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EBI Dbfetch

ID   AK147541; SV 1; linear; mRNA; HTC; MUS; 8279 BP.
XX
AC   AK147541;
XX
DT   06-SEP-2005 (Rel. 85, Created)
DT   07-OCT-2010 (Rel. 106, Last updated, Version 11)
XX
DE   Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1068N01
DE   product:CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2,
DE   full insert sequence.
XX
KW   CAP trapper; HTC; HTC_FLI.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-8279
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (30-MAR-2004) to the INSDC.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
XX
RN   [2]
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The Transcriptional Landscape of the Mammalian Genome";
RL   Science 309(5740):1559-1563(2005).
XX
RN   [3]
RX   DOI; 10.1126/science.1112009.
RX   PUBMED; 16141073.
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309(5740):1564-1566(2005).
XX
RN   [4]
RX   PUBMED; 12466851.
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420(6915):563-573(2002).
XX
RN   [5]
RX   PUBMED; 11217851.
RG   The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM
RG   Consortium
RA   ;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
XX
RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9.
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
XX
RN   [7]
RX   DOI; 10.1101/gr.145100.
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
XX
RN   [8]
RX   DOI; 10.1101/gr.152600.
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
XX
DR   MD5; 46e6a84f9a7f90f013687eb6b983b02a.
DR   Ensembl-Gn; ENSMUSG00000058793; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000103181; mus_musculus.
XX
CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
CC   clone information is available at:
CC   http://fantom.gsc.riken.jp/3/db/annotate/
CC   main.cgi?masterid=M5C1068N01
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..8279
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="M5C1068N01"
FT                   /note="pooled tissues: (dev_stage=14 days pregnant
FT                   adult,tissue_type=placenta,sex=female),(dev_stage=adult,
FT                   tissue_type=brain,sex=male,cell_type=undefined_cell_type,
FT                   cell_line=UNDEFINED_CELL_LINE)"
FT                   /db_xref="taxon:10090"
FT   CDS             189..1523
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="CDP-diacylglycerol synthase (phosphatidate
FT                   cytidylyltransferase) 2 (MGD|MGI:1332236 GB|NM_138651,
FT                   evidence: BLASTN, 100%, match=3887)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q99L43"
FT                   /db_xref="InterPro:IPR000374"
FT                   /db_xref="InterPro:IPR016720"
FT                   /db_xref="MGI:MGI:1332236"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99L43"
FT                   /protein_id="BAE27984.1"
FT                   /translation="MTELRQRVVREDAPPEDKESESEAKLDGETASDSESRAETAPLPT
FT                   SVDDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMMIVMCVQIKC
FT                   FHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSK
FT                   YHRFISFALYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMI
FT                   WFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMS
FT                   GYRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQSAIGWKTVRMYPFQIHSIA
FT                   LSTFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASF
FT                   IRGPNPSKLIQQFLTLRPDQQLHIFNTLKSHLTDKGILTSALEDE"
FT   polyA_signal    8266..8271
FT                   /note="putative"
FT   polyA_site      8279
FT                   /note="putative"
XX
SQ   Sequence 8279 BP; 1748 A; 2017 C; 2240 G; 2274 T; 0 other;
     ggggcaaggg cggcggcagc ggtgctgggc ggggccgggc tcggggctag tggcgctgct        60
     gcaggggctg tgcgaggcac ggtggggctg cgaggtgctc gggcccgccg agagcccgtg       120
     ctcactgagc cgacccccgc ggccaccgtg ctgctcactc ggggtgacgt cgcgccgggg       180
     tccccagcat gaccgaacta cggcagaggg ttgtccgcga ggacgcacct ccggaggaca       240
     aggaatcaga gtccgaagca aagctagatg gagagacagc gtctgacagc gagagccgag       300
     cggaaacagc tcccctacca acctccgtag atgacacccc agaggtcctt aacagggccc       360
     tttccaacct gtcctcaagg tggaagaact ggtgggtgag aggcatcctg actttggcca       420
     tgatcgcgtt tttcttcatt atcatttacc tgggaccaat ggttttgatg atgattgtta       480
     tgtgtgtcca gattaagtgt ttccatgaaa taatcactat tggctacaat gtataccact       540
     cctacgacct gccctggttc aggaccctca gctggtactt cctgctgtgt gtgaactact       600
     tcttctatgg ggagacagtg acggactact tcttcactct ggtccagaga gaggagcctt       660
     tgcggatcct cagtaaatac caccggttca tctcctttgc cctgtatctg acaggattct       720
     gcatgtttgt actgagtcta gttaagaagc attatcggct gcagttctac atgtttggct       780
     ggacccatgt gaccttgctt attgtcgtaa cgcagtcaca ccttgttatc cataacttgt       840
     ttgaaggaat gatatggttt attgttccca tctcgtgcgt catctgcaat gacattatgg       900
     cctatatgtt tggctttttc tttggtcgga ccccactcat taagctctct ccaaagaaga       960
     cctgggaagg cttcattggg ggcttctttg ccactgtggt gtttggcctt ttgctctcct      1020
     atgtgatgtc tgggtacaga tgcttcgtgt gtcccgtgga atacaacaat gacaccaaca      1080
     gcttcactgt ggactgtgag ccgtctgacc tattccgcct gcaggagtac aacatccctg      1140
     gggtgatcca gtcggccatt ggctggaaaa cggtgaggat gtaccctttc cagatccaca      1200
     gcatcgccct ctccaccttc gcctcgctca tcggcccttt cggagggttc ttcgccagtg      1260
     gattcaaacg ggcctttaaa atcaaagatt ttgccaatac cattcccggt catggaggca      1320
     tcatggatcg ctttgactgc cagtacctga tggccacctt tgtcaatgtg tacatcgcca      1380
     gctttatcag gggtccaaac ccaagcaaac tgatccagca gtttctgacg ttgcggccag      1440
     atcagcagct tcacatcttc aacacgctca agtctcacct aactgacaag gggattctga      1500
     catctgcctt ggaagatgag tagagtccac ctggggccca gagagctgga gcaggatgga      1560
     gtgggggcca gtcgccaagg ccgcccagct gctgtgactt agataatgaa aagcttcaac      1620
     tcaccaccgt catttttttt tctttttcct ttttgtgcgt gtgtggtttt taatctgtat      1680
     atactgtctg tttatagtgt gggcagtgag taagctgtag ctttgagttg caaagaagtc      1740
     acaggaaaga accatttggg tttctgaagt acaagtattg agcaacatga agggcagtgt      1800
     tgcccagctc agggtgtctg cttggtggct ctaacccctg cccatccagt tgtttctggg      1860
     ctgtgcgaga gatcatacat tgatctgtgt gtgatgagtt gagggctttc ccacctgcac      1920
     gggccttcac gggctccacg cttttgctgt ccttgacacc tctcgttggg gcttctgcag      1980
     gcatctctgt ctgagagcag tgggggctgc cctctgtaga gctgtgagag cagtgggggc      2040
     tgccctctgt agagctgtga gagcagtggg gggctgccct ctgtagagct gtgagagcag      2100
     tggggggctg ccctctgtag agctgtgaga gcagtggggg ctgccctctg tagagctgtg      2160
     agagcagtgg gggctgccct ctgtagagct gtgagagcag tgggggctgc cctctgtaga      2220
     gctgtgaggg agaggctttc tgatcagatg aacatctgtc caagccaaaa ttctgcagag      2280
     ggcaggtgag ctttgcttat gtagtttgct ttcaccatat agactgagag aagatttcag      2340
     acttcttttt ctcagaaagc atgaagaatt tatgaagtat ggaaaagaag cccttacata      2400
     ttccagatgt gtgcagcagg gggcactgtc ccagccctct ctgccccagc caggcacagt      2460
     ggcctctaga gggtggtcct gtagaccgca ccttttagag tcgaggcctc tgtggttgtg      2520
     ccgcgggttt gctgctgtgc tgagtccttc tgggggagcc ctaagaggtg gggagcagag      2580
     gacttttgct cagacaccct ttgcctggaa gcccacttgt gttgctgctg tgttgtgtat      2640
     atagtattct cgagatgagc gtatgtgtgt ctgtttaaaa gtcaccttgt ttcctacatg      2700
     attttagtca tacccaaacg tcctcagaat ccctacatcc tgcttagaac tgtggccggc      2760
     ctaatctgtc aagaggcttg gctcttcaag actcagtgtc cactttatca aatgtgaccg      2820
     gtgtagctgt agtttgtact ttcctgggga ccttctgctg gggtttgtgt aagctgtgat      2880
     tctttccctt cctaataggt tgagcttgac atggaaagga gcagttggca gggaaggaac      2940
     ttattcccca agagtggtaa ctaacccaca gccctgctcg gtgtgcccac cgctgagagg      3000
     ctgcagtgac ttccccaagt accgtggtct gtgctaattt gttttcagat tagtcttcct      3060
     gtggcctcca acactcagcc agccctcaga gtgtccgctg tgcgcacggg ggcggggcgg      3120
     ggcgggcagc tccttgtctc tcagctttga ctgacttgtc cgcattgggg atttttgttc      3180
     tcagctccca ggccgcactg aacacagtgt tgctgccttc agtttggttc tggccatgag      3240
     gcccctagtg ggagctttgc ccttagggct gtcctctgac ttgccctcaa agttcaccaa      3300
     ttcggcaact ccatggagac ggtcgtgtca ctctcagccc ctgttgctat taagtcatgt      3360
     catgggcacc cggaaaagga aatacactga ggtgtatttt acaattgctc cttaagattc      3420
     tcagtggaga ttaggagcaa cactgcactt ctgatagaaa aatggccttg gatcactaaa      3480
     ctaggtagag aagggcacac cacaccccag cgccccagga gccaaaactc acgctcgggc      3540
     agcagcagct gaggcttgag gaagctggtg tcctaagaca ctgaaaccca gtgctcattg      3600
     gagctgccag ccacaggttt ctattctgag ttctccagtc ttgtgaaaga ggagaatttc      3660
     ccagtcaggt agccaggaga acagtgccac cctgcgattg tgccaccctg tgattgtata      3720
     gcgtgttgtt tgttccagta agcaggcagg cccagagact gctttctcag caccgcacag      3780
     atctcagtgg gtcacataac ttgctttaca ctcatcttgt tgtgtcagaa ataaagtgtt      3840
     cgtgcttttc cttgtcagga gtcccgtgtt tgtcacttgt tgtgtggttt tatgtttccc      3900
     gctgtgtgag cataaacact gtgcagtttt cctgcttgcc agcctgtgtg ccatctgttc      3960
     tcacagcctc tgagatgtct caggtgagag ccatggggtg gaaccataaa gtccccatct      4020
     caaagtgtgc ctgtgggaca gggttagtag ctactccccg aggccccaac ccgggaaata      4080
     ctgcagtgtt ccttcctgca ggccttggag ccctgaccag gccagtcctg ggcactgctt      4140
     agatggctgt tagcttagaa ctggtgaagt aaagatttgg tcccagaaac cagcctgaca      4200
     tgagaacaag ccagggtgtc ttcctggtga gttctactca tggtcgttct caggaaaact      4260
     gtgttccctt tgtgtgtacg tttctcaccc cttaaccact ttagtgtcaa aaaagttccc      4320
     attgtgtctt ctgaaagtga agtcccataa ggaagttggg agagaatgtg cagggtgcac      4380
     acacgcatgt acaaacacac acacacacac acacacacac acacacacac acacacagag      4440
     cctatttcac attctcagac ttttagtttc tgcttgataa ccgcatttaa aatgtattct      4500
     taatgtgctg tagtgtgtgt gagccggtgt ccagaggtgt gaaatatacc atgtaatctc      4560
     acacaggtgg actgtggaac cgtttttatg gattttgccc ctgcttgctt tcatcctgta      4620
     acctagccct gtattataca agaaaacttg agcaggacat ttcaagagaa tatgttggcc      4680
     taattgttgg gttggctggg acctgctctg aagggatccc tcagttcacc gattggcaag      4740
     ccaaggtcag tccttgctgt tgatggagct gggaggagga gggacctaag gactcaggac      4800
     agagcatctc acgcgaagtt ctgtgtggca gtcaagtgtt cctcgtggag tcagcctgag      4860
     gtagatttcc aggaaagcct tttcctcgtt accagtgtgt gatgtcacaa ctgaaacttg      4920
     tgttagtaac gtctaaggcc atgttgcctt tgtctttaga gtaattcctg gctgtgccta      4980
     ccactcctgc atactgtgct tatgtgcgtg ctgcgctttg atggggagga gggcaggtcc      5040
     ctgtgcagcc agggttcttg ctccttccat ggcaggatga gaaggaaggc ctaagaggct      5100
     ggccaggggc ctggtgtaga cacagtagaa gacagtcaac tatgggcgca ttctgtctgg      5160
     agctcccaga aggagctgtg tgctgctgga gaggaggcta attgttggtt cagactcctc      5220
     cgcttgggta aaagactccc cttatcactc tcctcacagt tgctctgcat ctttaaagag      5280
     tattagcttc tgcttccgga ctcagtcttt gttgagtggg ccacttccag gggtgtgccc      5340
     ggggttaggc aagtggcaga cgagggttct tatttgaggc tttgctaggc tcatctgctg      5400
     tgtcctgggt agtccactca tattcttgca gggtgagtcc atgctcagga gaatgcggtc      5460
     cacctttcta tgtactctag cttccctctc ttcaggttga tatagcgaca ttacctgggc      5520
     tctgtgctgt cctgtgggtg gaggccatta tcactgggct gctgctttcc tgggcaagcc      5580
     actctctatt tttctgcaaa ggtcaaaaga ccctggtgtt gggggccctt tagagggtgt      5640
     gctttggacg ctgacctctt agggctttag gacagaggga cgatgttgag tctagaaggg      5700
     cacaatatgc cagagtttta tggccagtga tcctcaaatc cattggctgt ttgaagaccc      5760
     tgtcctcact tctccttttt tcaggtgact ctctgcttgg ctctttatct tactcttcag      5820
     ctaatgaagt agcaacagtg tgttactaat gattgcaatc atacagtgct taatatgtgc      5880
     cagacacagt gccgagggct tgcatgcatt atctccttta atccacaagc agctctggcg      5940
     aggtggtatt agcccatctt acagatggga aaactgaagt tctgtgctag agattgagaa      6000
     caatgtaaag acttgaggct taggtagtgc tctatctggt caggctatag gctgcgggca      6060
     gccttcactt ccaaccagcc gctgtgagga tttagtgagc taacgcatgt aagcatttgg      6120
     caaggtgcct ggcacatagt aagcactcaa taaatggtag tttttttgtt cttttaaact      6180
     gagctcagcg agtttggccc acactggtgg gctgctgggt attcagccac cacactcttc      6240
     actgcttgga cctagttggt gtttgtgttc tgtaaagtga gcacgttgtc ctcccaagag      6300
     aagcacttca gtggtgcagt ggtaagagcc cacagcattg aggccagcct gactgaagga      6360
     tgatgtgagg ctgtttgtca cttctgttct tttccccgtg gttgagactg cccacaggaa      6420
     aagggctggc tgctctgaca tggtggggcg tctcctgggg cctggctcgc tgtggaccct      6480
     gctctcccca gccacgttct gtagtctgtt gtacatctca ggaaccctcg gttcctccac      6540
     ggatggacga ctgcagaata gagcagaata gagaaagtaa gcctgaagct gagtgcctca      6600
     gccacaaacc taaaggagct gcctgtgtct gacagcacag ccattccatc tcttccgtcc      6660
     gtctgtctgt ctgggttgtt ttgttttgtt gttgttttga gacagggttt ctttgtgtag      6720
     ccctgactgt tctggaactt gctctgaaga ccaggctgac ctcgaactca gagatctgcc      6780
     tgcctctgct tcccaagtgc tgggattaaa ggcatgcgcc accttcacct gggttttctt      6840
     tcttaaagga acaggttaga gcaagtgacc gttgaggaca ggtgatgtga atgtttgttc      6900
     tagatttaat tcagttttct gaatggacac agggagttgg gagtatgtgt gtgtgtgtgt      6960
     gtgtgtgtgt gtgtgtgtgt gcgcgcgcgc gcgcgcgtgt gtgtgtgctt caccttgatt      7020
     gagtggcatt ggctcacatg acccaggaga ttcccagact ctgttagtag tgtctaggaa      7080
     cttgtgttcc agctgaggag tgtcccaggt gttaacgaga ctgaggccta ttgctggagt      7140
     tcagatactg cagctcctct tgtttttctg cactgtgttt gccagccctg cccccatctg      7200
     atggaccagg cagtccttta tctggaggga aaagtctgat gccagcagag gtcctggggc      7260
     gctgctctcc caggtcctgg tcagactcag ctccatagct cttggaggct ttccctggat      7320
     tccctgagta cagtgttaaa aggcctaacc acacagccac ctgccctaag tgacattgtg      7380
     tttttaggtg tcaccgtctt agccctttgt tttccttact agagtatctt tcccgcaccc      7440
     ctaggtttgt attctggttc tactggcttt tctcagtggg acaccaaggt agaaagggag      7500
     taagaatggt tttccagtga gttgaatgtg cacacgttta tgagaggcct ttgggtgagc      7560
     tttctgctca ttccttggtt tgtcttgggt cccactgggc aggtgtctag cactgagagg      7620
     gagagtgtag acaagggagc cacggaggta ctggaggcag caattcctca tccagctcag      7680
     ggactcctga cagccaaggg gacagcaaga ggacccagag cagggagggg tcggggagtc      7740
     acacaaccaa aggtagactc agaccagttc agtgctcctg gtggccatag ggaccagaaa      7800
     gcagcttagg aaatctatcc attggccctt ttagagtctc tgtgtgaacc caactctact      7860
     gaacttaaac accttccaaa cagtggcagg ggccacagtg gcagacaggg tagagtaccc      7920
     caggcagttt ctcagcctcg tccgttgtgt ggagggaata ctgaattcag ttatctcacc      7980
     tgactgcttt cctgccctca gacctggaca ctgggcctca gcccctggcc gtgtggaatc      8040
     catgggatcc tcgggactcc ccagacaggc gtgtgtgagt gtgttctgtc atgcagcctc      8100
     agcccaggct aacccagtca gtgttttcac cacgtctgac ctttctctct gcacttagga      8160
     ttggtgtcca cttgtagatt tctttcaaca cagtataaga atgtgatata ttgtatattg      8220
     gaaagtattt accttattta tatacctgaa tgttcctatt aaacaaataa acatatacc       8279
//


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