagaag atcattaagc tggaatatca tttcccagaa aaattcttcc 1020
ctaaggctag agatcttgtg gaaaaactct tggttttaga tgccacaaag cgtttaggct 1080
gtgaagagat ggaagggtac gggcctctca aagctcatcc attctttgag accatcactt 1140
gggagaattt gcaccagcag acacctccga agctcacagc ttacctacca gccatgtcag 1200
aggatgatga agactgctat ggcaactacg acaatctcct gagccagttt ggcttcatgc 1260
aggtgtcatc ctcctcctct tcccactccc tgtctacggt ggaaaccagc ctgccccaga 1320
ggtcgggcag caacatagag cagtacatcc atgatttgga cactaactct tttgaactag 1380
acttacagtt ttc 1393
//