Dbfetch
ID AK147543; SV 1; linear; mRNA; HTC; MUS; 3154 BP. XX AC AK147543; XX DT 06-SEP-2005 (Rel. 85, Created) DT 07-OCT-2010 (Rel. 106, Last updated, Version 11) XX DE Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1069M13 DE product:amyloid beta (A4) precursor protein, full insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. XX RN [1] RP 1-3154 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the INSDC. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The Transcriptional Landscape of the Mammalian Genome"; RL Science, e1252229 309(5740):1559-1563(2005). XX RN [3] RX DOI; 10.1126/science.1112009. RX PUBMED; 16141073. RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science, e1252229 309(5740):1564-1566(2005). XX RN [4] RX PUBMED; 12466851. RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420(6915):563-573(2002). XX RN [5] RX PUBMED; 11217851. RG The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM RG Consortium RA ; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9. RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100. RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600. RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR MD5; 9e14dcf3f0b05766fc4c2f2487410551. DR Ensembl-Gn; ENSMUSG00000022892; mus_musculus. DR Ensembl-Gn; MGP_129S1SvImJ_G0022971; mus_musculus_129s1svimj. DR Ensembl-Gn; MGP_AJ_G0022939; mus_musculus_aj. DR Ensembl-Gn; MGP_AKRJ_G0022909; mus_musculus_akrj. DR Ensembl-Gn; MGP_BALBcJ_G0022941; mus_musculus_balbcj. DR Ensembl-Gn; MGP_C3HHeJ_G0022703; mus_musculus_c3hhej. DR Ensembl-Gn; MGP_C57BL6NJ_G0023388; mus_musculus_c57bl6nj. DR Ensembl-Gn; MGP_CASTEiJ_G0022225; mus_musculus_casteij. DR Ensembl-Gn; MGP_CBAJ_G0022672; mus_musculus_cbaj. DR Ensembl-Gn; MGP_DBA2J_G0022806; mus_musculus_dba2j. DR Ensembl-Gn; MGP_FVBNJ_G0022781; mus_musculus_fvbnj. DR Ensembl-Gn; MGP_LPJ_G0022875; mus_musculus_lpj. DR Ensembl-Gn; MGP_NODShiLtJ_G0022800; mus_musculus_nodshiltj. DR Ensembl-Gn; MGP_NZOHlLtJ_G0023406; mus_musculus_nzohlltj. DR Ensembl-Gn; MGP_PWKPhJ_G0021967; mus_musculus_pwkphj. DR Ensembl-Gn; MGP_WSBEiJ_G0022273; mus_musculus_wsbeij. DR Ensembl-Tr; ENSMUST00000005406; mus_musculus. DR Ensembl-Tr; MGP_129S1SvImJ_T0044934; mus_musculus_129s1svimj. DR Ensembl-Tr; MGP_AJ_T0044916; mus_musculus_aj. DR Ensembl-Tr; MGP_AKRJ_T0044886; mus_musculus_akrj. DR Ensembl-Tr; MGP_BALBcJ_T0044892; mus_musculus_balbcj. DR Ensembl-Tr; MGP_C3HHeJ_T0044631; mus_musculus_c3hhej. DR Ensembl-Tr; MGP_C57BL6NJ_T0045372; mus_musculus_c57bl6nj. DR Ensembl-Tr; MGP_CASTEiJ_T0044753; mus_musculus_casteij. DR Ensembl-Tr; MGP_CBAJ_T0044543; mus_musculus_cbaj. DR Ensembl-Tr; MGP_DBA2J_T0044696; mus_musculus_dba2j. DR Ensembl-Tr; MGP_FVBNJ_T0044646; mus_musculus_fvbnj. DR Ensembl-Tr; MGP_LPJ_T0044770; mus_musculus_lpj. DR Ensembl-Tr; MGP_NODShiLtJ_T0044625; mus_musculus_nodshiltj. DR Ensembl-Tr; MGP_NZOHlLtJ_T0045429; mus_musculus_nzohlltj. DR Ensembl-Tr; MGP_PWKPhJ_T0044330; mus_musculus_pwkphj. DR Ensembl-Tr; MGP_WSBEiJ_T0044000; mus_musculus_wsbeij. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ CC clone information is available at: CC http://fantom.gsc.riken.jp/3/db/annotate/ CC main.cgi?masterid=M5C1069M13 XX FH Key Location/Qualifiers FH FT source 1..3154 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="M5C1069M13" FT /note="pooled tissues: (dev_stage=14 days pregnant FT adult,tissue_type=placenta,sex=female),(dev_stage=adult, FT tissue_type=brain,sex=male,cell_type=undefined_cell_type, FT cell_line=UNDEFINED_CELL_LINE)" FT /db_xref="taxon:10090" FT CDS 186..2273 FT /codon_start=1 FT /transl_table=1 FT /note="amyloid beta (A4) precursor protein (MGD|MGI:88059 FT GB|X59379, evidence: BLASTN, 99%, match=3037)" FT /note="putative" FT /db_xref="GOA:Q6GR78" FT /db_xref="InterPro:IPR008154" FT /db_xref="InterPro:IPR008155" FT /db_xref="InterPro:IPR011178" FT /db_xref="InterPro:IPR011993" FT /db_xref="InterPro:IPR013803" FT /db_xref="InterPro:IPR015849" FT /db_xref="InterPro:IPR019543" FT /db_xref="InterPro:IPR019744" FT /db_xref="InterPro:IPR019745" FT /db_xref="InterPro:IPR024329" FT /db_xref="InterPro:IPR028866" FT /db_xref="InterPro:IPR036176" FT /db_xref="InterPro:IPR036454" FT /db_xref="InterPro:IPR036669" FT /db_xref="InterPro:IPR037071" FT /db_xref="MGI:MGI:88059" FT /db_xref="UniProtKB/TrEMBL:Q6GR78" FT /protein_id="BAE27986.1" FT /translation="MLPSLALLLLAAWTVRALEVPTDGNAGLLAEPQIAMFCGKLNMHM FT NVQNGKWESDPSGTKTCIGTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQ FT CKTHTHIVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKST FT NLHDYGMLLPCGIDKFRGVEFVCCPLAEESDSVDSADAEEDDSDVWWGGADTDYADGGE FT DKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEEAEEPYEEATERTTSTATTTTTTTE FT SVEEVVRVPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEE FT AERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALE FT NYITALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTH FT LRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDA FT LMPSLTETKTTVELLPVNGEFSLDDLQPWHPFGVDSVPANTENEVEPVDARPAADRGLT FT TRPGSGLTNIKTEEISEVKMDAEFGHDSGFEVRHQKLVFFAEDVGSNKGAIIGLMVGGV FT VIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQ FT N" FT regulatory 3138..3143 FT /note="putative" FT /regulatory_class="polyA_signal_sequence" FT polyA_site 3154 FT /note="putative" XX SQ Sequence 3154 BP; 837 A; 787 C; 832 G; 698 T; 0 other; ggtcggctgc gagccccgcc gcctcgctcc agctctgtca gtttcctcgg cggcgggagg 60 cgagagcacc gggagcagag cgagcgcgga gccaccggag acggcggcgg cggcgcggac 120 acagccaggg cgcggcggat cttccactcg cacacggagc actcggtggc ccacgcagga 180 tcacgatgct gcccagcttg gcactgctcc tgctggccgc ctggacggtt cgggctctgg 240 aggtacccac tgatggcaac gccgggctgc tggcagaacc ccagatcgcc atgttctgtg 300 gtaaactcaa catgcacatg aatgtgcaga atggaaagtg ggagtcagac ccgtcaggga 360 ccaaaacctg cattggcacc aaggagggca tcttgcagta ctgccaagag gtctaccctg 420 aactgcagat cacaaacgtg gtggaagcca accagccagt gaccatccag aactggtgca 480 agcggggccg caagcagtgc aagacacaca cccacatcgt gattccttac cgttgcctag 540 ttggtgagtt tgtgagcgac gcccttctcg tgcccgacaa gtgcaagttc ctacaccagg 600 agcggatgga tgtttgtgag acccatcttc actggcacac cgtcgccaaa gagacatgca 660 gcgagaagag cactaacttg cacgactatg gcatgctgct gccctgcggc atcgacaagt 720 tccgaggggt agagtttgta tgctgcccgt tggccgagga aagcgacagc gtggattctg 780 cggatgcaga ggaggatgac tctgatgtct ggtggggtgg agcggacaca gactacgctg 840 atggcggtga agacaaagta gtagaagtcg ccgaagagga ggaagtggct gatgttgagg 900 aagaggaagc tgatgatgat gaggatgtgg aggatgggga cgaggtggag gaggaggccg 960 aggagcccta cgaagaggcc accgagagaa caaccagcac tgccaccacc accacaacca 1020 ccactgagtc cgtggaggag gtggtccgag ttcccacgac agcagccagc acccccgacg 1080 ccgtcgacaa gtacctggag acacccgggg acgagaacga gcatgcccat ttccagaaag 1140 ccaaagagag gctggaagcc aagcaccgag agagaatgtc ccaggtcatg agagaatggg 1200 aagaggcaga gcgtcaagcc aagaacttgc ccaaagctga caagaaggcc gttatccagc 1260 atttccagga gaaagtggaa tctctggaac aggaagcagc caatgagaga cagcagcttg 1320 tagagacaca catggccaga gttgaagcca tgctcaatga ccgccgccgc ctggccctcg 1380 agaattacat cactgcactg caggcggtgc ccccaaggcc tcatcatgtg ttcaacatgc 1440 tgaagaagta cgtccgtgcg gagcagaaag acagacagca caccctaaag cattttgaac 1500 atgtgcgcat ggtggacccc aagaaagctg ctcagatccg gtcccaggtt atgacacacc 1560 tccgtgtgat ctacgagcgc atgaaccagt ctctgtccct gctctacaat gtccctgcgg 1620 tggctgagga gattcaagat gaagtcgatg agctgcttca gaaggagcag aactactccg 1680 acgatgtctt ggccaacatg atcagtgagc ccagaatcag ctacggaaac gacgctctca 1740 tgccttcgct gacggaaacc aagaccaccg tggagctcct tcccgtgaat ggggaattca 1800 gcctggatga cctccagccg tggcaccctt ttggggtgga ctctgtgcca gccaataccg 1860 aaaatgaagt cgagcctgtt gacgcccgcc ccgctgctga ccgaggactg accactcgac 1920 caggttctgg gctgacaaac atcaagacgg aagagatctc ggaagtgaag atggatgcag 1980 aattcggaca tgattcagga tttgaagtcc gccatcaaaa actggtgttc tttgctgaag 2040 atgtgggttc gaacaaaggc gccatcatcg gactcatggt gggcggcgtt gtcatagcaa 2100 ccgtgattgt catcaccctg gtgatgttga agaagaaaca gtacacatcc atccatcatg 2160 gcgtggtgga ggtcgacgcc gccgtgaccc cagaggagcg ccatctctcc aagatgcagc 2220 agaacggata tgagaatcca acttacaagt tctttgagca aatgcagaac taagccccac 2280 ccgcgccaca gcagcggcct ctgaacttgg acagcgaaac cattgcttca ctacccatcg 2340 gtgttcattt ataaaataac gtggaaagaa acaaaccctt ccgtttattt actcaccctc 2400 ggcttttgac agctgtgctg taacacaagt agatgcctga acttgaatta atatacaaat 2460 cagtaatgta ttctcgcttt ctctctttac attctggtct ctacattaca tgattcatgg 2520 gttttgtgta ctgtaaaaaa aaaaattagc tgtatcaaac tagtgcatga atagattctc 2580 tcctaattat ttatcacata catagcccct tagcccgttg tatattattc ttgtggtttg 2640 tggcccggaa aaaactccta cttgaaatat gctttaaaaa tcgatggggg atgcttcttg 2700 tgaacgtggg cgtctagctg cttctcctac gtattctttt cctgatcact atgcattttg 2760 aacatttttt taagtattcc aaatgactta gaaaattctt tttccatgac tgcatcttac 2820 tgtacagatt gctgcttctg ctctctttgt gatataggaa taagaggata cacattgatt 2880 tctttgtgcc tgttttatgt gcacacatta ggcattgaga atttgaacat tttttttgtc 2940 catgtatctt tggatctttg ataaaaaaaa attaaaaaaa aattatccct gttcatcata 3000 agcactttta cgggtggggg gagggagtgt tctgctggtc tccaattacc aagaattctc 3060 caaaaattaa ttttctgcag gatgattgta cagaatcatt gcttatgcca tgatagcttt 3120 ctacactgta ttacataaat aaattaaata aaat 3154 //