Dbfetch
ID AK149141; SV 1; linear; mRNA; HTC; MUS; 1948 BP. XX AC AK149141; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length DE enriched library, clone:7120488C16 product:dopa decarboxylase, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-1948 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; ae34b8e85b678b978a51a7581dac5ef8. DR Ensembl-Gn; ENSMUSG00000020182; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0018047; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0018020; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0017984; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0017988; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0017801; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0018440; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0017363; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0017776; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0017886; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0017878; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0017957; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0017904; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0018481; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0017143; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0017417; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000066237; mus_musculus. DR Ensembl-Tr; ENSMUST00000109659; mus_musculus. DR Ensembl-Tr; ENSMUST00000178704; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0028088; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0028058; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0028018; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0028037; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0027834; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0028532; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0027445; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0027761; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0027890; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0027878; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0028002; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0027861; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0028565; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0027144; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0027344; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=7120488C16 XX FH Key Location/Qualifiers FH FT source 1..1948 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /dev_stage="2 days neonate" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="7120488C16" FT /tissue_type="sympathetic ganglion" FT /db_xref="taxon:10090" FT CDS 74..1516 FT /codon_start=1 FT /transl_table=1 FT /note="dopa decarboxylase (MGD|MGI:94876 GB|BC060989, FT evidence: BLASTN, 99%, match=1882)" FT /note="putative" FT /db_xref="GOA:Q5SUV8" FT /db_xref="InterPro:IPR002129" FT /db_xref="InterPro:IPR010977" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015422" FT /db_xref="InterPro:IPR015424" FT /db_xref="InterPro:IPR021115" FT /db_xref="MGI:MGI:94876" FT /db_xref="UniProtKB/TrEMBL:Q5SUV8" FT /protein_id="BAE28750.1" FT /translation="MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPAT FT APQEPETYEDIIKDIEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFS FT WAASPACTELETVMMDWLGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKV FT IRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASAL FT REALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFIC FT PEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVYLKHSHQDS FT GFITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFE FT ICTEVILGLVCFRLKGSNELNETLLQRINSAKKIHLVPCRLRDKFVLRFAVCARTVESA FT HVQLAWEHISDLASSVLRAEKE" FT regulatory 1925..1930 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 1948 FT /note="putative" XX SQ Sequence 1948 BP; 478 A; 437 C; 520 G; 513 T; 0 other; gaactgtcac caaggagaga gagagagcaa gagagcgaat agagaggagg cgactccagc 60 tgcctttttc aacatggatt cccgtgaatt ccggaggaga ggcaaggaga tggtggatta 120 tatagctgac tatctggatg gcattgaggg tcgtccagtg taccctgatg tggagcctgg 180 ctatcttcgg cccctgatcc ctgccactgc cccccaggag ccagaaacat acgaggacat 240 aatcaaagac atcgagaaga taatcatgcc aggggtgaca cactggcaca gtccctattt 300 cttcgcttac ttccccacgg ctagctcata cccagctatg cttgcagaca tgctgtgtgg 360 tgctattggc tgcattggtt tctcctgggc tgcaagccca gcgtgcacag agctggagac 420 cgtgatgatg gactggctgg ggaagatgct ggagctgcca gaggcctttt tggctggaag 480 agctggggaa gggggaggag tgatccaggg aagtgccagt gaagccacct tggtggccct 540 actggctgct cggactaaag ttatccgcca gctgcaggca gcctccccag agttcacaca 600 agctgctatc atggaaaagc tggttgctta cacatctgat caggcgcatt cctctgtaga 660 aagagctggg ttaattggtg gaataaagct aaaagcagtc ccttcggatg gcaacttttc 720 catgagagct tctgcccttc gggaagccct ggagcgggac aaggcagctg gcctgattcc 780 attctttgtg gtcgctacac tggggaccac atcctgctgt tcttttgaca atctcctgga 840 agtgggtccc atctgcaacc aggagggtgt gtggctgcac attgacgctg cttacgcggg 900 cagtgccttt atctgtcctg aattccggta tcttctgaat ggtgtggagt ttgcagattc 960 ctttaacttt aatccccaca agtggctttt ggtgaacttt gactgctctg ccatgtgggt 1020 gaagaggagg actgacttaa ccggagcctt taatatggac cctgtttatc taaagcacag 1080 tcaccaggac tcaggattca tcactgacta caggcactgg cagatcccac tggggcgacg 1140 atttcgctct ttgaaaatgt ggtttgtttt tagaatgtac ggagtcaagg ggctgcaggc 1200 ttacatccga aagcacgtgg agctgtctca tgagtttgag tcactggtac gccaggaccc 1260 tcgctttgaa atttgcacag aagtcattct tgggttggtc tgcttccggc taaagggctc 1320 caatgagttg aacgaaactc tcttacaaag aataaacagc gccaaaaaaa tccacttggt 1380 tccatgtcgt ctccgagaca agtttgtgct acgctttgct gtgtgcgctc gcactgtgga 1440 gtctgcccac gtgcagctgg cctgggaaca catcagtgat ctagcaagca gtgtgctgag 1500 ggcagagaaa gaatgaaagc agagctgctt cagagatcaa aagttgaaaa gaagtttatc 1560 tgaaaactgg aaagagaaaa ataactacca ctccgtcttc gtgaaatcat gattacatgt 1620 ggcgtcatgt gtgtctccaa cattaaccag aaacctctga ctgacttttt ggtgacttat 1680 caatgaagaa atattttctg tattgtccag ggaaaagtat tttctgtgtg gaaagctatt 1740 gtcagtggct ctagcttctg ttctttgtgt ggccgtgact tctgttgata ataagatgtc 1800 tttgtgctca taaggtcatt ggtggcagga taggcttata gaaatagttt ccagggcagt 1860 ctttggtctt accttcagag tatatctatg gctgttaact tatcctctgt gtggctaaat 1920 actaaataaa caacctatgt gcaatact 1948 //