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EBI Dbfetch

ID   AK148276; SV 1; linear; mRNA; HTC; MUS; 4443 BP.
XX
AC   AK148276;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
DE   clone:G370074D17 product:solute carrier family 11 (proton-coupled divalent
DE   metal ion transporters), member 2, full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-4443
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 82365264417b0bd9df5472fec3591194.
DR   Ensembl-Gn; ENSMUSG00000023030; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000023774; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000138843; mus_musculus.
DR   EuropePMC; PMC3232652; 21947773.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Cells were provided by Drs. William J Pavan and Stacie Loftus and
CC   Denise Larson (Division of Intramural Research Genetic Disease
CC   Research Branch National Human Genome Reseach Institute National
CC   Institutes of Health (NIH) Building:  49, Room 4A82 49 Convent
CC   Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we
CC   gratefully acknowledge.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=G370074D17
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..4443
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="G370074D17"
FT                   /cell_type="B16 F10Y cells"
FT                   /db_xref="taxon:10090"
FT   CDS             81..1766
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="putative"
FT                   /note="solute carrier family 11 (proton-coupled divalent
FT                   metal ion transporters), member 2 (MGD|MGI:1345279
FT                   GB|AK049856, evidence: BLASTN, 99%, match=1943)"
FT                   /db_xref="GOA:P49282"
FT                   /db_xref="InterPro:IPR001046"
FT                   /db_xref="MGI:MGI:1345279"
FT                   /db_xref="UniProtKB/Swiss-Prot:P49282"
FT                   /protein_id="BAE28454.1"
FT                   /translation="MVLDPEEKMPDDGASGDHGDSASLGAINPAYSNSSLPHSTGDSEE
FT                   PFTTYFDEKIPIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKL
FT                   LWVLLLATIVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRIILWLMVELAIIGSDMQ
FT                   EVIGSAIAINLLSAGRVPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTF
FT                   GYEYITVKPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNMYLHSALVKSRQV
FT                   NRANKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFEKTNKQVVEVCKNNSSP
FT                   HADLFPSDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVME
FT                   GFLNLKWSRFARVILTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPIL
FT                   TFTSLRPVMSEFSNGIGWRIAGGILVLIVCSINMYFVVVYVQELGHVALYVVAAVVSVA
FT                   YLTFVFYLGWQCLIALGLSFLDCGRSVSISKVLLSEDTSGGNIK"
FT   polyA_signal    4419..4424
FT                   /note="putative"
FT   polyA_site      4443
FT                   /note="putative"
XX
SQ   Sequence 4443 BP; 957 A; 1097 C; 1138 G; 1251 T; 0 other;
     gacggtgtcg ccggcgcggc gtgtgtggag gtggcggagc cgaatcctat tctaagagca        60
     cagaccccca ggtatctacc atggtgttgg atcctgaaga aaagatgcca gacgatggcg       120
     cttctggaga ccatggagac tctgccagcc ttggcgccat caaccctgcc tacagcaact       180
     cttccctccc acattccact ggagactctg aggagccctt caccacctac tttgatgaga       240
     aaatccccat tcctgaggag gagtactcct gttttagctt tcgtaaactc tgggcgttca       300
     cggggcctgg ctttcttatg agcattgcct acctagaccc aggaaacatc gaatctgatt       360
     tgcagtctgg agcagtggct ggatttaagc tgctctgggt gctcctcttg gccaccattg       420
     tggggctgct gctccagcgc cttgcagcga gacttggagt ggtcaccggc ttgcatcttg       480
     ctgaagtatg tcaccgtcag tatcccaagg tcccacggat catcctgtgg ctgatggtgg       540
     agttggcaat cattggttct gacatgcagg aagtcattgg ctcagccatc gccatcaatc       600
     tcctgtctgc aggaagggtc cccctgtggg gcggagtcct catcaccatc gcagacactt       660
     ttgtgtttct ttttttggac aaatatggct tgcggaagct ggaagcgttt tttggctttc       720
     tcatcactat catggccctc acgtttggat atgagtacat tacagtgaag cccagccaga       780
     gccaagtact caggggcatg ttcgtgccgt cctgtccagg gtgccgcacc cctcaggtgg       840
     agcaggcggt gggcatcgtg ggagctgtga tcatgccgca caacatgtac ctgcattctg       900
     ccttagtcaa gtctagacag gtgaatcggg ccaataagca ggaagtgcgg gaagccaata       960
     agtacttctt catcgagtcc tgcatcgcgc tctttgtttc cttcatcatc aatgtctttg      1020
     tcgtgtccgt ctttgctgaa gcattttttg agaaaaccaa caagcaggtg gttgaagtct      1080
     gcaaaaataa cagcagcccc catgctgacc tctttcccag tgacaactct actctggctg      1140
     tggacatcta caaagggggt gttgtgcttg gatgttactt cgggcctgca gctctctaca      1200
     tctgggcagt ggggatcctg gctgccggtc agagctccac catgactgga acctattctg      1260
     gccagtttgt catggaggga ttcctgaacc taaaatggtc gcgctttgcc cgagtgatcc      1320
     tgacccggtc tatcgccatc atccccaccc tgctcgtcgc tgtcttccag gatgtggagc      1380
     acctaacggg gatgaatgac ttcctgaatg tcctgcagag cttacagctc ccctttgctc      1440
     tcatacccat cctcacgttc acaagcctgc ggccagtgat gagtgagttt tccaatggaa      1500
     taggctggag gattgccggt ggcatcctgg tcctgatcgt ctgctccatc aacatgtact      1560
     ttgtagtggt ttatgtccag gagctagggc atgtggcact ctatgtggtg gctgcagtgg      1620
     ttagcgtggc ttatttgacc tttgtgttct acttgggttg gcagtgtttg attgcattgg      1680
     gtctgtcttt cctggactgt ggacgctcgg taagcatctc gaaagtcctg ctgagcgaag      1740
     acaccagcgg tggcaacatt aagtaaacac tggatcagtc tgtctgtctt tgcagggagc      1800
     catcagagcc agtgtgtttc tatggtttac tgtgtgaaca tagccacaag tatgtgctgt      1860
     tgcacagact gcatttagga ctcaactgtt agttgggaaa cactgatgtg tgtgtgtgtg      1920
     tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtatgtgtt aaggtctttg      1980
     tttccttttg tttttgtgaa atagcatctt gctataaaat actaggttgc ctaaaactca      2040
     ctatgtagct taggctgtgc tcaaacctac agcaatcctt ctgacctaag ctcctgagtg      2100
     ctgggatttc aggcacgtct accatgcctg gctctcatgt atgcttaaga tgagttttgt      2160
     tgggggtcag ggtggggggt agggggtctt accctgtagc attaggcagc accttgaaaa      2220
     ggtggccctt gagctgtttt aaacactaag tttctaaata gctgcccaag ggcagtagct      2280
     tgtttttagt caaaagaaac ccaaccagac tgtcgccatc gttgaattat agaatgagac      2340
     tgctgccttt gaagtcaggg tttttgtttg gtgcattttg tttgtttttc aagagttttt      2400
     tcatggctgt cctggaactt actctgtaga ccaggatggc ttcgaactca cagagatcct      2460
     cctgcctctg cctctgcctc tgcctctacc tcccgagtgc taggattaga ggcagacacc      2520
     tccactgccc tgctggttca ggattttttt tgtttttttc tactttggaa tttctcagtg      2580
     gaaagaaaaa aaaaggtagg gcataagtgg tgggtgtggg cagatgatgg ctcacctgca      2640
     gtgcaggttt tccttaagga gtggagttta gcagggaggg cttcatcttt agccctgagg      2700
     ttagtaactt ctctgctgat ataagccttc ccgatagtgt tgaatcttga gcacacacag      2760
     tccctgaatc tttctcttct gagagagtgc tgcctgcaga agactgtagc actcgtggac      2820
     tgacttttat gaggctctgg actcggaacg agacacagag ctaactgcac tactcccaaa      2880
     agtacccttc accaaatcat gtctctggcg ctgctattcc acgcccaaga taactcagaa      2940
     ggcaatctca ggagctctgg acccaaacct tgcaaagtca gtagatgtca ctggtgtgaa      3000
     gtcctctccc ggcaaggtgg gcctaggctg catcctcaca gcccttcctc ggagagaaag      3060
     cctgctgagg ccagactgcg aagctctgga gtcttcagca ccgaactgct gccctcagtt      3120
     cagctacttc tgacctgtca cgggggagac gtaattctat cacatcaaat gctgtctgtc      3180
     tgctggagag gagtgacaca agagtgtgtg atcattgtct tggtggcagc gggtgctaga      3240
     gctgcttcga aggatgtcct ctctgacgct ttccctgtgg cgagcgggcc gacaaatggc      3300
     ctttgctgtc tgtgcctcta tagcattcct gctagcattt ctcacagtca gaggctcagc      3360
     ctgcatagat ctttatgagg catacattat caatcgctgt gtttcactca cccacagcta      3420
     atccaacaaa accaggtcat gggtcactca cagcagcatt cccaacctgt ggttgccacc      3480
     catctgcaac cctatattca aagacattta cctcatgatt tgtaacagta gcaagattag      3540
     ttacaaagta gcaaaattat tattgggtgt gacccccagc atgaggagct gacttaaaag      3600
     agtgacagcg tcctgaaggt ggggaacccc tgcactacag ggtcctcctc acccctgccc      3660
     ccctccccca ctgttcccga aggctggaag ctgagttttt gaacctgtgc agtgcttgag      3720
     ggccaggctg acggcagcag aattccttgc atagatgctc tagtgatgtc tgcatttgta      3780
     cagggatggg gtggggcgag cagggtgtat ccagattcgc catacttaaa gagtccagcc      3840
     tgaagctgct tgggatcgcg cccaggggtc tgcctcgtgt gttctaggca aggctccgct      3900
     gcacatctca cttcctgccc cagaattctg ttgtgttata cttgtttaca atgatagaag      3960
     gcttcgttgt gtgatacggt ctcttctgac tctctgacta caatatttac agtgtcaaaa      4020
     gattaaaaat gttccctatt catttgattg tcactgaaaa cggtacttca acagtacagt      4080
     aacctgtaaa catttcacac cccccacgca actctgctac cggcattata tttgtgagcc      4140
     atctttgtgc attctctgaa ttggtccttg ttcttatgtg acctgaagta gttgtcccct      4200
     cagtgcactg ggagctgaca ggccggggag tagcggcagc ttgtcttgtg agatcctgcc      4260
     aggtcggcag caagtggctt caaggaggct ttagtgaact ttttacagct tgtgaacgtg      4320
     ctgtaattaa accagagctt cccgctttcc tgtttggttt tctttcctgt ttggtcttta      4380
     acaccgaaaa cactttatga tggagcctta acaactgaaa taaagacctg ccagtcgcca      4440
     tcc                                                                    4443
//


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